From fcd6e0eceabe90af1a32784963b7df3c5b8c57b9 Mon Sep 17 00:00:00 2001
From: Pavel Tomanek <shavel.tom@gmail.com>
Date: Mon, 15 Jan 2024 19:42:41 +0100
Subject: [PATCH] adding easyconfigs: Biopython-1.83-foss-2023a.eb

---
 .../b/Biopython/Biopython-1.83-foss-2023a.eb  | 46 +++++++++++++++++++
 1 file changed, 46 insertions(+)
 create mode 100644 easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb

diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb
new file mode 100644
index 00000000000..de31433aa3d
--- /dev/null
+++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb
@@ -0,0 +1,46 @@
+# Updated from previous easyconfig
+# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
+# Update: Pavel Tománek (INUITS)
+
+easyblock = 'PythonPackage'
+
+name = 'Biopython'
+version = '1.83'
+
+homepage = 'https://www.biopython.org'
+description = """Biopython is a set of freely available tools for biological
+ computation written in Python by an international team of developers. It is
+ a distributed collaborative effort to develop Python libraries and
+ applications which address the needs of current and future work in
+ bioinformatics. """
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+source_urls = ['https://biopython.org/DIST']
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['78e6bfb78de63034037afd35fe77cb6e0a9e5b62706becf78a7d922b16ed83f7']
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('SciPy-bundle', '2023.07'),
+]
+
+download_dep_fail = True
+use_pip = True
+sanity_pip_check = True
+
+# Run only tests that don't require internet connection
+runtest = 'python setup.py test --offline'
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/site-packages/Bio',
+             'lib/python%(pyshortver)s/site-packages/BioSQL']
+}
+
+# extra check to ensure numpy dependency is available
+sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
+
+options = {'modulename': 'Bio'}
+
+moduleclass = 'bio'
\ No newline at end of file