From 4171f2284d12f8a13871508dd95a8c07427cbda6 Mon Sep 17 00:00:00 2001
From: joethorley <joe@poissonconsulting.ca>
Date: Wed, 3 Apr 2024 15:56:03 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20poissonc?=
 =?UTF-8?q?onsulting/teckfish@d9375dcc4bf3e97739cfd69800b9827f514656d7=20?=
 =?UTF-8?q?=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 404.html                                  | 2 +-
 CODE_OF_CONDUCT.html                      | 2 +-
 CONTRIBUTING.html                         | 2 +-
 ISSUE_TEMPLATE.html                       | 2 +-
 LICENSE-text.html                         | 2 +-
 LICENSE.html                              | 2 +-
 SUPPORT.html                              | 2 +-
 articles/classify-water-temp.html         | 2 +-
 articles/index.html                       | 2 +-
 authors.html                              | 6 +++---
 index.html                                | 2 +-
 news/index.html                           | 6 +++++-
 pkgdown.yml                               | 2 +-
 pull_request_template.html                | 2 +-
 reference/classify_water_temp_data.html   | 2 +-
 reference/freshwaterfish.html             | 2 +-
 reference/gdd.html                        | 2 +-
 reference/gsdd.html                       | 2 +-
 reference/gsdd_cf.html                    | 2 +-
 reference/gss.html                        | 2 +-
 reference/index.html                      | 2 +-
 reference/interpolate_numeric_vector.html | 2 +-
 reference/reexports.html                  | 2 +-
 reference/teckfish-package.html           | 2 +-
 search.json                               | 2 +-
 25 files changed, 31 insertions(+), 27 deletions(-)

diff --git a/404.html b/404.html
index d0a8284..2ead8e1 100644
--- a/404.html
+++ b/404.html
@@ -24,7 +24,7 @@
     
     <a class="navbar-brand me-2" href="https://poissonconsulting.github.io/teckfish/index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index df8b6a7..09a6d61 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html
index 8eb1912..84f9c85 100644
--- a/CONTRIBUTING.html
+++ b/CONTRIBUTING.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/ISSUE_TEMPLATE.html b/ISSUE_TEMPLATE.html
index dcf4fce..de0f9da 100644
--- a/ISSUE_TEMPLATE.html
+++ b/ISSUE_TEMPLATE.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/LICENSE-text.html b/LICENSE-text.html
index 608e967..fdb806d 100644
--- a/LICENSE-text.html
+++ b/LICENSE-text.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/LICENSE.html b/LICENSE.html
index 94f53f5..775a829 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/SUPPORT.html b/SUPPORT.html
index 814a29d..eec68b2 100644
--- a/SUPPORT.html
+++ b/SUPPORT.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/classify-water-temp.html b/articles/classify-water-temp.html
index d692742..d7dee4e 100644
--- a/articles/classify-water-temp.html
+++ b/articles/classify-water-temp.html
@@ -26,7 +26,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/index.html b/articles/index.html
index 04bc3a7..7fb5045 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/authors.html b/authors.html
index 6a64392..a604545 100644
--- a/authors.html
+++ b/authors.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -92,14 +92,14 @@ <h2 id="citation">Citation</h2>
 
       <p>Thorley J, Pearson A (2024).
 <em>teckfish: R Tools for Teck Fish and Aquatic Sciences Projects</em>.
-R package version 0.2.1, 
+R package version 0.3.0, 
 https://github.com/poissonconsulting/teckfish, <a href="https://poissonconsulting.github.io/teckfish/">https://poissonconsulting.github.io/teckfish/</a>. 
 </p>
       <pre>@Manual{,
   title = {teckfish: R Tools for Teck Fish and Aquatic Sciences Projects},
   author = {Joe Thorley and Ayla Pearson},
   year = {2024},
-  note = {R package version 0.2.1, 
+  note = {R package version 0.3.0, 
 https://github.com/poissonconsulting/teckfish},
   url = {https://poissonconsulting.github.io/teckfish/},
 }</pre>
diff --git a/index.html b/index.html
index 31a9976..7bc1f5e 100644
--- a/index.html
+++ b/index.html
@@ -34,7 +34,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/news/index.html b/news/index.html
index 33c8776..e57f073 100644
--- a/news/index.html
+++ b/news/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -50,6 +50,10 @@
       <small>Source: <a href="https://github.com/poissonconsulting/teckfish/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
+    <div class="section level2">
+<h2 class="pkg-version" data-toc-text="0.3.0" id="teckfish-030">teckfish 0.3.0<a class="anchor" aria-label="anchor" href="#teckfish-030"></a></h2>
+<ul><li>Added <code><a href="../reference/gss.html">gss()</a></code> function from <code>gsdd</code> package to calculate growing seasons.</li>
+</ul></div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="0.2.1" id="teckfish-021">teckfish 0.2.1<a class="anchor" aria-label="anchor" href="#teckfish-021"></a></h2>
 <ul><li>Set lower default <code>min_length = 120</code> for <code><a href="../reference/gsdd_cf.html">gsdd_cf()</a></code>.</li>
diff --git a/pkgdown.yml b/pkgdown.yml
index bd75199..ed44075 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   classify-water-temp: classify-water-temp.html
-last_built: 2024-04-03T15:53Z
+last_built: 2024-04-03T15:55Z
 urls:
   reference: https://poissonconsulting.github.io/teckfish/reference
   article: https://poissonconsulting.github.io/teckfish/articles
diff --git a/pull_request_template.html b/pull_request_template.html
index c2d04e7..6029f97 100644
--- a/pull_request_template.html
+++ b/pull_request_template.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/classify_water_temp_data.html b/reference/classify_water_temp_data.html
index dc1b44b..994dde2 100644
--- a/reference/classify_water_temp_data.html
+++ b/reference/classify_water_temp_data.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/freshwaterfish.html b/reference/freshwaterfish.html
index 1541f85..22da9e5 100644
--- a/reference/freshwaterfish.html
+++ b/reference/freshwaterfish.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/gdd.html b/reference/gdd.html
index edc323b..27fda70 100644
--- a/reference/gdd.html
+++ b/reference/gdd.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/gsdd.html b/reference/gsdd.html
index f080e4e..58cd917 100644
--- a/reference/gsdd.html
+++ b/reference/gsdd.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/gsdd_cf.html b/reference/gsdd_cf.html
index 1523c56..54500a8 100644
--- a/reference/gsdd_cf.html
+++ b/reference/gsdd_cf.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/gss.html b/reference/gss.html
index ed2281d..2a18ff6 100644
--- a/reference/gss.html
+++ b/reference/gss.html
@@ -14,7 +14,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index.html b/reference/index.html
index 349c295..73d59e0 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/interpolate_numeric_vector.html b/reference/interpolate_numeric_vector.html
index f072672..01a39c3 100644
--- a/reference/interpolate_numeric_vector.html
+++ b/reference/interpolate_numeric_vector.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/reexports.html b/reference/reexports.html
index c06d5d5..dc93bab 100644
--- a/reference/reexports.html
+++ b/reference/reexports.html
@@ -24,7 +24,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/teckfish-package.html b/reference/teckfish-package.html
index 1af3c22..a95d0ef 100644
--- a/reference/teckfish-package.html
+++ b/reference/teckfish-package.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">teckfish</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.2.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.3.0</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/search.json b/search.json
index 71923da..277a9b9 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement .github/. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contributing to teckfish","title":"Contributing to teckfish","text":"outlines propose change teckfish.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"fixing-typos","dir":"","previous_headings":"","what":"Fixing typos","title":"Contributing to teckfish","text":"can fix typos, spelling mistakes, grammatical errors documentation directly using GitHub web interface, long changes made source file. generally means ’ll need edit roxygen2 comments .R, .Rd file. can find .R file generates .Rd reading comment first line.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"bigger-changes","dir":"","previous_headings":"","what":"Bigger changes","title":"Contributing to teckfish","text":"want make bigger change, ’s good idea first file issue make sure someone team agrees ’s needed. ’ve found bug, please file issue illustrates bug minimal reprex (also help write unit test, needed).","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"pull-request-process","dir":"","previous_headings":"Bigger changes","what":"Pull request process","title":"Contributing to teckfish","text":"Fork package clone onto computer. haven’t done , recommend using usethis::create_from_github(\"\", fork = TRUE). Install development dependences devtools::install_dev_deps(), make sure package passes R CMD check running devtools::check(). R CMD check doesn’t pass cleanly, ’s good idea ask help continuing. Create Git branch pull request (PR). recommend using usethis::pr_init(\"brief-description--change\"). Make changes, commit git, create PR running usethis::pr_push(), following prompts browser. title PR briefly describe change. body PR contain Fixes #issue-number. Begin commit merge messages - indicate user facing changes included NEWS.md. use fledge automatically generate NEWS.md file.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"code-style","dir":"","previous_headings":"Bigger changes","what":"Code style","title":"Contributing to teckfish","text":"New code follow tidyverse style guide. can use styler package apply styles, please don’t restyle code nothing PR. use roxygen2, Markdown syntax, documentation. use testthat unit tests. Contributions test cases included easier accept.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contributing to teckfish","text":"Please note teckfish project released Contributor Code Conduct. contributing project agree abide terms.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2023 Teck Resources Ltd. Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/SUPPORT.html","id":null,"dir":"","previous_headings":"","what":"Getting help with teckfish","title":"Getting help with teckfish","text":"Thanks using teckfish! filing issue, places explore pieces put together make process smooth possible.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/SUPPORT.html","id":"make-sure-its-new","dir":"","previous_headings":"","what":"Make sure its new","title":"Getting help with teckfish","text":"opening new issue, sure search issues pull requests make sure bug hasn’t reported /already fixed development version. default, search pre-populated :issue :open. can edit qualifiers (e.g. :pr, :closed) needed. example, ’d simply remove :open search issues repo, open closed.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/SUPPORT.html","id":"make-a-reprex","dir":"","previous_headings":"","what":"Make a reprex","title":"Getting help with teckfish","text":"Start making minimal reproducible example using reprex package. haven’t heard used reprex , ’re treat! Seriously, reprex make R-question-asking endeavors easier (pretty insane ROI five ten minutes ’ll take learn ’s ). additional reprex pointers, check Get help! section tidyverse site.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"usage","dir":"Articles","previous_headings":"","what":"Usage","title":"Classify water temperature values","text":"","code":"data <- tibble::tribble(   ~temperature_date_time, ~water_temperature,   \"2021-05-07 00:00:00\",  40.145,   \"2021-05-07 01:00:00\",  20.257,   \"2021-05-07 02:00:00\",  6.257,   \"2021-05-07 03:00:00\",  5.245,   \"2021-05-07 04:00:00\",  2.567,   \"2021-05-07 05:00:00\",  2.687,   \"2021-05-07 06:00:00\",  2.175,   \"2021-05-07 07:00:00\",  2.817,   \"2021-05-07 08:00:00\",  2.917,   \"2021-05-07 09:00:00\",  2.817,   \"2021-05-07 10:00:00\",  2.867,   \"2021-05-07 11:00:00\",  2.817,   \"2021-05-07 12:00:00\",  2.917,   \"2021-05-07 13:00:00\",  2.817,   \"2021-05-07 14:00:00\",  2.867,   \"2021-05-07 15:00:00\",  2.877,   \"2021-05-07 16:00:00\",  3.012,   \"2021-05-07 17:00:00\",  3.045,   \"2021-05-07 18:00:00\",  3.124,   \"2021-05-07 19:00:00\",  3.268,   \"2021-05-07 20:00:00\",  3.789,   \"2021-05-07 21:00:00\",  4.104,   \"2021-05-07 22:00:00\",  4.178 ) |>   dplyr::mutate(     temperature_date_time = as.POSIXct(temperature_date_time, tz = \"UTC\")   )  classified_data <- classify_water_temp_data(data)  classified_data #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows ggplot(classified_data) +   geom_point(     aes(       x = temperature_date_time,       y = water_temperature,       color = status_id     ),     alpha = 0.5   ) +   labs(     y = \"Temperature\",     x = \"Datetime\"   ) +   theme_bw() +   scale_x_datetime(     breaks = date_breaks(\"4 hour\"),     labels = date_format(\"%H:%M\")   ) +   scale_y_continuous(     breaks = seq(-5, 45, 5),     limits = c(-2, 42)   ) +   scale_color_manual(     \"Status ID\",     values = c(       \"reasonable\" = \"black\",       \"questionable\" = \"orange\",       \"erroneous\" = \"red\"     )   )"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"changing-temperature-min-and-max-parameters","dir":"Articles","previous_headings":"Usage","what":"Changing temperature min and max parameters","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   questionable_max = 1,   erroneous_max = 20 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 questionable #>  9 2021-05-07 08:00:00                2.92 questionable #> 10 2021-05-07 09:00:00                2.82 questionable #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"changing-rate-of-change-parameters","dir":"Articles","previous_headings":"Usage","what":"Changing rate of change parameters","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   questionable_rate = 1,   erroneous_rate = 10 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"removing-the-time-buffer","dir":"Articles","previous_headings":"Usage","what":"Removing the time buffer","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   questionable_buffer = 0,   erroneous_buffer = 0 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 questionable #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 reasonable   #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"removing-the-gap-filling","dir":"Articles","previous_headings":"Usage","what":"Removing the gap filling","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   gap_range = 0 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"process","dir":"Articles","previous_headings":"","what":"Process","title":"Classify water temperature values","text":"Read logger file Create date time column name temperature_date_time Ensure temperature column named water_temperature Confirm data single deployment Run data classify_water_temp_data() function Save data csv file","code":"# install.packages(\"tidyverse\") # install.packages(\"devtools\") # devtools::install_github(\"poissonconsulting/teckfish\")  library(teckfish) library(tidyverse)  # read in logger file data <- readr::read_csv(\"path/to/file.csv\")  # create date time column data <- data |>   dplyr::mutate(     temperature_date_time = as.POSIXct(temperature_date_time, tz = \"UTC\")   )  # ensure temperature column is named water_temperature data <- data |>   dplyr::rename(     water_temperature = temperature   )  # confirm data is from a single deployment data <-   data |>   dplyr::filter(     deployment_id == \"12345\"   )  # run data through classify_water_temp_data() function classified_data <- classify_water_temp_data(data)  # save data to a csv file readr::write_csv(classified_data, \"path/to/file.csv\")"},{"path":"https://poissonconsulting.github.io/teckfish/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Joe Thorley. Author, maintainer. Ayla Pearson. Author. Sarah Lyons. Contributor. Bronwen Lewis. Contributor. Jill Brooks. Contributor. Andrew Harwood. Contributor. Sebastian Dalgarno. Contributor. Teck Resources. Funder, copyright holder.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Thorley J, Pearson (2024). teckfish: R Tools Teck Fish Aquatic Sciences Projects. R package version 0.2.1,  https://github.com/poissonconsulting/teckfish, https://poissonconsulting.github.io/teckfish/.","code":"@Manual{,   title = {teckfish: R Tools for Teck Fish and Aquatic Sciences Projects},   author = {Joe Thorley and Ayla Pearson},   year = {2024},   note = {R package version 0.2.1,  https://github.com/poissonconsulting/teckfish},   url = {https://poissonconsulting.github.io/teckfish/}, }"},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"introduction","dir":"","previous_headings":"","what":"Introduction","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"teckfish R package Teck Fish Aquatic Sciences Projects. intended used Teck staff contractors anyone else finds useful. intention eventually migrate Teck Resources RDS GitHub organization.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"","code":"# install.packages(\"remotes\") remotes::install_github(\"poissonconsulting/teckfish\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"growing-season-degree-days","dir":"","previous_headings":"Demonstration","what":"Growing Season Degree Days","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"gsdd() takes data frame date temperature column mean daily water temperature centigrade calculates growing season degree days (GSDD). gdd calculate growing degree days (GDD) date.","code":"library(teckfish) gsdd(gsdd::temperature_data) #> # A tibble: 1 × 2 #>    year  gsdd #>   <int> <dbl> #> 1  2019 3899. gdd(gsdd::temperature_data, end_date = as.Date(\"1972-08-30\")) #> # A tibble: 1 × 2 #>    year   gdd #>   <int> <dbl> #> 1  2019 3102."},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"contribution","dir":"","previous_headings":"","what":"Contribution","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"Please report issues. Pull requests always welcome.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"Please note teckfish project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Classify Water Temperature Data — classify_water_temp_data","title":"Classify Water Temperature Data — classify_water_temp_data","text":"Water temperature data either classified reasonable, questionable, erroneous status_id column.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Classify Water Temperature Data — classify_water_temp_data","text":"","code":"classify_water_temp_data(   data,   questionable_min = 0,   questionable_max = 30,   erroneous_min = -0.5,   erroneous_max = 40,   questionable_rate = 2,   erroneous_rate = 5,   questionable_buffer = 1,   erroneous_buffer = 1,   gap_range = 5 )"},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Classify Water Temperature Data — classify_water_temp_data","text":"data data frame. questionable_min numeric value indicating lower bound questionable range temperature values. questionable_max numeric value indicating upper bound questionable range temperature values. erroneous_min numeric value indicating lower bound erroneous range temperature values. erroneous_max numeric value indicating upper bound erroneous range temperature values. questionable_rate numeric value indicating rate change (temperature per hour) temperature values considered questionable. erroneous_rate numeric value indicating rate change (temperature per hour) temperature values considered erroneous. questionable_buffer numeric value indicating time buffer questionable values. erroneous_buffer numeric value indicating time buffer erroneous values. gap_range numeric value indicating range hours two non reasonable values coded questionable erroneous.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Classify Water Temperature Data — classify_water_temp_data","text":"data frame","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Classify Water Temperature Data — classify_water_temp_data","text":"function works single deployment logger. table output sorted temperature_date_time. function error columns following names used internally: status_id,  \".lag_temp\", \".diff_temp\", \".lag_time\", \".diff_time\", \".rate_temp_per_time\", \".lag_id\", \".lead_id\", \".id_row\", \".quest_higher_next_id\", \".quest_lower_next_id\", \".error_higher_next_id\", \".error_lower_next_id\", \".quest_higher_next_time\", \".quest_lower_next_time\", \".error_higher_next_time\", \".error_lower_next_time\", \".quest_higher_time_diff_h\", \".quest_lower_time_diff_h\", \".error_higher_time_diff_h\", \".error_lower_time_diff_h\", \".gap_fill_higher_time\", \".gap_fill_higher_type\", \".gap_fill_lower_time\", \".gap_fill_lower_type\", \".gap_diff_time_h\" function error missing temperature_date_time values missing. Missing values water_temperature ignored treated present. want drop values can output using tidyr::drop_na(). data processed : Classifying temperature values based values (questionable_min, questionable_max, erroneous_min, erroneous_max). 2. rate change adjacent values calculate values classified based rate parameters (questionable_rate, erroneous_rate). 3. Adjacent values questionable/erroneous coded questionable/erroneous. 4. buffer applied value within buffer classified questionable/erroneous based buffer parameters (questionable_buffer, erroneous_buffer). 5. Reasonable values identified two questionable/erroneous values coded questionable/erroneous based gap hour difference allowed (gap_range).","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Classify Water Temperature Data — classify_water_temp_data","text":"","code":"data <- data.frame(   temperature_date_time =     as.POSIXct(c(       \"2021-05-07 08:00:00\", \"2021-05-07 09:00:00\",       \"2021-05-07 10:00:00\", \"2021-05-07 11:00:00\", \"2021-05-07 12:00:00\",       \"2021-05-07 13:00:00\"     )),   water_temperature = c(4.124, 4.078, 4.102, 4.189, 4.243, 6.578) )  classified_data <- classify_water_temp_data(data)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/freshwaterfish.html","id":null,"dir":"Reference","previous_headings":"","what":"BC Fish Data — freshwaterfish","title":"BC Fish Data — freshwaterfish","text":"Curated data codes, classification conservation status freshwater fishes British Columbia.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/freshwaterfish.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"BC Fish Data — freshwaterfish","text":"","code":"freshwaterfish"},{"path":"https://poissonconsulting.github.io/teckfish/reference/freshwaterfish.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"BC Fish Data — freshwaterfish","text":"object class tbl_df (inherits tbl, data.frame) 161 rows 17 columns.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Degree Days (GDD) — gdd","title":"Calculate Growing Degree Days (GDD) — gdd","text":"wrapper gsdd::gdd() get Growing Degree Days date longest growing season.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Degree Days (GDD) — gdd","text":"","code":"gdd(x, end_date = as.Date(\"1972-09-30\"), min_length = 60, msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Degree Days (GDD) — gdd","text":"x data frame two columns date temperature. date, must class Date provides dates temperature must numeric vector provides mean daily water temperature degrees centigrade. end_date Date scalar last date within year consider (year ignored). min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). msgs flag specifying whether provide messages.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Degree Days (GDD) — gdd","text":"","code":"gdd(gsdd::temperature_data) #> # A tibble: 1 × 2 #>    year   gdd #>   <int> <dbl> #> 1  2019 3605."},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Season Degree Days (GSDD) — gsdd","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"wrapper gsdd::gsdd() get Growing Season Degree Days longest growing season.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"","code":"gsdd(x, min_length = 120, msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"x data frame two columns date temperature. date, must class Date provides dates temperature must numeric vector provides mean daily water temperature degrees centigrade. min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). msgs flag specifying whether provide messages.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"","code":"gsdd(gsdd::temperature_data) #> # A tibble: 1 × 2 #>    year  gsdd #>   <int> <dbl> #> 1  2019 3899."},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"Soft-deprecated gsdd::gsdd_vctr().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"","code":"gsdd_cf(x, ignore_truncation = FALSE, min_length = 120, msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"x numeric vector mean daily water temperature values period interest C. ignore_truncation flag specifying whether ignore truncation mean daily water temperature vector string \"start\", \"end\", \"none\" (equivalent FALSE) \"\" (equivalent TRUE) specifying type truncation ignore. min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). msgs flag specifying whether provide messages.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"non-negative real number GSDD.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"","code":"gsdd_cf(c(rep(1, 10), rep(10, 20), rep(1, 200))) #> Warning: `gsdd_cf()` was deprecated in teckfish 0.1.2. #> ℹ Please use `gsdd::gsdd_vctr()` instead. #> [1] 208 gsdd_cf(gsdd::temperature_data$temperature) #> [1] 3898.806"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Seasons (GSS) — gss","title":"Calculate Growing Seasons (GSS) — gss","text":"wrapper gsdd::gss() default get Growing Seasons ignoring truncation. information see gsdd::gss().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Seasons (GSS) — gss","text":"","code":"gss(x, min_length = 120, ignore_truncation = TRUE, pick = \"all\", msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Seasons (GSS) — gss","text":"x data frame two columns date temperature. date, must class Date provides dates temperature must numeric vector provides mean daily water temperature degrees centigrade. min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). ignore_truncation flag specifying whether ignore start truncation (end truncation always ignored). pick string specifying whether pick \"longest\", \"shortest\", \"first\" \"last\" 'season' season \"biggest\" \"smallest\" GSDD. default returned value GSDD value \"longest\" 'season'. msgs flag specifying whether provide messages.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Seasons (GSS) — gss","text":"","code":"gss(gsdd::temperature_data) #> # A tibble: 1 × 5 #> # Groups:   year [1] #>    year start_dayte end_dayte   gsdd truncation #>   <int> <date>      <date>     <dbl> <chr>      #> 1  2019 1971-03-20  1971-11-07 3899. none"},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":null,"dir":"Reference","previous_headings":"","what":"Interpolate Numeric Vector — interpolate_numeric_vector","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"Useful filling short runs missing values time series.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"","code":"interpolate_numeric_vector(x, span = 3, tails = FALSE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"x double integer vector missing values fill using linear interpolation. span whole number maximum span missing values interpolate. gap exceeds span none values interpolate. tails flag specifying whether fill missing values start end setting value closest adjacent non-missing value.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"double integer vector.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"interpolate_numeric_vector() essentially wrapper stats::approx().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"","code":"interpolate_numeric_vector(c(1,NA,4)) #> [1] 1.0 2.5 4.0 interpolate_numeric_vector(c(1L,NA,4L)) #> [1] 1 2 4 interpolate_numeric_vector(c(1,NA,NA,NA,NA,3)) #> [1]  1 NA NA NA NA  3 interpolate_numeric_vector(c(1,NA,NA,NA,NA,3), span = 4) #> [1] 1.0 1.4 1.8 2.2 2.6 3.0 interpolate_numeric_vector(c(NA,NA,10,1,NA)) #> [1] NA NA 10  1 NA interpolate_numeric_vector(c(NA,NA,10,1,NA), tails = TRUE) #> [1] 10 10 10  1  1"},{"path":"https://poissonconsulting.github.io/teckfish/reference/reexports.html","id":null,"dir":"Reference","previous_headings":"","what":"Objects exported from other packages — reexports","title":"Objects exported from other packages — reexports","text":"objects imported packages. Follow links see documentation. fishbc fbc_common_name","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/teckfish-package.html","id":null,"dir":"Reference","previous_headings":"","what":"teckfish: R Tools for Teck Fish and Aquatic Sciences Projects — teckfish-package","title":"teckfish: R Tools for Teck Fish and Aquatic Sciences Projects — teckfish-package","text":"Provides functions linearly interpolate missing values calculate growing season degree days growing degree days daily water temperature data. also exports fish codes British Columbia Alberta `fishbc` package.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/teckfish-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teckfish: R Tools for Teck Fish and Aquatic Sciences Projects — teckfish-package","text":"Maintainer: Joe Thorley joe@poissonconsulting.ca (ORCID) Authors: Ayla Pearson ayla@poissonconsulting.ca (ORCID) contributors: Sarah Lyons (ORCID) [contributor] Bronwen Lewis [contributor] Jill Brooks [contributor] Andrew Harwood [contributor] Sebastian Dalgarno (ORCID) [contributor] Teck Resources [funder, copyright holder]","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-021","dir":"Changelog","previous_headings":"","what":"teckfish 0.2.1","title":"teckfish 0.2.1","text":"Set lower default min_length = 120 gsdd_cf().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-020","dir":"Changelog","previous_headings":"","what":"teckfish 0.2.0","title":"teckfish 0.2.0","text":"Added gsdd() gdd() calculate Growing Season Degree Days Growing Degree Days data frame longest season (following decision Ecofish Lotic). Soft-deprecated gsdd_cf() gsdd::gsdd_vctr() calculate Growing Season Degree Days vector. Removed simulated_data.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"additions-0-1-0","dir":"Changelog","previous_headings":"","what":"Additions","title":"teckfish 0.1.0","text":"Added interpolate_numeric_vector() function fill missing values using linear interpolation. Added freshwaterfish data fishbc package provide British Columbian Alberta fish codes well taxonomy conservation status.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"gsdd_cf-function-0-1-0","dir":"Changelog","previous_headings":"Modifications","what":"gsdd_cf() Function","title":"teckfish 0.1.0","text":"Uses longest sequence non-missing values, must least 184 elements (otherwise returns NA), calculate Growing Season Degree Days. Returns sum Growing Season Degree Days growing ‘seasons’ although user can use pick argument specify whether instead return GSDD value \"biggest\", \"smallest\", \"longest\", \"shortest\", \"first\" \"last\" ‘season’ within sequence. ignore_truncation argument gssd_cf() now accepts \"start\" \"end\" instead \"left\" \"right\". Replaced quiet = FALSE argument msgs = TRUE.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-001","dir":"Changelog","previous_headings":"","what":"teckfish 0.0.1","title":"teckfish 0.0.1","text":"Added gsdd_cf() function implements Growing Season Degree Days algorithm described Coleman Fausch (2007) Added classify_water_temp_data() function classify raw water temperature data reasonable, questionable, unreasonable based simple criteria Added simulated_data data set.","code":""}]
+[{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement .github/. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired [Mozilla’s code conduct enforcement ladder][https://github.com/mozilla/inclusion]. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contributing to teckfish","title":"Contributing to teckfish","text":"outlines propose change teckfish.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"fixing-typos","dir":"","previous_headings":"","what":"Fixing typos","title":"Contributing to teckfish","text":"can fix typos, spelling mistakes, grammatical errors documentation directly using GitHub web interface, long changes made source file. generally means ’ll need edit roxygen2 comments .R, .Rd file. can find .R file generates .Rd reading comment first line.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"bigger-changes","dir":"","previous_headings":"","what":"Bigger changes","title":"Contributing to teckfish","text":"want make bigger change, ’s good idea first file issue make sure someone team agrees ’s needed. ’ve found bug, please file issue illustrates bug minimal reprex (also help write unit test, needed).","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"pull-request-process","dir":"","previous_headings":"Bigger changes","what":"Pull request process","title":"Contributing to teckfish","text":"Fork package clone onto computer. haven’t done , recommend using usethis::create_from_github(\"\", fork = TRUE). Install development dependences devtools::install_dev_deps(), make sure package passes R CMD check running devtools::check(). R CMD check doesn’t pass cleanly, ’s good idea ask help continuing. Create Git branch pull request (PR). recommend using usethis::pr_init(\"brief-description--change\"). Make changes, commit git, create PR running usethis::pr_push(), following prompts browser. title PR briefly describe change. body PR contain Fixes #issue-number. Begin commit merge messages - indicate user facing changes included NEWS.md. use fledge automatically generate NEWS.md file.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"code-style","dir":"","previous_headings":"Bigger changes","what":"Code style","title":"Contributing to teckfish","text":"New code follow tidyverse style guide. can use styler package apply styles, please don’t restyle code nothing PR. use roxygen2, Markdown syntax, documentation. use testthat unit tests. Contributions test cases included easier accept.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contributing to teckfish","text":"Please note teckfish project released Contributor Code Conduct. contributing project agree abide terms.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2023 Teck Resources Ltd. Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/SUPPORT.html","id":null,"dir":"","previous_headings":"","what":"Getting help with teckfish","title":"Getting help with teckfish","text":"Thanks using teckfish! filing issue, places explore pieces put together make process smooth possible.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/SUPPORT.html","id":"make-sure-its-new","dir":"","previous_headings":"","what":"Make sure its new","title":"Getting help with teckfish","text":"opening new issue, sure search issues pull requests make sure bug hasn’t reported /already fixed development version. default, search pre-populated :issue :open. can edit qualifiers (e.g. :pr, :closed) needed. example, ’d simply remove :open search issues repo, open closed.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/SUPPORT.html","id":"make-a-reprex","dir":"","previous_headings":"","what":"Make a reprex","title":"Getting help with teckfish","text":"Start making minimal reproducible example using reprex package. haven’t heard used reprex , ’re treat! Seriously, reprex make R-question-asking endeavors easier (pretty insane ROI five ten minutes ’ll take learn ’s ). additional reprex pointers, check Get help! section tidyverse site.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"usage","dir":"Articles","previous_headings":"","what":"Usage","title":"Classify water temperature values","text":"","code":"data <- tibble::tribble(   ~temperature_date_time, ~water_temperature,   \"2021-05-07 00:00:00\",  40.145,   \"2021-05-07 01:00:00\",  20.257,   \"2021-05-07 02:00:00\",  6.257,   \"2021-05-07 03:00:00\",  5.245,   \"2021-05-07 04:00:00\",  2.567,   \"2021-05-07 05:00:00\",  2.687,   \"2021-05-07 06:00:00\",  2.175,   \"2021-05-07 07:00:00\",  2.817,   \"2021-05-07 08:00:00\",  2.917,   \"2021-05-07 09:00:00\",  2.817,   \"2021-05-07 10:00:00\",  2.867,   \"2021-05-07 11:00:00\",  2.817,   \"2021-05-07 12:00:00\",  2.917,   \"2021-05-07 13:00:00\",  2.817,   \"2021-05-07 14:00:00\",  2.867,   \"2021-05-07 15:00:00\",  2.877,   \"2021-05-07 16:00:00\",  3.012,   \"2021-05-07 17:00:00\",  3.045,   \"2021-05-07 18:00:00\",  3.124,   \"2021-05-07 19:00:00\",  3.268,   \"2021-05-07 20:00:00\",  3.789,   \"2021-05-07 21:00:00\",  4.104,   \"2021-05-07 22:00:00\",  4.178 ) |>   dplyr::mutate(     temperature_date_time = as.POSIXct(temperature_date_time, tz = \"UTC\")   )  classified_data <- classify_water_temp_data(data)  classified_data #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows ggplot(classified_data) +   geom_point(     aes(       x = temperature_date_time,       y = water_temperature,       color = status_id     ),     alpha = 0.5   ) +   labs(     y = \"Temperature\",     x = \"Datetime\"   ) +   theme_bw() +   scale_x_datetime(     breaks = date_breaks(\"4 hour\"),     labels = date_format(\"%H:%M\")   ) +   scale_y_continuous(     breaks = seq(-5, 45, 5),     limits = c(-2, 42)   ) +   scale_color_manual(     \"Status ID\",     values = c(       \"reasonable\" = \"black\",       \"questionable\" = \"orange\",       \"erroneous\" = \"red\"     )   )"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"changing-temperature-min-and-max-parameters","dir":"Articles","previous_headings":"Usage","what":"Changing temperature min and max parameters","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   questionable_max = 1,   erroneous_max = 20 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 questionable #>  9 2021-05-07 08:00:00                2.92 questionable #> 10 2021-05-07 09:00:00                2.82 questionable #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"changing-rate-of-change-parameters","dir":"Articles","previous_headings":"Usage","what":"Changing rate of change parameters","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   questionable_rate = 1,   erroneous_rate = 10 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"removing-the-time-buffer","dir":"Articles","previous_headings":"Usage","what":"Removing the time buffer","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   questionable_buffer = 0,   erroneous_buffer = 0 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 questionable #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 reasonable   #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"removing-the-gap-filling","dir":"Articles","previous_headings":"Usage","what":"Removing the gap filling","title":"Classify water temperature values","text":"","code":"classify_water_temp_data(   data,   gap_range = 0 ) #> # A tibble: 23 × 3 #>    temperature_date_time water_temperature status_id    #>    <dttm>                            <dbl> <ord>        #>  1 2021-05-07 00:00:00               40.1  erroneous    #>  2 2021-05-07 01:00:00               20.3  erroneous    #>  3 2021-05-07 02:00:00                6.26 erroneous    #>  4 2021-05-07 03:00:00                5.24 erroneous    #>  5 2021-05-07 04:00:00                2.57 erroneous    #>  6 2021-05-07 05:00:00                2.69 questionable #>  7 2021-05-07 06:00:00                2.17 questionable #>  8 2021-05-07 07:00:00                2.82 reasonable   #>  9 2021-05-07 08:00:00                2.92 reasonable   #> 10 2021-05-07 09:00:00                2.82 reasonable   #> # ℹ 13 more rows"},{"path":"https://poissonconsulting.github.io/teckfish/articles/classify-water-temp.html","id":"process","dir":"Articles","previous_headings":"","what":"Process","title":"Classify water temperature values","text":"Read logger file Create date time column name temperature_date_time Ensure temperature column named water_temperature Confirm data single deployment Run data classify_water_temp_data() function Save data csv file","code":"# install.packages(\"tidyverse\") # install.packages(\"devtools\") # devtools::install_github(\"poissonconsulting/teckfish\")  library(teckfish) library(tidyverse)  # read in logger file data <- readr::read_csv(\"path/to/file.csv\")  # create date time column data <- data |>   dplyr::mutate(     temperature_date_time = as.POSIXct(temperature_date_time, tz = \"UTC\")   )  # ensure temperature column is named water_temperature data <- data |>   dplyr::rename(     water_temperature = temperature   )  # confirm data is from a single deployment data <-   data |>   dplyr::filter(     deployment_id == \"12345\"   )  # run data through classify_water_temp_data() function classified_data <- classify_water_temp_data(data)  # save data to a csv file readr::write_csv(classified_data, \"path/to/file.csv\")"},{"path":"https://poissonconsulting.github.io/teckfish/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Joe Thorley. Author, maintainer. Ayla Pearson. Author. Sarah Lyons. Contributor. Bronwen Lewis. Contributor. Jill Brooks. Contributor. Andrew Harwood. Contributor. Sebastian Dalgarno. Contributor. Teck Resources. Funder, copyright holder.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Thorley J, Pearson (2024). teckfish: R Tools Teck Fish Aquatic Sciences Projects. R package version 0.3.0,  https://github.com/poissonconsulting/teckfish, https://poissonconsulting.github.io/teckfish/.","code":"@Manual{,   title = {teckfish: R Tools for Teck Fish and Aquatic Sciences Projects},   author = {Joe Thorley and Ayla Pearson},   year = {2024},   note = {R package version 0.3.0,  https://github.com/poissonconsulting/teckfish},   url = {https://poissonconsulting.github.io/teckfish/}, }"},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"introduction","dir":"","previous_headings":"","what":"Introduction","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"teckfish R package Teck Fish Aquatic Sciences Projects. intended used Teck staff contractors anyone else finds useful. intention eventually migrate Teck Resources RDS GitHub organization.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"","code":"# install.packages(\"remotes\") remotes::install_github(\"poissonconsulting/teckfish\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"growing-season-degree-days","dir":"","previous_headings":"Demonstration","what":"Growing Season Degree Days","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"gsdd() takes data frame date temperature column mean daily water temperature centigrade calculates growing season degree days (GSDD). gdd calculate growing degree days (GDD) date.","code":"library(teckfish) gsdd(gsdd::temperature_data) #> # A tibble: 1 × 2 #>    year  gsdd #>   <int> <dbl> #> 1  2019 3899. gdd(gsdd::temperature_data, end_date = as.Date(\"1972-08-30\")) #> # A tibble: 1 × 2 #>    year   gdd #>   <int> <dbl> #> 1  2019 3102."},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"contribution","dir":"","previous_headings":"","what":"Contribution","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"Please report issues. Pull requests always welcome.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"R Tools for Teck Fish and Aquatic Sciences Projects","text":"Please note teckfish project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Classify Water Temperature Data — classify_water_temp_data","title":"Classify Water Temperature Data — classify_water_temp_data","text":"Water temperature data either classified reasonable, questionable, erroneous status_id column.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Classify Water Temperature Data — classify_water_temp_data","text":"","code":"classify_water_temp_data(   data,   questionable_min = 0,   questionable_max = 30,   erroneous_min = -0.5,   erroneous_max = 40,   questionable_rate = 2,   erroneous_rate = 5,   questionable_buffer = 1,   erroneous_buffer = 1,   gap_range = 5 )"},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Classify Water Temperature Data — classify_water_temp_data","text":"data data frame. questionable_min numeric value indicating lower bound questionable range temperature values. questionable_max numeric value indicating upper bound questionable range temperature values. erroneous_min numeric value indicating lower bound erroneous range temperature values. erroneous_max numeric value indicating upper bound erroneous range temperature values. questionable_rate numeric value indicating rate change (temperature per hour) temperature values considered questionable. erroneous_rate numeric value indicating rate change (temperature per hour) temperature values considered erroneous. questionable_buffer numeric value indicating time buffer questionable values. erroneous_buffer numeric value indicating time buffer erroneous values. gap_range numeric value indicating range hours two non reasonable values coded questionable erroneous.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Classify Water Temperature Data — classify_water_temp_data","text":"data frame","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Classify Water Temperature Data — classify_water_temp_data","text":"function works single deployment logger. table output sorted temperature_date_time. function error columns following names used internally: status_id,  \".lag_temp\", \".diff_temp\", \".lag_time\", \".diff_time\", \".rate_temp_per_time\", \".lag_id\", \".lead_id\", \".id_row\", \".quest_higher_next_id\", \".quest_lower_next_id\", \".error_higher_next_id\", \".error_lower_next_id\", \".quest_higher_next_time\", \".quest_lower_next_time\", \".error_higher_next_time\", \".error_lower_next_time\", \".quest_higher_time_diff_h\", \".quest_lower_time_diff_h\", \".error_higher_time_diff_h\", \".error_lower_time_diff_h\", \".gap_fill_higher_time\", \".gap_fill_higher_type\", \".gap_fill_lower_time\", \".gap_fill_lower_type\", \".gap_diff_time_h\" function error missing temperature_date_time values missing. Missing values water_temperature ignored treated present. want drop values can output using tidyr::drop_na(). data processed : Classifying temperature values based values (questionable_min, questionable_max, erroneous_min, erroneous_max). 2. rate change adjacent values calculate values classified based rate parameters (questionable_rate, erroneous_rate). 3. Adjacent values questionable/erroneous coded questionable/erroneous. 4. buffer applied value within buffer classified questionable/erroneous based buffer parameters (questionable_buffer, erroneous_buffer). 5. Reasonable values identified two questionable/erroneous values coded questionable/erroneous based gap hour difference allowed (gap_range).","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/classify_water_temp_data.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Classify Water Temperature Data — classify_water_temp_data","text":"","code":"data <- data.frame(   temperature_date_time =     as.POSIXct(c(       \"2021-05-07 08:00:00\", \"2021-05-07 09:00:00\",       \"2021-05-07 10:00:00\", \"2021-05-07 11:00:00\", \"2021-05-07 12:00:00\",       \"2021-05-07 13:00:00\"     )),   water_temperature = c(4.124, 4.078, 4.102, 4.189, 4.243, 6.578) )  classified_data <- classify_water_temp_data(data)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/freshwaterfish.html","id":null,"dir":"Reference","previous_headings":"","what":"BC Fish Data — freshwaterfish","title":"BC Fish Data — freshwaterfish","text":"Curated data codes, classification conservation status freshwater fishes British Columbia.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/freshwaterfish.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"BC Fish Data — freshwaterfish","text":"","code":"freshwaterfish"},{"path":"https://poissonconsulting.github.io/teckfish/reference/freshwaterfish.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"BC Fish Data — freshwaterfish","text":"object class tbl_df (inherits tbl, data.frame) 161 rows 17 columns.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Degree Days (GDD) — gdd","title":"Calculate Growing Degree Days (GDD) — gdd","text":"wrapper gsdd::gdd() get Growing Degree Days date longest growing season.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Degree Days (GDD) — gdd","text":"","code":"gdd(x, end_date = as.Date(\"1972-09-30\"), min_length = 60, msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Degree Days (GDD) — gdd","text":"x data frame two columns date temperature. date, must class Date provides dates temperature must numeric vector provides mean daily water temperature degrees centigrade. end_date Date scalar last date within year consider (year ignored). min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). msgs flag specifying whether provide messages.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gdd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Degree Days (GDD) — gdd","text":"","code":"gdd(gsdd::temperature_data) #> # A tibble: 1 × 2 #>    year   gdd #>   <int> <dbl> #> 1  2019 3605."},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Season Degree Days (GSDD) — gsdd","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"wrapper gsdd::gsdd() get Growing Season Degree Days longest growing season.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"","code":"gsdd(x, min_length = 120, msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"x data frame two columns date temperature. date, must class Date provides dates temperature must numeric vector provides mean daily water temperature degrees centigrade. min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). msgs flag specifying whether provide messages.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Season Degree Days (GSDD) — gsdd","text":"","code":"gsdd(gsdd::temperature_data) #> # A tibble: 1 × 2 #>    year  gsdd #>   <int> <dbl> #> 1  2019 3899."},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"Soft-deprecated gsdd::gsdd_vctr().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"","code":"gsdd_cf(x, ignore_truncation = FALSE, min_length = 120, msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"x numeric vector mean daily water temperature values period interest C. ignore_truncation flag specifying whether ignore truncation mean daily water temperature vector string \"start\", \"end\", \"none\" (equivalent FALSE) \"\" (equivalent TRUE) specifying type truncation ignore. min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). msgs flag specifying whether provide messages.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"non-negative real number GSDD.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gsdd_cf.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Season Degree Days (GSDD) — gsdd_cf","text":"","code":"gsdd_cf(c(rep(1, 10), rep(10, 20), rep(1, 200))) #> Warning: `gsdd_cf()` was deprecated in teckfish 0.1.2. #> ℹ Please use `gsdd::gsdd_vctr()` instead. #> [1] 208 gsdd_cf(gsdd::temperature_data$temperature) #> [1] 3898.806"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate Growing Seasons (GSS) — gss","title":"Calculate Growing Seasons (GSS) — gss","text":"wrapper gsdd::gss() default get Growing Seasons ignoring truncation. information see gsdd::gss().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate Growing Seasons (GSS) — gss","text":"","code":"gss(x, min_length = 120, ignore_truncation = TRUE, pick = \"all\", msgs = TRUE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate Growing Seasons (GSS) — gss","text":"x data frame two columns date temperature. date, must class Date provides dates temperature must numeric vector provides mean daily water temperature degrees centigrade. min_length whole number minimum length consider. Must least twice window width 365. NULL set difference start_date end_date (ignoring year). ignore_truncation flag specifying whether ignore start truncation (end truncation always ignored). pick string specifying whether pick \"longest\", \"shortest\", \"first\" \"last\" 'season' season \"biggest\" \"smallest\" GSDD. default returned value GSDD value \"longest\" 'season'. msgs flag specifying whether provide messages.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/gss.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate Growing Seasons (GSS) — gss","text":"","code":"gss(gsdd::temperature_data) #> # A tibble: 1 × 5 #> # Groups:   year [1] #>    year start_dayte end_dayte   gsdd truncation #>   <int> <date>      <date>     <dbl> <chr>      #> 1  2019 1971-03-20  1971-11-07 3899. none"},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":null,"dir":"Reference","previous_headings":"","what":"Interpolate Numeric Vector — interpolate_numeric_vector","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"Useful filling short runs missing values time series.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"","code":"interpolate_numeric_vector(x, span = 3, tails = FALSE)"},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"x double integer vector missing values fill using linear interpolation. span whole number maximum span missing values interpolate. gap exceeds span none values interpolate. tails flag specifying whether fill missing values start end setting value closest adjacent non-missing value.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"double integer vector.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"interpolate_numeric_vector() essentially wrapper stats::approx().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/interpolate_numeric_vector.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Interpolate Numeric Vector — interpolate_numeric_vector","text":"","code":"interpolate_numeric_vector(c(1,NA,4)) #> [1] 1.0 2.5 4.0 interpolate_numeric_vector(c(1L,NA,4L)) #> [1] 1 2 4 interpolate_numeric_vector(c(1,NA,NA,NA,NA,3)) #> [1]  1 NA NA NA NA  3 interpolate_numeric_vector(c(1,NA,NA,NA,NA,3), span = 4) #> [1] 1.0 1.4 1.8 2.2 2.6 3.0 interpolate_numeric_vector(c(NA,NA,10,1,NA)) #> [1] NA NA 10  1 NA interpolate_numeric_vector(c(NA,NA,10,1,NA), tails = TRUE) #> [1] 10 10 10  1  1"},{"path":"https://poissonconsulting.github.io/teckfish/reference/reexports.html","id":null,"dir":"Reference","previous_headings":"","what":"Objects exported from other packages — reexports","title":"Objects exported from other packages — reexports","text":"objects imported packages. Follow links see documentation. fishbc fbc_common_name","code":""},{"path":"https://poissonconsulting.github.io/teckfish/reference/teckfish-package.html","id":null,"dir":"Reference","previous_headings":"","what":"teckfish: R Tools for Teck Fish and Aquatic Sciences Projects — teckfish-package","title":"teckfish: R Tools for Teck Fish and Aquatic Sciences Projects — teckfish-package","text":"Provides functions linearly interpolate missing values calculate growing season degree days growing degree days daily water temperature data. also exports fish codes British Columbia Alberta `fishbc` package.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/reference/teckfish-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"teckfish: R Tools for Teck Fish and Aquatic Sciences Projects — teckfish-package","text":"Maintainer: Joe Thorley joe@poissonconsulting.ca (ORCID) Authors: Ayla Pearson ayla@poissonconsulting.ca (ORCID) contributors: Sarah Lyons (ORCID) [contributor] Bronwen Lewis [contributor] Jill Brooks [contributor] Andrew Harwood [contributor] Sebastian Dalgarno (ORCID) [contributor] Teck Resources [funder, copyright holder]","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-030","dir":"Changelog","previous_headings":"","what":"teckfish 0.3.0","title":"teckfish 0.3.0","text":"Added gss() function gsdd package calculate growing seasons.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-021","dir":"Changelog","previous_headings":"","what":"teckfish 0.2.1","title":"teckfish 0.2.1","text":"Set lower default min_length = 120 gsdd_cf().","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-020","dir":"Changelog","previous_headings":"","what":"teckfish 0.2.0","title":"teckfish 0.2.0","text":"Added gsdd() gdd() calculate Growing Season Degree Days Growing Degree Days data frame longest season (following decision Ecofish Lotic). Soft-deprecated gsdd_cf() gsdd::gsdd_vctr() calculate Growing Season Degree Days vector. Removed simulated_data.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"additions-0-1-0","dir":"Changelog","previous_headings":"","what":"Additions","title":"teckfish 0.1.0","text":"Added interpolate_numeric_vector() function fill missing values using linear interpolation. Added freshwaterfish data fishbc package provide British Columbian Alberta fish codes well taxonomy conservation status.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"gsdd_cf-function-0-1-0","dir":"Changelog","previous_headings":"Modifications","what":"gsdd_cf() Function","title":"teckfish 0.1.0","text":"Uses longest sequence non-missing values, must least 184 elements (otherwise returns NA), calculate Growing Season Degree Days. Returns sum Growing Season Degree Days growing ‘seasons’ although user can use pick argument specify whether instead return GSDD value \"biggest\", \"smallest\", \"longest\", \"shortest\", \"first\" \"last\" ‘season’ within sequence. ignore_truncation argument gssd_cf() now accepts \"start\" \"end\" instead \"left\" \"right\". Replaced quiet = FALSE argument msgs = TRUE.","code":""},{"path":"https://poissonconsulting.github.io/teckfish/news/index.html","id":"teckfish-001","dir":"Changelog","previous_headings":"","what":"teckfish 0.0.1","title":"teckfish 0.0.1","text":"Added gsdd_cf() function implements Growing Season Degree Days algorithm described Coleman Fausch (2007) Added classify_water_temp_data() function classify raw water temperature data reasonable, questionable, unreasonable based simple criteria Added simulated_data data set.","code":""}]