diff --git a/404.html b/404.html index 4eef770..a532660 100644 --- a/404.html +++ b/404.html @@ -12,13 +12,15 @@ - + + - + + @@ -76,7 +78,7 @@
-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html index 9da0deb..01b6901 100644 --- a/CODE_OF_CONDUCT.html +++ b/CODE_OF_CONDUCT.html @@ -1,5 +1,5 @@ -Contributor Covenant Code of Conduct • ypr +Contributor Covenant Code of Conduct • ypr Skip to contents @@ -113,7 +113,7 @@

Attribution -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/CONTRIBUTING.html b/CONTRIBUTING.html index d7d8687..7a987dc 100644 --- a/CONTRIBUTING.html +++ b/CONTRIBUTING.html @@ -1,5 +1,5 @@ -Contributing to ypr • ypr +Contributing to ypr • ypr Skip to contents @@ -76,7 +76,7 @@

Code of Conduct
-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/LICENSE-text.html b/LICENSE-text.html index 675f2d9..7ac3890 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -1,5 +1,5 @@ -License • ypr +License • ypr Skip to contents @@ -48,7 +48,7 @@
-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/LICENSE.html b/LICENSE.html index 3d896fe..e0728bd 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -1,5 +1,5 @@ -MIT License • ypr +MIT License • ypr Skip to contents @@ -52,7 +52,7 @@
-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/SUPPORT.html b/SUPPORT.html index c2d2b83..e01f6b9 100644 --- a/SUPPORT.html +++ b/SUPPORT.html @@ -1,5 +1,5 @@ -Getting help with ypr • ypr +Getting help with ypr • ypr Skip to contents @@ -58,7 +58,7 @@

Make a reprex -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/articles/ecotypes.html b/articles/ecotypes.html index afe86ea..8028189 100644 --- a/articles/ecotypes.html +++ b/articles/ecotypes.html @@ -12,13 +12,15 @@ - + + - + + Skip to contents @@ -68,7 +70,7 @@

Joe Thorley and Ayla Pearson

-

2024-09-10

+

2024-10-18

Source: vignettes/ecotypes.Rmd
ecotypes.Rmd
@@ -104,15 +106,16 @@

Two Ecotypesecotypes <- ypr_ecotypes( Linf2 = 200, L2 = c(100, 50), - Ls = c(50, 75), + Ls = c(50, 75), pi = 0.05, names = c("small", "large"), - RPR = c(0.8, 0.2)) + RPR = c(0.8, 0.2) +) ypr_plot_schedule(ecotypes) + scale_color_manual(values = c("black", "blue")) 

-ypr_plot_schedule(ecotypes, x = "Age", y  = "Spawning") + scale_color_manual(values = c("black", "blue"))
+ypr_plot_schedule(ecotypes, x = "Age", y = "Spawning") + scale_color_manual(values = c("black", "blue"))

Fish @@ -164,7 +167,7 @@

Yield

-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/articles/ecotypes_files/figure-html/unnamed-chunk-1-1.png b/articles/ecotypes_files/figure-html/unnamed-chunk-1-1.png index 14cc221..c815b37 100644 Binary files a/articles/ecotypes_files/figure-html/unnamed-chunk-1-1.png and b/articles/ecotypes_files/figure-html/unnamed-chunk-1-1.png differ diff --git a/articles/ecotypes_files/figure-html/unnamed-chunk-1-2.png b/articles/ecotypes_files/figure-html/unnamed-chunk-1-2.png index 3d57fcb..9cad76c 100644 Binary files a/articles/ecotypes_files/figure-html/unnamed-chunk-1-2.png and b/articles/ecotypes_files/figure-html/unnamed-chunk-1-2.png differ diff --git a/articles/index.html b/articles/index.html index 7b227a9..8e32a8c 100644 --- a/articles/index.html +++ b/articles/index.html @@ -1,5 +1,5 @@ -Articles • ypr +Articles • ypr Skip to contents @@ -52,7 +52,7 @@

All vignettes

-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/articles/ypr.html b/articles/ypr.html index 7f925c9..0a5063e 100644 --- a/articles/ypr.html +++ b/articles/ypr.html @@ -12,13 +12,15 @@ - + + - + + Skip to contents @@ -68,7 +70,7 @@

Joe Thorley

-

2024-09-10

+

2024-10-18

Source: vignettes/ypr.Rmd
ypr.Rmd
@@ -288,10 +290,10 @@

Growth

Length

-

In ypr length (in cm) at age -(tt) -is assumed to follow a Von Bertalanffy growth curve

-

L=L∞⋅(1−exp(−k⋅(t−t0)))L = L_{\infty} \cdot (1 - \exp(-k \cdot (t-t_0)))

+

In ypr length (in cm) at age (t) is assumed to follow a Von Bertalanffy +growth curve

+

L = L_{\infty} \cdot (1 - \exp(-k \cdot +(t-t_0)))

 population <- ypr_population()
 ypr_plot_schedule(population, "Age", "Length")
@@ -309,17 +311,14 @@

Length

Weight

-

The weight -(WW) -at a given length is assumed to follow the classic allometric -relationship

-

W=wα⋅LwβW = w_\alpha \cdot L^{w_\beta}

+

The weight (W) at a given length is +assumed to follow the classic allometric relationship

+

W = w_\alpha \cdot L^{w_\beta}

 population <- ypr_population_update(population, Wa = 0.01, Wb = 3)
 ypr_plot_schedule(population, "Length", "Weight")

-

Its worth noting that -wαw_\alpha, +

Its worth noting that w_\alpha, which is the extrapolated weight (g) of a 1 cm individual, is a scaling constant that only affects the estimate of the yield (when calculated in terms of the biomass), ie, it does not affect the estimate of the @@ -332,26 +331,23 @@

Reproduction

Fecundity

-

The fecundity -(FF) -is assumed to scale allometrically with the weight according to the -equation

-

F=fα⋅WfβF = f_\alpha \cdot W^{f_\beta}

+

The fecundity (F) is assumed to +scale allometrically with the weight according to the equation

+

F = f_\alpha \cdot W^{f_\beta}

 population <- ypr_population_update(population, fa = 1, fb = 1)
 ypr_plot_schedule(population, "Weight", "Fecundity")

-

fαf_\alpha, -which is the extrapolated eggs produced by a 1 g female, is a scaling -constant with no effect on the yield or optimal capture rate.

+

f_\alpha, which is the extrapolated +eggs produced by a 1 g female, is a scaling constant with no effect on +the yield or optimal capture rate.

Spawning

-

The probability of spawning at length -LL -is determined by the equation

-

S=LSpLsSp+LSp⋅esS = \frac{L^{S_p}}{L_s^{S_p} + L^{S_p}} \cdot es

+

The probability of spawning at length L is determined by the equation

+

S = \frac{L^{S_p}}{L_s^{S_p} + L^{S_p}} +\cdot es

 population <- ypr_population_update(population, Ls = 50, Sp = 10, es = 0.8)
 ypr_plot_schedule(population, "Length", "Spawning")
@@ -364,9 +360,7 @@

Death

Natural Mortality

-

By default the natural annual interval mortality rate -(nn) -is assumed to be constant

+

By default the natural annual interval mortality rate (n) is assumed to be constant

 ypr_plot_schedule(population, "Length", "NaturalMortality")

@@ -384,41 +378,27 @@

Natural Mortality

Fishing Mortality

-

The vulnerability to capture -(VV) -is assumed to vary by length as follows

-

V=LVpLvVp+LVpV = \frac{L^{V_p}}{L_v^{V_p} + L^{V_p}}

+

The vulnerability to capture (V) is +assumed to vary by length as follows

+

V = \frac{L^{V_p}}{L_v^{V_p} + +L^{V_p}}

 population <- ypr_population_update(population, Lv = 50, Vp = 50)
 ypr_plot_schedule(population, "Length", "Vulnerability")

-

If -VpV_p -is 100 then vulnerability is effectively knife-edged.

-

The probabilty of being retained if captured -(RR) -depends on the release rate -(ρ\rho), -the slot limits -(LloL_{lo} -and -LupL_{up}) -and the non-compliance with the limits -(NcN_c)

+

If V_p is 100 then vulnerability is +effectively knife-edged.

+

The probabilty of being retained if captured (R) depends on the release rate (\rho), the slot limits (L_{lo} and L_{up}) and the non-compliance with the +limits (N_c)

 population <- ypr_population_update(population, rho = 0.5, Llo = 40, Lup = 70, Nc = 0.1)
 ypr_plot_schedule(population, "Length", "Retention")

-

The fishing mortality -(UU) -depends on -VV, -RR -and the probability of capture when fully vulnerable -(pipi) -as well as the hooking mortality -(HmH_m)

-

U=V⋅π⋅R+V⋅π⋅(1−R)⋅HmU = V \cdot \pi \cdot R + V \cdot \pi \cdot (1 - R) \cdot H_m

+

The fishing mortality (U) depends on +V, R +and the probability of capture when fully vulnerable (pi) as well as the hooking mortality (H_m)

+

U = V \cdot \pi \cdot R + V \cdot \pi +\cdot (1 - R) \cdot H_m

The calculation assumes that a released fish cannot be recaught in the same year.

@@ -433,131 +413,124 @@ 
RecruitmentRkR_k)
-and the recruitment age
-(RtR_t;
-by default 1) to be defined.

-
If recruitment follows a Beverton-Holt
-(BH=1BH = 1)
-curve then

-
R=α⋅E(β⋅E+1)R = \frac{\alpha \cdot E}{(\beta \cdot E + 1)}

+density (R_k) and the recruitment age
+(R_t; by default 1) to be defined.

+
If recruitment follows a Beverton-Holt (BH
+= 1) curve then

+
R = \frac{\alpha \cdot E}{(\beta \cdot E +
+1)}

 
 population <- ypr_population_update(population, Rk = 3)
 ypr_plot_sr(population, plot_values = FALSE)

 

-
where
-EE
-is the annual eggs (stock) and
-RR
-is the annual recruits at age
-RtR_t.

-
With a Ricker curve
-(BH=0BH = 0)
-the relationship is as follows

-
R=α⋅E⋅exp(−β⋅E)R = \alpha \cdot E \cdot \exp (-\beta \cdot E)

+
where E is the annual eggs (stock)
+and R is the annual recruits at age
+R_t.

+
With a Ricker curve (BH = 0) the
+relationship is as follows

+
R = \alpha \cdot E \cdot \exp (-\beta
+\cdot E)

 
 population <- ypr_population_update(population, BH = 0L)
 ypr_plot_sr(population, plot_values = FALSE)

 

-
The number of recruits at the carrying capacity
-(RmaxR_\text{max})
-is a scaling constant that only affects the estimate of the yield.

+
The number of recruits at the carrying capacity (R_\text{max}) is a scaling constant that only
+affects the estimate of the yield.

 
Before calculating the recruitment it is important to introduce the
-concept of the (unfished) survivorship
-(lxalx_a)
-which is the probability of a recruit surviving to age
-aa
-in the absence of fish mortality.

+concept of the (unfished) survivorship (lx_a) which is the probability of a recruit
+surviving to age a in the absence of
+fish mortality.

 
 ypr_plot_schedule(population, "Age", "Survivorship")

 

-
The unfished survivorship
-(lxalx_a)
-is defined recursively by

-
lxRt=1,lxa=lxa−1⋅(1−Na−1)fora>Rtlx_{R_t} = 1, lx_a = lx_{a-1} \cdot (1-N_{a-1}) \;\text{for}\; a > R_t
-where
-NaN_a
-is the annual interval natural mortality at age
-aa.

-
And the fished survivorship
-(lxaFlx_a^F)
+
The unfished survivorship (lx_a) is
+defined recursively by

+
lx_{R_t} = 1, lx_a = lx_{a-1} \cdot
+(1-N_{a-1}) \;\text{for}\; a > R_t where N_a is the annual interval natural mortality
+at age a.

+
And the fished survivorship (lx_a^F)
 is

-
lxRtF=1,lxaF=lxa−1F⋅(1−(1−Na−1)⋅(1−Ua−1))fora>Rtlx_{R_t}^F = 1, lx_a^F = lx_{a-1}^F \cdot (1 - (1 - N_{a-1}) \cdot (1 - U_{a-1})) \;\text{for}\; a > R_t

-
The lifetime number of eggs deposited per (unfished) recruit
-(ϕ\phi)
-is then just

-
ϕ=∑a=Rttmaxlxa⋅Fa/2⋅Sa\phi = \sum_{a = R_t}^{t_\text{max}} lx_a \cdot F_a/2 \cdot S_a
-where
-tmaxt_\text{max}
-is the maximum age considered (by default 20) and
-FaF_a
-the fecundity at age
-aa
-is divided by two as the sex ratio is assumed to 1:1 and
-SaS_a
-is the probability of spawning.

-
The fished equivalent is denoted
-ϕF\phi_F.

+
lx_{R_t}^F = 1, lx_a^F = lx_{a-1}^F \cdot
+(1 - (1 - N_{a-1}) \cdot (1 - U_{a-1})) \;\text{for}\; a >
+R_t

+
The lifetime number of eggs deposited per (unfished) recruit (\phi) is then just

+
\phi = \sum_{a = R_t}^{t_\text{max}} lx_a
+\cdot F_a/2 \cdot S_a where t_\text{max} is the maximum age considered
+(by default 20) and F_a the fecundity
+at age a is divided by two as the sex
+ratio is assumed to 1:1 and S_a is the
+probability of spawning.

+
The fished equivalent is denoted \phi_F.

 
It important to realize that at the unfished equilibrium the annual
-number of recruits
-(R0R_0)
-is related to the annual egg deposition according to the following
-equation

-
E0=ϕ⋅R0E_0 = \phi \cdot R_0

+number of recruits (R_0) is related to
+the annual egg deposition according to the following equation

+
E_0 = \phi \cdot R_0

 
By definition

-
α=Rk⋅R0E0=Rkϕ\alpha = \frac{R_k \cdot R_0}{E_0} = \frac{R_k}{\phi}

-
The
-β\beta
-term of the Beverton-Holt curve can then be found by rearranging the
-following formula

-
R0=α⋅ϕ⋅R0β⋅ϕ⋅R0+1R_0 = \frac{\alpha \cdot \phi \cdot R_0}{\beta \cdot \phi \cdot R_0 + 1}

-
β⋅ϕ⋅R0+1=α⋅ϕ\beta \cdot \phi \cdot R_0 + 1 = \alpha \cdot \phi

-
β=α⋅ϕ−1ϕ⋅R0\beta = \frac{\alpha \cdot \phi - 1}{\phi \cdot R_0}

+
\alpha = \frac{R_k \cdot R_0}{E_0} =
+\frac{R_k}{\phi}

+
The \beta term of the Beverton-Holt
+curve can then be found by rearranging the following formula

+
R_0 = \frac{\alpha \cdot \phi \cdot
+R_0}{\beta \cdot \phi \cdot R_0 + 1}

+
\beta \cdot \phi \cdot R_0 + 1 = \alpha
+\cdot \phi

+
\beta = \frac{\alpha \cdot \phi - 1}{\phi
+\cdot R_0}

 
The equivalent equation for the Ricker curve is arrived at as
 follows

-
R0=α⋅ϕ⋅R0⋅exp(−β⋅ϕ⋅R0)R_0 = \alpha \cdot \phi \cdot R_0 \cdot \exp (-\beta \cdot \phi \cdot R_0)

-
1exp(−β⋅ϕ⋅R0)=α⋅ϕ\frac{1}{\exp (-\beta \cdot \phi \cdot R_0)} = \alpha \cdot \phi

-
β⋅ϕ⋅R0=log(α⋅ϕ)\beta \cdot \phi \cdot R_0 = \log(\alpha \cdot \phi)

-
β=log(α⋅ϕ)ϕ⋅R0\beta = \frac{\log(\alpha \cdot \phi)}{\phi \cdot R_0}

-
The number of recruits at the fished equilibrium
-(R0FR_{0F})
-can then be found for the Beverton-Holt curve as follows

-
R0F=α⋅ϕF⋅R0Fβ⋅ϕF⋅R0F+1R_{0F} = \frac{\alpha \cdot \phi_F \cdot R_{0F}}{\beta \cdot \phi_F \cdot R_{0F} + 1}

-
β⋅ϕF⋅R0F+1=α⋅ϕF\beta \cdot \phi_F \cdot R_{0F} + 1 = \alpha \cdot \phi_FR0F=α⋅ϕF−1β⋅ϕFR_{0F} = \frac{\alpha \cdot \phi_F - 1}{\beta \cdot \phi_F}

+
R_0 = \alpha \cdot \phi \cdot R_0 \cdot
+\exp (-\beta \cdot \phi \cdot R_0)

+
\frac{1}{\exp (-\beta \cdot \phi \cdot
+R_0)} = \alpha \cdot \phi

+
\beta \cdot \phi \cdot R_0 = \log(\alpha
+\cdot \phi)

+
\beta = \frac{\log(\alpha \cdot
+\phi)}{\phi \cdot R_0}

+
The number of recruits at the fished equilibrium (R_{0F}) can then be found for the
+Beverton-Holt curve as follows

+
R_{0F} = \frac{\alpha \cdot \phi_F \cdot
+R_{0F}}{\beta \cdot \phi_F \cdot R_{0F} + 1}

+
\beta \cdot \phi_F \cdot R_{0F} + 1 =
+\alpha \cdot \phi_F R_{0F} =
+\frac{\alpha \cdot \phi_F - 1}{\beta \cdot \phi_F}

 
and for the Ricker

-
R0F=α⋅ϕF⋅R0F⋅exp(−β⋅ϕF⋅R0F)R_{0F} = \alpha \cdot \phi_F \cdot R_{0F} \cdot \exp (-\beta \cdot \phi_F \cdot R_{0F})

-
1exp(−β⋅ϕF⋅R0F)=α⋅ϕF\frac{1}{\exp(-\beta \cdot \phi_F \cdot R_{0F})} = \alpha \cdot \phi_F

-
β⋅ϕF⋅R0F=log(α⋅ϕF)\beta \cdot \phi_F \cdot R_{0F} = \log(\alpha \cdot \phi_F)

-
R0F=log(α⋅ϕF)β⋅ϕFR_{0F} = \frac{\log(\alpha \cdot \phi_F)}{\beta \cdot \phi_F}

+
R_{0F} = \alpha \cdot \phi_F \cdot R_{0F}
+\cdot \exp (-\beta \cdot \phi_F \cdot R_{0F})

+
\frac{1}{\exp(-\beta \cdot \phi_F \cdot
+R_{0F})} = \alpha \cdot \phi_F

+
\beta \cdot \phi_F \cdot R_{0F} =
+\log(\alpha \cdot \phi_F)

+
R_{0F} = \frac{\log(\alpha \cdot
+\phi_F)}{\beta \cdot \phi_F}

 
Finally the estimates are rescaled so that the carrying capacity is
-identical to
-RmaxR_\text{max}
-through the following transformations

-
β=β⋅κ/Rmax    \beta = \beta \cdot \kappa / R_\text{max} R0=R0/κ⋅Rmax    R_0 = R_0 / \kappa \cdot R_\text{max} R0F=R0F/κ⋅Rmax    R_{0F} = R_{0F} / \kappa \cdot R_\text{max} 

-
where
-κ\kappa,
-which is the carrying capacity in the original scale, is
-α/β\alpha/\beta
-for the Beverton-Holt and
-α/(β⋅e)\alpha/(\beta \cdot e)
-for the Ricker curve.

+identical to R_\text{max} through the
+following transformations

+
    \beta = \beta \cdot \kappa /
+R_\text{max}      R_0 = R_0 / \kappa
+\cdot R_\text{max}      R_{0F} =
+R_{0F} / \kappa \cdot R_\text{max} 

+
where \kappa, which is the carrying
+capacity in the original scale, is \alpha/\beta for the Beverton-Holt and \alpha/(\beta \cdot e) for the Ricker
+curve.

Yield

When the yield is simply the number of fish caught (irrespective of the weight or whether or not its harvested) then it is given by

-

Y=∑a=RttmaxR0F⋅lxaF⋅π⋅VaY = \sum_{a = R_t}^{t_\text{max}} R_{0F} \cdot lx_a^F \cdot \pi \cdot V_a

+

Y = \sum_{a = R_t}^{t_\text{max}} R_{0F} +\cdot lx_a^F \cdot \pi \cdot V_a

if only harvested fish are considered it becomes

-

Y=∑a=RttmaxR0F⋅lxaF⋅π⋅Va⋅RY = \sum_{a = R_t}^{t_\text{max}} R_{0F} \cdot lx_a^F \cdot \pi \cdot V_a \cdot R

+

Y = \sum_{a = R_t}^{t_\text{max}} R_{0F} +\cdot lx_a^F \cdot \pi \cdot V_a \cdot R

and if the total weight (in kg) is important then its

-

Y=∑a=RttmaxR0F⋅lxaF⋅π⋅Va⋅R⋅Wa/1000Y = \sum_{a = R_t}^{t_\text{max}} R_{0F} \cdot lx_a^F \cdot \pi \cdot V_a \cdot R \cdot W_a/1000

+

Y = \sum_{a = R_t}^{t_\text{max}} R_{0F} +\cdot lx_a^F \cdot \pi \cdot V_a \cdot R \cdot W_a/1000

and if only trophy fish are to be considered then its

-

Y=∑a=Rttmaxif(La<Ly)0elseR0F⋅lxaF⋅π⋅Va⋅R⋅Wa/1000Y = \sum_{a = R_t}^{t_\text{max}} \text{if}(La < L_y)\ 0\ \text{else}\ R_{0F} \cdot lx_a^F \cdot \pi \cdot V_a \cdot R \cdot W_a/1000 -where -LyL_y -is the minimum length of a trophy fish.

+

Y = \sum_{a = R_t}^{t_\text{max}} +\text{if}(La < L_y)\ 0\ \text{else}\ R_{0F} \cdot lx_a^F \cdot \pi +\cdot V_a \cdot R \cdot W_a/1000 where L_y is the minimum length of a trophy +fish.

 ypr_plot_yield(population, harvest = TRUE, biomass = TRUE, Ly = 60)

@@ -573,14 +546,11 @@

Yield

Efficiency

The catchability q indicates the probability of capture -for a unit of effort -(EE). -It is assumed to be related to -π\pi -according to the relationship -π=1−exp(log(1−q)⋅E)\pi = 1 - \exp(\log(1-q)\cdot E) -which can be rearranged to give -E=log(1−π)log(1−q).E = \frac{\log(1-\pi)}{\log(1-q)}.

+for a unit of effort (E). It is assumed +to be related to \pi according to the +relationship \pi = 1 - \exp(\log(1-q)\cdot +E) which can be rearranged to give E = +\frac{\log(1-\pi)}{\log(1-q)}.

 ypr_plot_yield(population, y = "Effort", harvest = TRUE, biomass = TRUE, Ly = 60)

@@ -617,7 +587,7 @@

References -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/authors.html b/authors.html index 812ce51..c8ab955 100644 --- a/authors.html +++ b/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • ypr +Authors and Citation • ypr Skip to contents @@ -78,7 +78,7 @@

Citation

-

Site built with pkgdown 2.1.0.

+

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transparent;--bs-gradient: none}.btn-outline-light{--bs-btn-color: #f8f9fa;--bs-btn-border-color: #f8f9fa;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #f8f9fa;--bs-btn-hover-border-color: #f8f9fa;--bs-btn-focus-shadow-rgb: 248,249,250;--bs-btn-active-color: #000;--bs-btn-active-bg: #f8f9fa;--bs-btn-active-border-color: #f8f9fa;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #f8f9fa;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #f8f9fa;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-dark{--bs-btn-color: #212529;--bs-btn-border-color: #212529;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #212529;--bs-btn-hover-border-color: #212529;--bs-btn-focus-shadow-rgb: 33,37,41;--bs-btn-active-color: #fff;--bs-btn-active-bg: #212529;--bs-btn-active-border-color: #212529;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #212529;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: 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.5rem;--bs-btn-font-size:.875rem;--bs-btn-border-radius: var(--bs-border-radius-sm)}.fade{transition:opacity 0.15s linear}@media (prefers-reduced-motion: reduce){.fade{transition:none}}.fade:not(.show){opacity:0}.collapse:not(.show){display:none}.collapsing{height:0;overflow:hidden;transition:height 0.35s ease}@media (prefers-reduced-motion: reduce){.collapsing{transition:none}}.collapsing.collapse-horizontal{width:0;height:auto;transition:width 0.35s ease}@media (prefers-reduced-motion: reduce){.collapsing.collapse-horizontal{transition:none}}.dropup,.dropend,.dropdown,.dropstart,.dropup-center,.dropdown-center{position:relative}.dropdown-toggle{white-space:nowrap}.dropdown-toggle::after{display:inline-block;margin-left:.255em;vertical-align:.255em;content:"";border-top:.3em solid;border-right:.3em solid transparent;border-bottom:0;border-left:.3em solid transparent}.dropdown-toggle:empty::after{margin-left:0}.dropdown-menu{--bs-dropdown-zindex: 1000;--bs-dropdown-min-width: 10rem;--bs-dropdown-padding-x: 0;--bs-dropdown-padding-y: .5rem;--bs-dropdown-spacer: .125rem;--bs-dropdown-font-size:1rem;--bs-dropdown-color: var(--bs-body-color);--bs-dropdown-bg: var(--bs-body-bg);--bs-dropdown-border-color: var(--bs-border-color-translucent);--bs-dropdown-border-radius: var(--bs-border-radius);--bs-dropdown-border-width: var(--bs-border-width);--bs-dropdown-inner-border-radius: calc(var(--bs-border-radius) - var(--bs-border-width));--bs-dropdown-divider-bg: var(--bs-border-color-translucent);--bs-dropdown-divider-margin-y: .5rem;--bs-dropdown-box-shadow: 0 0.5rem 1rem rgba(0,0,0,0.15);--bs-dropdown-link-color: var(--bs-body-color);--bs-dropdown-link-hover-color: var(--bs-body-color);--bs-dropdown-link-hover-bg: var(--bs-tertiary-bg);--bs-dropdown-link-active-color: #fff;--bs-dropdown-link-active-bg: #255783;--bs-dropdown-link-disabled-color: var(--bs-tertiary-color);--bs-dropdown-item-padding-x: 1rem;--bs-dropdown-item-padding-y: .25rem;--bs-dropdown-header-color: #6c757d;--bs-dropdown-header-padding-x: 1rem;--bs-dropdown-header-padding-y: .5rem;position:absolute;z-index:var(--bs-dropdown-zindex);display:none;min-width:var(--bs-dropdown-min-width);padding:var(--bs-dropdown-padding-y) var(--bs-dropdown-padding-x);margin:0;font-size:var(--bs-dropdown-font-size);color:var(--bs-dropdown-color);text-align:left;list-style:none;background-color:var(--bs-dropdown-bg);background-clip:padding-box;border:var(--bs-dropdown-border-width) solid var(--bs-dropdown-border-color);border-radius:var(--bs-dropdown-border-radius)}.dropdown-menu[data-bs-popper]{top:100%;left:0;margin-top:var(--bs-dropdown-spacer)}.dropdown-menu-start{--bs-position: start}.dropdown-menu-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-end{--bs-position: end}.dropdown-menu-end[data-bs-popper]{right:0;left:auto}@media (min-width: 576px){.dropdown-menu-sm-start{--bs-position: start}.dropdown-menu-sm-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-sm-end{--bs-position: end}.dropdown-menu-sm-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 768px){.dropdown-menu-md-start{--bs-position: start}.dropdown-menu-md-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-md-end{--bs-position: end}.dropdown-menu-md-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 992px){.dropdown-menu-lg-start{--bs-position: start}.dropdown-menu-lg-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-lg-end{--bs-position: end}.dropdown-menu-lg-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 1200px){.dropdown-menu-xl-start{--bs-position: start}.dropdown-menu-xl-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-xl-end{--bs-position: end}.dropdown-menu-xl-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 1400px){.dropdown-menu-xxl-start{--bs-position: start}.dropdown-menu-xxl-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-xxl-end{--bs-position: end}.dropdown-menu-xxl-end[data-bs-popper]{right:0;left:auto}}.dropup .dropdown-menu[data-bs-popper]{top:auto;bottom:100%;margin-top:0;margin-bottom:var(--bs-dropdown-spacer)}.dropup .dropdown-toggle::after{display:inline-block;margin-left:.255em;vertical-align:.255em;content:"";border-top:0;border-right:.3em solid transparent;border-bottom:.3em solid;border-left:.3em solid transparent}.dropup .dropdown-toggle:empty::after{margin-left:0}.dropend .dropdown-menu[data-bs-popper]{top:0;right:auto;left:100%;margin-top:0;margin-left:var(--bs-dropdown-spacer)}.dropend .dropdown-toggle::after{display:inline-block;margin-left:.255em;vertical-align:.255em;content:"";border-top:.3em solid transparent;border-right:0;border-bottom:.3em solid transparent;border-left:.3em solid}.dropend .dropdown-toggle:empty::after{margin-left:0}.dropend .dropdown-toggle::after{vertical-align:0}.dropstart .dropdown-menu[data-bs-popper]{top:0;right:100%;left:auto;margin-top:0;margin-right:var(--bs-dropdown-spacer)}.dropstart .dropdown-toggle::after{display:inline-block;margin-left:.255em;vertical-align:.255em;content:""}.dropstart .dropdown-toggle::after{display:none}.dropstart .dropdown-toggle::before{display:inline-block;margin-right:.255em;vertical-align:.255em;content:"";border-top:.3em solid transparent;border-right:.3em solid;border-bottom:.3em solid transparent}.dropstart .dropdown-toggle:empty::after{margin-left:0}.dropstart .dropdown-toggle::before{vertical-align:0}.dropdown-divider{height:0;margin:var(--bs-dropdown-divider-margin-y) 0;overflow:hidden;border-top:1px solid var(--bs-dropdown-divider-bg);opacity:1}.dropdown-item{display:block;width:100%;padding:var(--bs-dropdown-item-padding-y) 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var(--bs-dropdown-header-padding-x);margin-bottom:0;font-size:.875rem;color:var(--bs-dropdown-header-color);white-space:nowrap}.dropdown-item-text{display:block;padding:var(--bs-dropdown-item-padding-y) var(--bs-dropdown-item-padding-x);color:var(--bs-dropdown-link-color)}.dropdown-menu-dark{--bs-dropdown-color: #dee2e6;--bs-dropdown-bg: #343a40;--bs-dropdown-border-color: var(--bs-border-color-translucent);--bs-dropdown-box-shadow: ;--bs-dropdown-link-color: #dee2e6;--bs-dropdown-link-hover-color: #fff;--bs-dropdown-divider-bg: var(--bs-border-color-translucent);--bs-dropdown-link-hover-bg: rgba(255,255,255,0.15);--bs-dropdown-link-active-color: #fff;--bs-dropdown-link-active-bg: #255783;--bs-dropdown-link-disabled-color: #adb5bd;--bs-dropdown-header-color: #adb5bd}.btn-group,.btn-group-vertical{position:relative;display:inline-flex;vertical-align:middle}.btn-group>.btn,.btn-group-vertical>.btn{position:relative;flex:1 1 auto;-webkit-flex:1 1 auto}.btn-group>.btn-check:checked+.btn,.btn-group>.btn-check:focus+.btn,.btn-group>.btn:hover,.btn-group>.btn:focus,.btn-group>.btn:active,.btn-group>.btn.active,.btn-group-vertical>.btn-check:checked+.btn,.btn-group-vertical>.btn-check:focus+.btn,.btn-group-vertical>.btn:hover,.btn-group-vertical>.btn:focus,.btn-group-vertical>.btn:active,.btn-group-vertical>.btn.active{z-index:1}.btn-toolbar{display:flex;display:-webkit-flex;flex-wrap:wrap;-webkit-flex-wrap:wrap;justify-content:flex-start;-webkit-justify-content:flex-start}.btn-toolbar .input-group{width:auto}.btn-group{border-radius:var(--bs-border-radius)}.btn-group>:not(.btn-check:first-child)+.btn,.btn-group>.btn-group:not(:first-child){margin-left:calc(var(--bs-border-width) * -1)}.btn-group>.btn:not(:last-child):not(.dropdown-toggle),.btn-group>.btn.dropdown-toggle-split:first-child,.btn-group>.btn-group:not(:last-child)>.btn{border-top-right-radius:0;border-bottom-right-radius:0}.btn-group>.btn:nth-child(n + 3),.btn-group>:not(.btn-check)+.btn,.btn-group>.btn-group:not(:first-child)>.btn{border-top-left-radius:0;border-bottom-left-radius:0}.dropdown-toggle-split{padding-right:.5625rem;padding-left:.5625rem}.dropdown-toggle-split::after,.dropup .dropdown-toggle-split::after,.dropend .dropdown-toggle-split::after{margin-left:0}.dropstart .dropdown-toggle-split::before{margin-right:0}.btn-sm+.dropdown-toggle-split,.btn-group-sm>.btn+.dropdown-toggle-split{padding-right:.375rem;padding-left:.375rem}.btn-lg+.dropdown-toggle-split,.btn-group-lg>.btn+.dropdown-toggle-split{padding-right:.75rem;padding-left:.75rem}.btn-group-vertical{flex-direction:column;-webkit-flex-direction:column;align-items:flex-start;-webkit-align-items:flex-start;justify-content:center;-webkit-justify-content:center}.btn-group-vertical>.btn,.btn-group-vertical>.btn-group{width:100%}.btn-group-vertical>.btn:not(:first-child),.btn-group-vertical>.btn-group:not(:first-child){margin-top:calc(var(--bs-border-width) * -1)}.btn-group-vertical>.btn:not(:last-child):not(.dropdown-toggle),.btn-group-vertical>.btn-group:not(:last-child)>.btn{border-bottom-right-radius:0;border-bottom-left-radius:0}.btn-group-vertical>.btn~.btn,.btn-group-vertical>.btn-group:not(:first-child)>.btn{border-top-left-radius:0;border-top-right-radius:0}.nav{--bs-nav-link-padding-x: 1rem;--bs-nav-link-padding-y: .5rem;--bs-nav-link-font-weight: ;--bs-nav-link-color: var(--bs-link-color);--bs-nav-link-hover-color: var(--bs-link-hover-color);--bs-nav-link-disabled-color: var(--bs-secondary-color);display:flex;display:-webkit-flex;flex-wrap:wrap;-webkit-flex-wrap:wrap;padding-left:0;margin-bottom:0;list-style:none}.nav-link{display:block;padding:var(--bs-nav-link-padding-y) 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var(--bs-border-color);--bs-nav-tabs-link-active-color: var(--bs-emphasis-color);--bs-nav-tabs-link-active-bg: var(--bs-body-bg);--bs-nav-tabs-link-active-border-color: var(--bs-border-color) var(--bs-border-color) var(--bs-body-bg);border-bottom:var(--bs-nav-tabs-border-width) solid var(--bs-nav-tabs-border-color)}.nav-tabs .nav-link{margin-bottom:calc(-1 * var(--bs-nav-tabs-border-width));border:var(--bs-nav-tabs-border-width) solid transparent;border-top-left-radius:var(--bs-nav-tabs-border-radius);border-top-right-radius:var(--bs-nav-tabs-border-radius)}.nav-tabs .nav-link:hover,.nav-tabs .nav-link:focus{isolation:isolate;border-color:var(--bs-nav-tabs-link-hover-border-color)}.nav-tabs .nav-link.active,.nav-tabs .nav-item.show .nav-link{color:var(--bs-nav-tabs-link-active-color);background-color:var(--bs-nav-tabs-link-active-bg);border-color:var(--bs-nav-tabs-link-active-border-color)}.nav-tabs .dropdown-menu{margin-top:calc(-1 * 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992px){.navbar-expand-lg{flex-wrap:nowrap;-webkit-flex-wrap:nowrap;justify-content:flex-start;-webkit-justify-content:flex-start}.navbar-expand-lg .navbar-nav{flex-direction:row;-webkit-flex-direction:row}.navbar-expand-lg .navbar-nav .dropdown-menu{position:absolute}.navbar-expand-lg .navbar-nav .nav-link{padding-right:var(--bs-navbar-nav-link-padding-x);padding-left:var(--bs-navbar-nav-link-padding-x)}.navbar-expand-lg .navbar-nav-scroll{overflow:visible}.navbar-expand-lg .navbar-collapse{display:flex !important;display:-webkit-flex !important;flex-basis:auto;-webkit-flex-basis:auto}.navbar-expand-lg .navbar-toggler{display:none}.navbar-expand-lg .offcanvas{position:static;z-index:auto;flex-grow:1;-webkit-flex-grow:1;width:auto !important;height:auto !important;visibility:visible !important;background-color:transparent !important;border:0 !important;transform:none !important;transition:none}.navbar-expand-lg .offcanvas .offcanvas-header{display:none}.navbar-expand-lg .offcanvas 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.offcanvas{position:static;z-index:auto;flex-grow:1;-webkit-flex-grow:1;width:auto !important;height:auto !important;visibility:visible !important;background-color:transparent !important;border:0 !important;transform:none !important;transition:none}.navbar-expand-xxl .offcanvas .offcanvas-header{display:none}.navbar-expand-xxl .offcanvas .offcanvas-body{display:flex;display:-webkit-flex;flex-grow:0;-webkit-flex-grow:0;padding:0;overflow-y:visible}}.navbar-expand{flex-wrap:nowrap;-webkit-flex-wrap:nowrap;justify-content:flex-start;-webkit-justify-content:flex-start}.navbar-expand .navbar-nav{flex-direction:row;-webkit-flex-direction:row}.navbar-expand .navbar-nav .dropdown-menu{position:absolute}.navbar-expand .navbar-nav .nav-link{padding-right:var(--bs-navbar-nav-link-padding-x);padding-left:var(--bs-navbar-nav-link-padding-x)}.navbar-expand .navbar-nav-scroll{overflow:visible}.navbar-expand .navbar-collapse{display:flex !important;display:-webkit-flex 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1);--bs-navbar-toggler-border-color: rgba(var(--bs-emphasis-color-rgb), 0.1);--bs-navbar-toggler-icon-bg: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 30 30'%3e%3cpath stroke='rgba%28255,255,255,0.75%29' stroke-linecap='round' stroke-miterlimit='10' stroke-width='2' d='M4 7h22M4 15h22M4 23h22'/%3e%3c/svg%3e")}[data-bs-theme="dark"] .navbar-toggler-icon{--bs-navbar-toggler-icon-bg: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 30 30'%3e%3cpath stroke='rgba%28255,255,255,0.75%29' stroke-linecap='round' stroke-miterlimit='10' stroke-width='2' d='M4 7h22M4 15h22M4 23h22'/%3e%3c/svg%3e")}.card{--bs-card-spacer-y: 1rem;--bs-card-spacer-x: 1rem;--bs-card-title-spacer-y: .5rem;--bs-card-title-color: ;--bs-card-subtitle-color: ;--bs-card-border-width: var(--bs-border-width);--bs-card-border-color: var(--bs-border-color-translucent);--bs-card-border-radius: var(--bs-border-radius);--bs-card-box-shadow: ;--bs-card-inner-border-radius: calc(var(--bs-border-radius) - (var(--bs-border-width)));--bs-card-cap-padding-y: .5rem;--bs-card-cap-padding-x: 1rem;--bs-card-cap-bg: rgba(var(--bs-body-color-rgb), 0.03);--bs-card-cap-color: ;--bs-card-height: ;--bs-card-color: ;--bs-card-bg: var(--bs-body-bg);--bs-card-img-overlay-padding: 1rem;--bs-card-group-margin: .75rem;position:relative;display:flex;display:-webkit-flex;flex-direction:column;-webkit-flex-direction:column;min-width:0;height:var(--bs-card-height);color:var(--bs-body-color);word-wrap:break-word;background-color:var(--bs-card-bg);background-clip:border-box;border:var(--bs-card-border-width) solid 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wrap;-webkit-flex-flow:row wrap}.card-group>.card{flex:1 0 0%;-webkit-flex:1 0 0%;margin-bottom:0}.card-group>.card+.card{margin-left:0;border-left:0}.card-group>.card:not(:last-child){border-top-right-radius:0;border-bottom-right-radius:0}.card-group>.card:not(:last-child) .card-img-top,.card-group>.card:not(:last-child) .card-header{border-top-right-radius:0}.card-group>.card:not(:last-child) .card-img-bottom,.card-group>.card:not(:last-child) .card-footer{border-bottom-right-radius:0}.card-group>.card:not(:first-child){border-top-left-radius:0;border-bottom-left-radius:0}.card-group>.card:not(:first-child) .card-img-top,.card-group>.card:not(:first-child) .card-header{border-top-left-radius:0}.card-group>.card:not(:first-child) .card-img-bottom,.card-group>.card:not(:first-child) .card-footer{border-bottom-left-radius:0}}.accordion{--bs-accordion-color: var(--bs-body-color);--bs-accordion-bg: var(--bs-body-bg);--bs-accordion-transition: color 0.15s ease-in-out,background-color 0.15s 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url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%230f2334'%3e%3cpath fill-rule='evenodd' d='M1.646 4.646a.5.5 0 0 1 .708 0L8 10.293l5.646-5.647a.5.5 0 0 1 .708.708l-6 6a.5.5 0 0 1-.708 0l-6-6a.5.5 0 0 1 0-.708z'/%3e%3c/svg%3e");--bs-accordion-btn-focus-border-color: #92abc1;--bs-accordion-btn-focus-box-shadow: 0 0 0 .25rem rgba(37,87,131,0.25);--bs-accordion-body-padding-x: 1.25rem;--bs-accordion-body-padding-y: 1rem;--bs-accordion-active-color: var(--bs-primary-text-emphasis);--bs-accordion-active-bg: var(--bs-primary-bg-subtle)}.accordion-button{position:relative;display:flex;display:-webkit-flex;align-items:center;-webkit-align-items:center;width:100%;padding:var(--bs-accordion-btn-padding-y) var(--bs-accordion-btn-padding-x);font-size:1rem;color:var(--bs-accordion-btn-color);text-align:left;background-color:var(--bs-accordion-btn-bg);border:0;border-radius:0;overflow-anchor:none;transition:var(--bs-accordion-transition)}@media (prefers-reduced-motion: reduce){.accordion-button{transition:none}}.accordion-button:not(.collapsed){color:var(--bs-accordion-active-color);background-color:var(--bs-accordion-active-bg);box-shadow:inset 0 calc(-1 * var(--bs-accordion-border-width)) 0 var(--bs-accordion-border-color)}.accordion-button:not(.collapsed)::after{background-image:var(--bs-accordion-btn-active-icon);transform:var(--bs-accordion-btn-icon-transform)}.accordion-button::after{flex-shrink:0;-webkit-flex-shrink:0;width:var(--bs-accordion-btn-icon-width);height:var(--bs-accordion-btn-icon-width);margin-left:auto;content:"";background-image:var(--bs-accordion-btn-icon);background-repeat:no-repeat;background-size:var(--bs-accordion-btn-icon-width);transition:var(--bs-accordion-btn-icon-transition)}@media (prefers-reduced-motion: reduce){.accordion-button::after{transition:none}}.accordion-button:hover{z-index:2}.accordion-button:focus{z-index:3;border-color:var(--bs-accordion-btn-focus-border-color);outline:0;box-shadow:var(--bs-accordion-btn-focus-box-shadow)}.accordion-header{margin-bottom:0}.accordion-item{color:var(--bs-accordion-color);background-color:var(--bs-accordion-bg);border:var(--bs-accordion-border-width) solid var(--bs-accordion-border-color)}.accordion-item:first-of-type{border-top-left-radius:var(--bs-accordion-border-radius);border-top-right-radius:var(--bs-accordion-border-radius)}.accordion-item:first-of-type .accordion-button{border-top-left-radius:var(--bs-accordion-inner-border-radius);border-top-right-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:not(:first-of-type){border-top:0}.accordion-item:last-of-type{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-item:last-of-type .accordion-button.collapsed{border-bottom-right-radius:var(--bs-accordion-inner-border-radius);border-bottom-left-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:last-of-type .accordion-collapse{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-body{padding:var(--bs-accordion-body-padding-y) var(--bs-accordion-body-padding-x)}.accordion-flush .accordion-collapse{border-width:0}.accordion-flush .accordion-item{border-right:0;border-left:0;border-radius:0}.accordion-flush .accordion-item:first-child{border-top:0}.accordion-flush .accordion-item:last-child{border-bottom:0}.accordion-flush .accordion-item .accordion-button,.accordion-flush .accordion-item .accordion-button.collapsed{border-radius:0}[data-bs-theme="dark"] .accordion-button::after{--bs-accordion-btn-icon: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%237c9ab5'%3e%3cpath fill-rule='evenodd' d='M1.646 4.646a.5.5 0 0 1 .708 0L8 10.293l5.646-5.647a.5.5 0 0 1 .708.708l-6 6a.5.5 0 0 1-.708 0l-6-6a.5.5 0 0 1 0-.708z'/%3e%3c/svg%3e");--bs-accordion-btn-active-icon: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%237c9ab5'%3e%3cpath fill-rule='evenodd' d='M1.646 4.646a.5.5 0 0 1 .708 0L8 10.293l5.646-5.647a.5.5 0 0 1 .708.708l-6 6a.5.5 0 0 1-.708 0l-6-6a.5.5 0 0 1 0-.708z'/%3e%3c/svg%3e")}.breadcrumb{--bs-breadcrumb-padding-x: 0;--bs-breadcrumb-padding-y: 0;--bs-breadcrumb-margin-bottom: 1rem;--bs-breadcrumb-bg: ;--bs-breadcrumb-border-radius: ;--bs-breadcrumb-divider-color: var(--bs-secondary-color);--bs-breadcrumb-item-padding-x: .5rem;--bs-breadcrumb-item-active-color: var(--bs-secondary-color);display:flex;display:-webkit-flex;flex-wrap:wrap;-webkit-flex-wrap:wrap;padding:var(--bs-breadcrumb-padding-y) var(--bs-breadcrumb-padding-x);margin-bottom:var(--bs-breadcrumb-margin-bottom);font-size:var(--bs-breadcrumb-font-size);list-style:none;background-color:var(--bs-breadcrumb-bg);border-radius:var(--bs-breadcrumb-border-radius)}.breadcrumb-item+.breadcrumb-item{padding-left:var(--bs-breadcrumb-item-padding-x)}.breadcrumb-item+.breadcrumb-item::before{float:left;padding-right:var(--bs-breadcrumb-item-padding-x);color:var(--bs-breadcrumb-divider-color);content:var(--bs-breadcrumb-divider, "/") /* rtl: var(--bs-breadcrumb-divider, "/") */}.breadcrumb-item.active{color:var(--bs-breadcrumb-item-active-color)}.pagination{--bs-pagination-padding-x: .75rem;--bs-pagination-padding-y: .375rem;--bs-pagination-font-size:1rem;--bs-pagination-color: var(--bs-link-color);--bs-pagination-bg: var(--bs-body-bg);--bs-pagination-border-width: var(--bs-border-width);--bs-pagination-border-color: var(--bs-border-color);--bs-pagination-border-radius: var(--bs-border-radius);--bs-pagination-hover-color: var(--bs-link-hover-color);--bs-pagination-hover-bg: var(--bs-tertiary-bg);--bs-pagination-hover-border-color: var(--bs-border-color);--bs-pagination-focus-color: var(--bs-link-hover-color);--bs-pagination-focus-bg: var(--bs-secondary-bg);--bs-pagination-focus-box-shadow: 0 0 0 .25rem rgba(37,87,131,0.25);--bs-pagination-active-color: #fff;--bs-pagination-active-bg: #255783;--bs-pagination-active-border-color: #255783;--bs-pagination-disabled-color: var(--bs-secondary-color);--bs-pagination-disabled-bg: var(--bs-secondary-bg);--bs-pagination-disabled-border-color: var(--bs-border-color);display:flex;display:-webkit-flex;padding-left:0;list-style:none}.page-link{position:relative;display:block;padding:var(--bs-pagination-padding-y) var(--bs-pagination-padding-x);font-size:var(--bs-pagination-font-size);color:var(--bs-pagination-color);text-decoration:none;-webkit-text-decoration:none;-moz-text-decoration:none;-ms-text-decoration:none;-o-text-decoration:none;background-color:var(--bs-pagination-bg);border:var(--bs-pagination-border-width) solid var(--bs-pagination-border-color);transition:color 0.15s ease-in-out,background-color 0.15s ease-in-out,border-color 0.15s ease-in-out,box-shadow 0.15s ease-in-out}@media (prefers-reduced-motion: reduce){.page-link{transition:none}}.page-link:hover{z-index:2;color:var(--bs-pagination-hover-color);background-color:var(--bs-pagination-hover-bg);border-color:var(--bs-pagination-hover-border-color)}.page-link:focus{z-index:3;color:var(--bs-pagination-focus-color);background-color:var(--bs-pagination-focus-bg);outline:0;box-shadow:var(--bs-pagination-focus-box-shadow)}.page-link.active,.active>.page-link{z-index:3;color:var(--bs-pagination-active-color);background-color:var(--bs-pagination-active-bg);border-color:var(--bs-pagination-active-border-color)}.page-link.disabled,.disabled>.page-link{color:var(--bs-pagination-disabled-color);pointer-events:none;background-color:var(--bs-pagination-disabled-bg);border-color:var(--bs-pagination-disabled-border-color)}.page-item:not(:first-child) .page-link{margin-left:calc(var(--bs-border-width) * -1)}.page-item:first-child .page-link{border-top-left-radius:var(--bs-pagination-border-radius);border-bottom-left-radius:var(--bs-pagination-border-radius)}.page-item:last-child .page-link{border-top-right-radius:var(--bs-pagination-border-radius);border-bottom-right-radius:var(--bs-pagination-border-radius)}.pagination-lg{--bs-pagination-padding-x: 1.5rem;--bs-pagination-padding-y: .75rem;--bs-pagination-font-size:1.25rem;--bs-pagination-border-radius: var(--bs-border-radius-lg)}.pagination-sm{--bs-pagination-padding-x: .5rem;--bs-pagination-padding-y: .25rem;--bs-pagination-font-size:.875rem;--bs-pagination-border-radius: var(--bs-border-radius-sm)}.badge{--bs-badge-padding-x: .65em;--bs-badge-padding-y: .35em;--bs-badge-font-size:.75em;--bs-badge-font-weight: 700;--bs-badge-color: #fff;--bs-badge-border-radius: var(--bs-border-radius);display:inline-block;padding:var(--bs-badge-padding-y) var(--bs-badge-padding-x);font-size:var(--bs-badge-font-size);font-weight:var(--bs-badge-font-weight);line-height:1;color:var(--bs-badge-color);text-align:center;white-space:nowrap;vertical-align:baseline;border-radius:var(--bs-badge-border-radius)}.badge:empty{display:none}.btn .badge{position:relative;top:-1px}.alert{--bs-alert-bg: transparent;--bs-alert-padding-x: 1rem;--bs-alert-padding-y: 1rem;--bs-alert-margin-bottom: 1rem;--bs-alert-color: inherit;--bs-alert-border-color: transparent;--bs-alert-border: var(--bs-border-width) solid var(--bs-alert-border-color);--bs-alert-border-radius: var(--bs-border-radius);--bs-alert-link-color: inherit;position:relative;padding:var(--bs-alert-padding-y) var(--bs-alert-padding-x);margin-bottom:var(--bs-alert-margin-bottom);color:var(--bs-alert-color);background-color:var(--bs-alert-bg);border:var(--bs-alert-border);border-radius:var(--bs-alert-border-radius)}.alert-heading{color:inherit}.alert-link{font-weight:700;color:var(--bs-alert-link-color)}.alert-dismissible{padding-right:3rem}.alert-dismissible .btn-close{position:absolute;top:0;right:0;z-index:2;padding:1.25rem 1rem}.alert-default{--bs-alert-color: var(--bs-default-text-emphasis);--bs-alert-bg: var(--bs-default-bg-subtle);--bs-alert-border-color: var(--bs-default-border-subtle);--bs-alert-link-color: var(--bs-default-text-emphasis)}.alert-primary{--bs-alert-color: var(--bs-primary-text-emphasis);--bs-alert-bg: var(--bs-primary-bg-subtle);--bs-alert-border-color: var(--bs-primary-border-subtle);--bs-alert-link-color: var(--bs-primary-text-emphasis)}.alert-secondary{--bs-alert-color: var(--bs-secondary-text-emphasis);--bs-alert-bg: var(--bs-secondary-bg-subtle);--bs-alert-border-color: var(--bs-secondary-border-subtle);--bs-alert-link-color: var(--bs-secondary-text-emphasis)}.alert-success{--bs-alert-color: var(--bs-success-text-emphasis);--bs-alert-bg: var(--bs-success-bg-subtle);--bs-alert-border-color: var(--bs-success-border-subtle);--bs-alert-link-color: var(--bs-success-text-emphasis)}.alert-info{--bs-alert-color: var(--bs-info-text-emphasis);--bs-alert-bg: var(--bs-info-bg-subtle);--bs-alert-border-color: var(--bs-info-border-subtle);--bs-alert-link-color: var(--bs-info-text-emphasis)}.alert-warning{--bs-alert-color: var(--bs-warning-text-emphasis);--bs-alert-bg: var(--bs-warning-bg-subtle);--bs-alert-border-color: var(--bs-warning-border-subtle);--bs-alert-link-color: var(--bs-warning-text-emphasis)}.alert-danger{--bs-alert-color: var(--bs-danger-text-emphasis);--bs-alert-bg: var(--bs-danger-bg-subtle);--bs-alert-border-color: var(--bs-danger-border-subtle);--bs-alert-link-color: var(--bs-danger-text-emphasis)}.alert-light{--bs-alert-color: var(--bs-light-text-emphasis);--bs-alert-bg: var(--bs-light-bg-subtle);--bs-alert-border-color: var(--bs-light-border-subtle);--bs-alert-link-color: var(--bs-light-text-emphasis)}.alert-dark{--bs-alert-color: var(--bs-dark-text-emphasis);--bs-alert-bg: var(--bs-dark-bg-subtle);--bs-alert-border-color: var(--bs-dark-border-subtle);--bs-alert-link-color: var(--bs-dark-text-emphasis)}@keyframes progress-bar-stripes{0%{background-position-x:1rem}}.progress,.progress-stacked{--bs-progress-height: 1rem;--bs-progress-font-size:.75rem;--bs-progress-bg: var(--bs-secondary-bg);--bs-progress-border-radius: var(--bs-border-radius);--bs-progress-box-shadow: var(--bs-box-shadow-inset);--bs-progress-bar-color: #fff;--bs-progress-bar-bg: #255783;--bs-progress-bar-transition: width 0.6s ease;display:flex;display:-webkit-flex;height:var(--bs-progress-height);overflow:hidden;font-size:var(--bs-progress-font-size);background-color:var(--bs-progress-bg);border-radius:var(--bs-progress-border-radius)}.progress-bar{display:flex;display:-webkit-flex;flex-direction:column;-webkit-flex-direction:column;justify-content:center;-webkit-justify-content:center;overflow:hidden;color:var(--bs-progress-bar-color);text-align:center;white-space:nowrap;background-color:var(--bs-progress-bar-bg);transition:var(--bs-progress-bar-transition)}@media (prefers-reduced-motion: reduce){.progress-bar{transition:none}}.progress-bar-striped{background-image:linear-gradient(45deg, rgba(255,255,255,0.15) 25%, transparent 25%, transparent 50%, rgba(255,255,255,0.15) 50%, rgba(255,255,255,0.15) 75%, transparent 75%, transparent);background-size:var(--bs-progress-height) var(--bs-progress-height)}.progress-stacked>.progress{overflow:visible}.progress-stacked>.progress>.progress-bar{width:100%}.progress-bar-animated{animation:1s linear infinite progress-bar-stripes}@media (prefers-reduced-motion: reduce){.progress-bar-animated{animation:none}}.list-group{--bs-list-group-color: var(--bs-body-color);--bs-list-group-bg: var(--bs-body-bg);--bs-list-group-border-color: var(--bs-border-color);--bs-list-group-border-width: var(--bs-border-width);--bs-list-group-border-radius: var(--bs-border-radius);--bs-list-group-item-padding-x: 1rem;--bs-list-group-item-padding-y: .5rem;--bs-list-group-action-color: var(--bs-secondary-color);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-tertiary-bg);--bs-list-group-action-active-color: var(--bs-body-color);--bs-list-group-action-active-bg: var(--bs-secondary-bg);--bs-list-group-disabled-color: var(--bs-secondary-color);--bs-list-group-disabled-bg: 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reduce){.btn{transition:none}}.btn:hover{color:var(--bs-btn-hover-color);background-color:var(--bs-btn-hover-bg);border-color:var(--bs-btn-hover-border-color)}.btn-check+.btn:hover{color:var(--bs-btn-color);background-color:var(--bs-btn-bg);border-color:var(--bs-btn-border-color)}.btn:focus-visible{color:var(--bs-btn-hover-color);background-color:var(--bs-btn-hover-bg);border-color:var(--bs-btn-hover-border-color);outline:0;box-shadow:var(--bs-btn-focus-box-shadow)}.btn-check:focus-visible+.btn{border-color:var(--bs-btn-hover-border-color);outline:0;box-shadow:var(--bs-btn-focus-box-shadow)}.btn-check:checked+.btn,:not(.btn-check)+.btn:active,.btn:first-child:active,.btn.active,.btn.show{color:var(--bs-btn-active-color);background-color:var(--bs-btn-active-bg);border-color:var(--bs-btn-active-border-color)}.btn-check:checked+.btn:focus-visible,:not(.btn-check)+.btn:active:focus-visible,.btn:first-child:active:focus-visible,.btn.active:focus-visible,.btn.show:focus-visible{box-shadow:var(--bs-btn-focus-box-shadow)}.btn:disabled,.btn.disabled,fieldset:disabled 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#fff;--bs-btn-disabled-bg: #198754;--bs-btn-disabled-border-color: #198754}.btn-info{--bs-btn-color: #000;--bs-btn-bg: #0dcaf0;--bs-btn-border-color: #0dcaf0;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #31d2f2;--bs-btn-hover-border-color: #25cff2;--bs-btn-focus-shadow-rgb: 11,172,204;--bs-btn-active-color: #000;--bs-btn-active-bg: #3dd5f3;--bs-btn-active-border-color: #25cff2;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #000;--bs-btn-disabled-bg: #0dcaf0;--bs-btn-disabled-border-color: #0dcaf0}.btn-warning{--bs-btn-color: #000;--bs-btn-bg: #ffc107;--bs-btn-border-color: #ffc107;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #ffca2c;--bs-btn-hover-border-color: #ffc720;--bs-btn-focus-shadow-rgb: 217,164,6;--bs-btn-active-color: #000;--bs-btn-active-bg: #ffcd39;--bs-btn-active-border-color: #ffc720;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #000;--bs-btn-disabled-bg: #ffc107;--bs-btn-disabled-border-color: 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#212529;--bs-btn-border-color: #212529;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #424649;--bs-btn-hover-border-color: #373b3e;--bs-btn-focus-shadow-rgb: 66,70,73;--bs-btn-active-color: #fff;--bs-btn-active-bg: #4d5154;--bs-btn-active-border-color: #373b3e;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #fff;--bs-btn-disabled-bg: #212529;--bs-btn-disabled-border-color: #212529}.btn-outline-default{--bs-btn-color: #dee2e6;--bs-btn-border-color: #dee2e6;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #dee2e6;--bs-btn-hover-border-color: #dee2e6;--bs-btn-focus-shadow-rgb: 222,226,230;--bs-btn-active-color: #000;--bs-btn-active-bg: #dee2e6;--bs-btn-active-border-color: #dee2e6;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #dee2e6;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #dee2e6;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-primary{--bs-btn-color: #255783;--bs-btn-border-color: #255783;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #255783;--bs-btn-hover-border-color: #255783;--bs-btn-focus-shadow-rgb: 37,87,131;--bs-btn-active-color: #fff;--bs-btn-active-bg: #255783;--bs-btn-active-border-color: #255783;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #255783;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #255783;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-secondary{--bs-btn-color: #6c757d;--bs-btn-border-color: #6c757d;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #6c757d;--bs-btn-hover-border-color: #6c757d;--bs-btn-focus-shadow-rgb: 108,117,125;--bs-btn-active-color: #fff;--bs-btn-active-bg: #6c757d;--bs-btn-active-border-color: #6c757d;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #6c757d;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #6c757d;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-success{--bs-btn-color: #198754;--bs-btn-border-color: #198754;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #198754;--bs-btn-hover-border-color: #198754;--bs-btn-focus-shadow-rgb: 25,135,84;--bs-btn-active-color: #fff;--bs-btn-active-bg: #198754;--bs-btn-active-border-color: #198754;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #198754;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #198754;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-info{--bs-btn-color: #0dcaf0;--bs-btn-border-color: #0dcaf0;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #0dcaf0;--bs-btn-hover-border-color: #0dcaf0;--bs-btn-focus-shadow-rgb: 13,202,240;--bs-btn-active-color: #000;--bs-btn-active-bg: #0dcaf0;--bs-btn-active-border-color: #0dcaf0;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #0dcaf0;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #0dcaf0;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-warning{--bs-btn-color: #ffc107;--bs-btn-border-color: #ffc107;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #ffc107;--bs-btn-hover-border-color: #ffc107;--bs-btn-focus-shadow-rgb: 255,193,7;--bs-btn-active-color: #000;--bs-btn-active-bg: #ffc107;--bs-btn-active-border-color: #ffc107;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #ffc107;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #ffc107;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-danger{--bs-btn-color: #dc3545;--bs-btn-border-color: #dc3545;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #dc3545;--bs-btn-hover-border-color: #dc3545;--bs-btn-focus-shadow-rgb: 220,53,69;--bs-btn-active-color: #fff;--bs-btn-active-bg: #dc3545;--bs-btn-active-border-color: #dc3545;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #dc3545;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #dc3545;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-light{--bs-btn-color: #f8f9fa;--bs-btn-border-color: #f8f9fa;--bs-btn-hover-color: #000;--bs-btn-hover-bg: #f8f9fa;--bs-btn-hover-border-color: #f8f9fa;--bs-btn-focus-shadow-rgb: 248,249,250;--bs-btn-active-color: #000;--bs-btn-active-bg: #f8f9fa;--bs-btn-active-border-color: #f8f9fa;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #f8f9fa;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #f8f9fa;--bs-btn-bg: transparent;--bs-gradient: none}.btn-outline-dark{--bs-btn-color: #212529;--bs-btn-border-color: #212529;--bs-btn-hover-color: #fff;--bs-btn-hover-bg: #212529;--bs-btn-hover-border-color: #212529;--bs-btn-focus-shadow-rgb: 33,37,41;--bs-btn-active-color: #fff;--bs-btn-active-bg: #212529;--bs-btn-active-border-color: #212529;--bs-btn-active-shadow: inset 0 3px 5px rgba(0,0,0,0.125);--bs-btn-disabled-color: #212529;--bs-btn-disabled-bg: transparent;--bs-btn-disabled-border-color: #212529;--bs-btn-bg: transparent;--bs-gradient: none}.btn-link{--bs-btn-font-weight: 400;--bs-btn-color: var(--bs-link-color);--bs-btn-bg: transparent;--bs-btn-border-color: transparent;--bs-btn-hover-color: var(--bs-link-hover-color);--bs-btn-hover-border-color: transparent;--bs-btn-active-color: var(--bs-link-hover-color);--bs-btn-active-border-color: transparent;--bs-btn-disabled-color: #6c757d;--bs-btn-disabled-border-color: transparent;--bs-btn-box-shadow: 0 0 0 #000;--bs-btn-focus-shadow-rgb: 70,112,150;text-decoration:underline;-webkit-text-decoration:underline;-moz-text-decoration:underline;-ms-text-decoration:underline;-o-text-decoration:underline}.btn-link:focus-visible{color:var(--bs-btn-color)}.btn-link:hover{color:var(--bs-btn-hover-color)}.btn-lg,.btn-group-lg>.btn{--bs-btn-padding-y: .5rem;--bs-btn-padding-x: 1rem;--bs-btn-font-size:1.25rem;--bs-btn-border-radius: var(--bs-border-radius-lg)}.btn-sm,.btn-group-sm>.btn{--bs-btn-padding-y: .25rem;--bs-btn-padding-x: .5rem;--bs-btn-font-size:.875rem;--bs-btn-border-radius: var(--bs-border-radius-sm)}.fade{transition:opacity 0.15s linear}@media (prefers-reduced-motion: reduce){.fade{transition:none}}.fade:not(.show){opacity:0}.collapse:not(.show){display:none}.collapsing{height:0;overflow:hidden;transition:height 0.35s ease}@media (prefers-reduced-motion: reduce){.collapsing{transition:none}}.collapsing.collapse-horizontal{width:0;height:auto;transition:width 0.35s ease}@media (prefers-reduced-motion: reduce){.collapsing.collapse-horizontal{transition:none}}.dropup,.dropend,.dropdown,.dropstart,.dropup-center,.dropdown-center{position:relative}.dropdown-toggle{white-space:nowrap}.dropdown-toggle::after{display:inline-block;margin-left:.255em;vertical-align:.255em;content:"";border-top:.3em solid;border-right:.3em solid transparent;border-bottom:0;border-left:.3em solid transparent}.dropdown-toggle:empty::after{margin-left:0}.dropdown-menu{--bs-dropdown-zindex: 1000;--bs-dropdown-min-width: 10rem;--bs-dropdown-padding-x: 0;--bs-dropdown-padding-y: .5rem;--bs-dropdown-spacer: .125rem;--bs-dropdown-font-size:1rem;--bs-dropdown-color: var(--bs-body-color);--bs-dropdown-bg: var(--bs-body-bg);--bs-dropdown-border-color: var(--bs-border-color-translucent);--bs-dropdown-border-radius: var(--bs-border-radius);--bs-dropdown-border-width: var(--bs-border-width);--bs-dropdown-inner-border-radius: calc(var(--bs-border-radius) - var(--bs-border-width));--bs-dropdown-divider-bg: var(--bs-border-color-translucent);--bs-dropdown-divider-margin-y: .5rem;--bs-dropdown-box-shadow: 0 0.5rem 1rem rgba(0,0,0,0.15);--bs-dropdown-link-color: var(--bs-body-color);--bs-dropdown-link-hover-color: var(--bs-body-color);--bs-dropdown-link-hover-bg: var(--bs-tertiary-bg);--bs-dropdown-link-active-color: #fff;--bs-dropdown-link-active-bg: #255783;--bs-dropdown-link-disabled-color: var(--bs-tertiary-color);--bs-dropdown-item-padding-x: 1rem;--bs-dropdown-item-padding-y: .25rem;--bs-dropdown-header-color: #6c757d;--bs-dropdown-header-padding-x: 1rem;--bs-dropdown-header-padding-y: .5rem;position:absolute;z-index:var(--bs-dropdown-zindex);display:none;min-width:var(--bs-dropdown-min-width);padding:var(--bs-dropdown-padding-y) var(--bs-dropdown-padding-x);margin:0;font-size:var(--bs-dropdown-font-size);color:var(--bs-dropdown-color);text-align:left;list-style:none;background-color:var(--bs-dropdown-bg);background-clip:padding-box;border:var(--bs-dropdown-border-width) solid var(--bs-dropdown-border-color);border-radius:var(--bs-dropdown-border-radius)}.dropdown-menu[data-bs-popper]{top:100%;left:0;margin-top:var(--bs-dropdown-spacer)}.dropdown-menu-start{--bs-position: start}.dropdown-menu-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-end{--bs-position: end}.dropdown-menu-end[data-bs-popper]{right:0;left:auto}@media (min-width: 576px){.dropdown-menu-sm-start{--bs-position: start}.dropdown-menu-sm-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-sm-end{--bs-position: end}.dropdown-menu-sm-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 768px){.dropdown-menu-md-start{--bs-position: start}.dropdown-menu-md-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-md-end{--bs-position: end}.dropdown-menu-md-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 992px){.dropdown-menu-lg-start{--bs-position: start}.dropdown-menu-lg-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-lg-end{--bs-position: end}.dropdown-menu-lg-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 1200px){.dropdown-menu-xl-start{--bs-position: start}.dropdown-menu-xl-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-xl-end{--bs-position: end}.dropdown-menu-xl-end[data-bs-popper]{right:0;left:auto}}@media (min-width: 1400px){.dropdown-menu-xxl-start{--bs-position: start}.dropdown-menu-xxl-start[data-bs-popper]{right:auto;left:0}.dropdown-menu-xxl-end{--bs-position: end}.dropdown-menu-xxl-end[data-bs-popper]{right:0;left:auto}}.dropup 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var(--bs-dropdown-header-padding-x);margin-bottom:0;font-size:.875rem;color:var(--bs-dropdown-header-color);white-space:nowrap}.dropdown-item-text{display:block;padding:var(--bs-dropdown-item-padding-y) var(--bs-dropdown-item-padding-x);color:var(--bs-dropdown-link-color)}.dropdown-menu-dark{--bs-dropdown-color: #dee2e6;--bs-dropdown-bg: #343a40;--bs-dropdown-border-color: var(--bs-border-color-translucent);--bs-dropdown-box-shadow: ;--bs-dropdown-link-color: #dee2e6;--bs-dropdown-link-hover-color: #fff;--bs-dropdown-divider-bg: var(--bs-border-color-translucent);--bs-dropdown-link-hover-bg: rgba(255,255,255,0.15);--bs-dropdown-link-active-color: #fff;--bs-dropdown-link-active-bg: #255783;--bs-dropdown-link-disabled-color: #adb5bd;--bs-dropdown-header-color: #adb5bd}.btn-group,.btn-group-vertical{position:relative;display:inline-flex;vertical-align:middle}.btn-group>.btn,.btn-group-vertical>.btn{position:relative;flex:1 1 auto;-webkit-flex:1 1 auto}.btn-group>.btn-check:checked+.btn,.btn-group>.btn-check:focus+.btn,.btn-group>.btn:hover,.btn-group>.btn:focus,.btn-group>.btn:active,.btn-group>.btn.active,.btn-group-vertical>.btn-check:checked+.btn,.btn-group-vertical>.btn-check:focus+.btn,.btn-group-vertical>.btn:hover,.btn-group-vertical>.btn:focus,.btn-group-vertical>.btn:active,.btn-group-vertical>.btn.active{z-index:1}.btn-toolbar{display:flex;display:-webkit-flex;flex-wrap:wrap;-webkit-flex-wrap:wrap;justify-content:flex-start;-webkit-justify-content:flex-start}.btn-toolbar .input-group{width:auto}.btn-group{border-radius:var(--bs-border-radius)}.btn-group>:not(.btn-check:first-child)+.btn,.btn-group>.btn-group:not(:first-child){margin-left:calc(var(--bs-border-width) * -1)}.btn-group>.btn:not(:last-child):not(.dropdown-toggle),.btn-group>.btn.dropdown-toggle-split:first-child,.btn-group>.btn-group:not(:last-child)>.btn{border-top-right-radius:0;border-bottom-right-radius:0}.btn-group>.btn:nth-child(n + 3),.btn-group>:not(.btn-check)+.btn,.btn-group>.btn-group:not(:first-child)>.btn{border-top-left-radius:0;border-bottom-left-radius:0}.dropdown-toggle-split{padding-right:.5625rem;padding-left:.5625rem}.dropdown-toggle-split::after,.dropup .dropdown-toggle-split::after,.dropend .dropdown-toggle-split::after{margin-left:0}.dropstart .dropdown-toggle-split::before{margin-right:0}.btn-sm+.dropdown-toggle-split,.btn-group-sm>.btn+.dropdown-toggle-split{padding-right:.375rem;padding-left:.375rem}.btn-lg+.dropdown-toggle-split,.btn-group-lg>.btn+.dropdown-toggle-split{padding-right:.75rem;padding-left:.75rem}.btn-group-vertical{flex-direction:column;-webkit-flex-direction:column;align-items:flex-start;-webkit-align-items:flex-start;justify-content:center;-webkit-justify-content:center}.btn-group-vertical>.btn,.btn-group-vertical>.btn-group{width:100%}.btn-group-vertical>.btn:not(:first-child),.btn-group-vertical>.btn-group:not(:first-child){margin-top:calc(var(--bs-border-width) * -1)}.btn-group-vertical>.btn:not(:last-child):not(.dropdown-toggle),.btn-group-vertical>.btn-group:not(:last-child)>.btn{border-bottom-right-radius:0;border-bottom-left-radius:0}.btn-group-vertical>.btn~.btn,.btn-group-vertical>.btn-group:not(:first-child)>.btn{border-top-left-radius:0;border-top-right-radius:0}.nav{--bs-nav-link-padding-x: 1rem;--bs-nav-link-padding-y: .5rem;--bs-nav-link-font-weight: ;--bs-nav-link-color: var(--bs-link-color);--bs-nav-link-hover-color: var(--bs-link-hover-color);--bs-nav-link-disabled-color: var(--bs-secondary-color);display:flex;display:-webkit-flex;flex-wrap:wrap;-webkit-flex-wrap:wrap;padding-left:0;margin-bottom:0;list-style:none}.nav-link{display:block;padding:var(--bs-nav-link-padding-y) var(--bs-nav-link-padding-x);font-size:var(--bs-nav-link-font-size);font-weight:var(--bs-nav-link-font-weight);color:var(--bs-nav-link-color);text-decoration:none;-webkit-text-decoration:none;-moz-text-decoration:none;-ms-text-decoration:none;-o-text-decoration:none;background:none;border:0;transition:color 0.15s ease-in-out,background-color 0.15s ease-in-out,border-color 0.15s ease-in-out}@media (prefers-reduced-motion: reduce){.nav-link{transition:none}}.nav-link:hover,.nav-link:focus{color:var(--bs-nav-link-hover-color)}.nav-link:focus-visible{outline:0;box-shadow:0 0 0 .25rem rgba(37,87,131,0.25)}.nav-link.disabled,.nav-link:disabled{color:var(--bs-nav-link-disabled-color);pointer-events:none;cursor:default}.nav-tabs{--bs-nav-tabs-border-width: var(--bs-border-width);--bs-nav-tabs-border-color: var(--bs-border-color);--bs-nav-tabs-border-radius: var(--bs-border-radius);--bs-nav-tabs-link-hover-border-color: var(--bs-secondary-bg) var(--bs-secondary-bg) var(--bs-border-color);--bs-nav-tabs-link-active-color: var(--bs-emphasis-color);--bs-nav-tabs-link-active-bg: var(--bs-body-bg);--bs-nav-tabs-link-active-border-color: var(--bs-border-color) var(--bs-border-color) var(--bs-body-bg);border-bottom:var(--bs-nav-tabs-border-width) solid var(--bs-nav-tabs-border-color)}.nav-tabs .nav-link{margin-bottom:calc(-1 * var(--bs-nav-tabs-border-width));border:var(--bs-nav-tabs-border-width) solid transparent;border-top-left-radius:var(--bs-nav-tabs-border-radius);border-top-right-radius:var(--bs-nav-tabs-border-radius)}.nav-tabs .nav-link:hover,.nav-tabs .nav-link:focus{isolation:isolate;border-color:var(--bs-nav-tabs-link-hover-border-color)}.nav-tabs .nav-link.active,.nav-tabs .nav-item.show .nav-link{color:var(--bs-nav-tabs-link-active-color);background-color:var(--bs-nav-tabs-link-active-bg);border-color:var(--bs-nav-tabs-link-active-border-color)}.nav-tabs .dropdown-menu{margin-top:calc(-1 * 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.show>.nav-link{font-weight:700;color:var(--bs-nav-underline-link-active-color);border-bottom-color:currentcolor}.nav-fill>.nav-link,.nav-fill .nav-item{flex:1 1 auto;-webkit-flex:1 1 auto;text-align:center}.nav-justified>.nav-link,.nav-justified .nav-item{flex-basis:0;-webkit-flex-basis:0;flex-grow:1;-webkit-flex-grow:1;text-align:center}.nav-fill .nav-item .nav-link,.nav-justified .nav-item .nav-link{width:100%}.tab-content>.tab-pane{display:none}.tab-content>.active{display:block}.navbar{--bs-navbar-padding-x: 0;--bs-navbar-padding-y: .5rem;--bs-navbar-color: #255783;--bs-navbar-hover-color: rgba(var(--bs-emphasis-color-rgb), 0.8);--bs-navbar-disabled-color: rgba(var(--bs-emphasis-color-rgb), 0.3);--bs-navbar-active-color: rgba(var(--bs-emphasis-color-rgb), 1);--bs-navbar-brand-padding-y: .3125rem;--bs-navbar-brand-margin-end: 1rem;--bs-navbar-brand-font-size: 1.25rem;--bs-navbar-brand-color: rgba(var(--bs-emphasis-color-rgb), 1);--bs-navbar-brand-hover-color: 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992px){.navbar-expand-lg{flex-wrap:nowrap;-webkit-flex-wrap:nowrap;justify-content:flex-start;-webkit-justify-content:flex-start}.navbar-expand-lg .navbar-nav{flex-direction:row;-webkit-flex-direction:row}.navbar-expand-lg .navbar-nav .dropdown-menu{position:absolute}.navbar-expand-lg .navbar-nav .nav-link{padding-right:var(--bs-navbar-nav-link-padding-x);padding-left:var(--bs-navbar-nav-link-padding-x)}.navbar-expand-lg .navbar-nav-scroll{overflow:visible}.navbar-expand-lg .navbar-collapse{display:flex !important;display:-webkit-flex !important;flex-basis:auto;-webkit-flex-basis:auto}.navbar-expand-lg .navbar-toggler{display:none}.navbar-expand-lg .offcanvas{position:static;z-index:auto;flex-grow:1;-webkit-flex-grow:1;width:auto !important;height:auto !important;visibility:visible !important;background-color:transparent !important;border:0 !important;transform:none !important;transition:none}.navbar-expand-lg .offcanvas .offcanvas-header{display:none}.navbar-expand-lg .offcanvas 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.offcanvas{position:static;z-index:auto;flex-grow:1;-webkit-flex-grow:1;width:auto !important;height:auto !important;visibility:visible !important;background-color:transparent !important;border:0 !important;transform:none !important;transition:none}.navbar-expand-xxl .offcanvas .offcanvas-header{display:none}.navbar-expand-xxl .offcanvas .offcanvas-body{display:flex;display:-webkit-flex;flex-grow:0;-webkit-flex-grow:0;padding:0;overflow-y:visible}}.navbar-expand{flex-wrap:nowrap;-webkit-flex-wrap:nowrap;justify-content:flex-start;-webkit-justify-content:flex-start}.navbar-expand .navbar-nav{flex-direction:row;-webkit-flex-direction:row}.navbar-expand .navbar-nav .dropdown-menu{position:absolute}.navbar-expand .navbar-nav .nav-link{padding-right:var(--bs-navbar-nav-link-padding-x);padding-left:var(--bs-navbar-nav-link-padding-x)}.navbar-expand .navbar-nav-scroll{overflow:visible}.navbar-expand .navbar-collapse{display:flex !important;display:-webkit-flex !important;flex-basis:auto;-webkit-flex-basis:auto}.navbar-expand .navbar-toggler{display:none}.navbar-expand .offcanvas{position:static;z-index:auto;flex-grow:1;-webkit-flex-grow:1;width:auto !important;height:auto !important;visibility:visible !important;background-color:transparent !important;border:0 !important;transform:none !important;transition:none}.navbar-expand .offcanvas .offcanvas-header{display:none}.navbar-expand .offcanvas .offcanvas-body{display:flex;display:-webkit-flex;flex-grow:0;-webkit-flex-grow:0;padding:0;overflow-y:visible}.navbar-dark,.navbar[data-bs-theme="dark"]{--bs-navbar-color: rgba(var(--bs-emphasis-color-rgb), 0.55);--bs-navbar-hover-color: rgba(var(--bs-emphasis-color-rgb), 0.75);--bs-navbar-disabled-color: rgba(var(--bs-emphasis-color-rgb), 0.25);--bs-navbar-active-color: rgba(var(--bs-emphasis-color-rgb), 1);--bs-navbar-brand-color: rgba(var(--bs-emphasis-color-rgb), 1);--bs-navbar-brand-hover-color: rgba(var(--bs-emphasis-color-rgb), 1);--bs-navbar-toggler-border-color: rgba(var(--bs-emphasis-color-rgb), 0.1);--bs-navbar-toggler-icon-bg: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 30 30'%3e%3cpath stroke='rgba%28255,255,255,0.75%29' stroke-linecap='round' stroke-miterlimit='10' stroke-width='2' d='M4 7h22M4 15h22M4 23h22'/%3e%3c/svg%3e")}[data-bs-theme="dark"] .navbar-toggler-icon{--bs-navbar-toggler-icon-bg: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 30 30'%3e%3cpath stroke='rgba%28255,255,255,0.75%29' stroke-linecap='round' stroke-miterlimit='10' stroke-width='2' d='M4 7h22M4 15h22M4 23h22'/%3e%3c/svg%3e")}.card{--bs-card-spacer-y: 1rem;--bs-card-spacer-x: 1rem;--bs-card-title-spacer-y: .5rem;--bs-card-title-color: ;--bs-card-subtitle-color: ;--bs-card-border-width: var(--bs-border-width);--bs-card-border-color: var(--bs-border-color-translucent);--bs-card-border-radius: var(--bs-border-radius);--bs-card-box-shadow: ;--bs-card-inner-border-radius: calc(var(--bs-border-radius) - (var(--bs-border-width)));--bs-card-cap-padding-y: .5rem;--bs-card-cap-padding-x: 1rem;--bs-card-cap-bg: rgba(var(--bs-body-color-rgb), 0.03);--bs-card-cap-color: ;--bs-card-height: ;--bs-card-color: ;--bs-card-bg: var(--bs-body-bg);--bs-card-img-overlay-padding: 1rem;--bs-card-group-margin: .75rem;position:relative;display:flex;display:-webkit-flex;flex-direction:column;-webkit-flex-direction:column;min-width:0;height:var(--bs-card-height);color:var(--bs-body-color);word-wrap:break-word;background-color:var(--bs-card-bg);background-clip:border-box;border:var(--bs-card-border-width) solid var(--bs-card-border-color);border-radius:var(--bs-card-border-radius)}.card>hr{margin-right:0;margin-left:0}.card>.list-group{border-top:inherit;border-bottom:inherit}.card>.list-group:first-child{border-top-width:0;border-top-left-radius:var(--bs-card-inner-border-radius);border-top-right-radius:var(--bs-card-inner-border-radius)}.card>.list-group:last-child{border-bottom-width:0;border-bottom-right-radius:var(--bs-card-inner-border-radius);border-bottom-left-radius:var(--bs-card-inner-border-radius)}.card>.card-header+.list-group,.card>.list-group+.card-footer{border-top:0}.card-body{flex:1 1 auto;-webkit-flex:1 1 auto;padding:var(--bs-card-spacer-y) var(--bs-card-spacer-x);color:var(--bs-card-color)}.card-title{margin-bottom:var(--bs-card-title-spacer-y);color:var(--bs-card-title-color)}.card-subtitle{margin-top:calc(-.5 * 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url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%230f2334'%3e%3cpath fill-rule='evenodd' d='M1.646 4.646a.5.5 0 0 1 .708 0L8 10.293l5.646-5.647a.5.5 0 0 1 .708.708l-6 6a.5.5 0 0 1-.708 0l-6-6a.5.5 0 0 1 0-.708z'/%3e%3c/svg%3e");--bs-accordion-btn-focus-border-color: #92abc1;--bs-accordion-btn-focus-box-shadow: 0 0 0 .25rem rgba(37,87,131,0.25);--bs-accordion-body-padding-x: 1.25rem;--bs-accordion-body-padding-y: 1rem;--bs-accordion-active-color: var(--bs-primary-text-emphasis);--bs-accordion-active-bg: var(--bs-primary-bg-subtle)}.accordion-button{position:relative;display:flex;display:-webkit-flex;align-items:center;-webkit-align-items:center;width:100%;padding:var(--bs-accordion-btn-padding-y) var(--bs-accordion-btn-padding-x);font-size:1rem;color:var(--bs-accordion-btn-color);text-align:left;background-color:var(--bs-accordion-btn-bg);border:0;border-radius:0;overflow-anchor:none;transition:var(--bs-accordion-transition)}@media 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reduce){.accordion-button::after{transition:none}}.accordion-button:hover{z-index:2}.accordion-button:focus{z-index:3;border-color:var(--bs-accordion-btn-focus-border-color);outline:0;box-shadow:var(--bs-accordion-btn-focus-box-shadow)}.accordion-header{margin-bottom:0}.accordion-item{color:var(--bs-accordion-color);background-color:var(--bs-accordion-bg);border:var(--bs-accordion-border-width) solid var(--bs-accordion-border-color)}.accordion-item:first-of-type{border-top-left-radius:var(--bs-accordion-border-radius);border-top-right-radius:var(--bs-accordion-border-radius)}.accordion-item:first-of-type .accordion-button{border-top-left-radius:var(--bs-accordion-inner-border-radius);border-top-right-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:not(:first-of-type){border-top:0}.accordion-item:last-of-type{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-item:last-of-type .accordion-button.collapsed{border-bottom-right-radius:var(--bs-accordion-inner-border-radius);border-bottom-left-radius:var(--bs-accordion-inner-border-radius)}.accordion-item:last-of-type .accordion-collapse{border-bottom-right-radius:var(--bs-accordion-border-radius);border-bottom-left-radius:var(--bs-accordion-border-radius)}.accordion-body{padding:var(--bs-accordion-body-padding-y) var(--bs-accordion-body-padding-x)}.accordion-flush .accordion-collapse{border-width:0}.accordion-flush .accordion-item{border-right:0;border-left:0;border-radius:0}.accordion-flush .accordion-item:first-child{border-top:0}.accordion-flush .accordion-item:last-child{border-bottom:0}.accordion-flush .accordion-item .accordion-button,.accordion-flush .accordion-item .accordion-button.collapsed{border-radius:0}[data-bs-theme="dark"] .accordion-button::after{--bs-accordion-btn-icon: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%237c9ab5'%3e%3cpath fill-rule='evenodd' d='M1.646 4.646a.5.5 0 0 1 .708 0L8 10.293l5.646-5.647a.5.5 0 0 1 .708.708l-6 6a.5.5 0 0 1-.708 0l-6-6a.5.5 0 0 1 0-.708z'/%3e%3c/svg%3e");--bs-accordion-btn-active-icon: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%237c9ab5'%3e%3cpath fill-rule='evenodd' d='M1.646 4.646a.5.5 0 0 1 .708 0L8 10.293l5.646-5.647a.5.5 0 0 1 .708.708l-6 6a.5.5 0 0 1-.708 0l-6-6a.5.5 0 0 1 0-.708z'/%3e%3c/svg%3e")}.breadcrumb{--bs-breadcrumb-padding-x: 0;--bs-breadcrumb-padding-y: 0;--bs-breadcrumb-margin-bottom: 1rem;--bs-breadcrumb-bg: ;--bs-breadcrumb-border-radius: ;--bs-breadcrumb-divider-color: var(--bs-secondary-color);--bs-breadcrumb-item-padding-x: .5rem;--bs-breadcrumb-item-active-color: var(--bs-secondary-color);display:flex;display:-webkit-flex;flex-wrap:wrap;-webkit-flex-wrap:wrap;padding:var(--bs-breadcrumb-padding-y) var(--bs-breadcrumb-padding-x);margin-bottom:var(--bs-breadcrumb-margin-bottom);font-size:var(--bs-breadcrumb-font-size);list-style:none;background-color:var(--bs-breadcrumb-bg);border-radius:var(--bs-breadcrumb-border-radius)}.breadcrumb-item+.breadcrumb-item{padding-left:var(--bs-breadcrumb-item-padding-x)}.breadcrumb-item+.breadcrumb-item::before{float:left;padding-right:var(--bs-breadcrumb-item-padding-x);color:var(--bs-breadcrumb-divider-color);content:var(--bs-breadcrumb-divider, "/") /* rtl: var(--bs-breadcrumb-divider, "/") */}.breadcrumb-item.active{color:var(--bs-breadcrumb-item-active-color)}.pagination{--bs-pagination-padding-x: .75rem;--bs-pagination-padding-y: .375rem;--bs-pagination-font-size:1rem;--bs-pagination-color: var(--bs-link-color);--bs-pagination-bg: var(--bs-body-bg);--bs-pagination-border-width: var(--bs-border-width);--bs-pagination-border-color: var(--bs-border-color);--bs-pagination-border-radius: var(--bs-border-radius);--bs-pagination-hover-color: var(--bs-link-hover-color);--bs-pagination-hover-bg: var(--bs-tertiary-bg);--bs-pagination-hover-border-color: var(--bs-border-color);--bs-pagination-focus-color: var(--bs-link-hover-color);--bs-pagination-focus-bg: var(--bs-secondary-bg);--bs-pagination-focus-box-shadow: 0 0 0 .25rem rgba(37,87,131,0.25);--bs-pagination-active-color: #fff;--bs-pagination-active-bg: #255783;--bs-pagination-active-border-color: #255783;--bs-pagination-disabled-color: var(--bs-secondary-color);--bs-pagination-disabled-bg: var(--bs-secondary-bg);--bs-pagination-disabled-border-color: var(--bs-border-color);display:flex;display:-webkit-flex;padding-left:0;list-style:none}.page-link{position:relative;display:block;padding:var(--bs-pagination-padding-y) var(--bs-pagination-padding-x);font-size:var(--bs-pagination-font-size);color:var(--bs-pagination-color);text-decoration:none;-webkit-text-decoration:none;-moz-text-decoration:none;-ms-text-decoration:none;-o-text-decoration:none;background-color:var(--bs-pagination-bg);border:var(--bs-pagination-border-width) solid var(--bs-pagination-border-color);transition:color 0.15s ease-in-out,background-color 0.15s ease-in-out,border-color 0.15s ease-in-out,box-shadow 0.15s ease-in-out}@media (prefers-reduced-motion: reduce){.page-link{transition:none}}.page-link:hover{z-index:2;color:var(--bs-pagination-hover-color);background-color:var(--bs-pagination-hover-bg);border-color:var(--bs-pagination-hover-border-color)}.page-link:focus{z-index:3;color:var(--bs-pagination-focus-color);background-color:var(--bs-pagination-focus-bg);outline:0;box-shadow:var(--bs-pagination-focus-box-shadow)}.page-link.active,.active>.page-link{z-index:3;color:var(--bs-pagination-active-color);background-color:var(--bs-pagination-active-bg);border-color:var(--bs-pagination-active-border-color)}.page-link.disabled,.disabled>.page-link{color:var(--bs-pagination-disabled-color);pointer-events:none;background-color:var(--bs-pagination-disabled-bg);border-color:var(--bs-pagination-disabled-border-color)}.page-item:not(:first-child) .page-link{margin-left:calc(var(--bs-border-width) * -1)}.page-item:first-child .page-link{border-top-left-radius:var(--bs-pagination-border-radius);border-bottom-left-radius:var(--bs-pagination-border-radius)}.page-item:last-child .page-link{border-top-right-radius:var(--bs-pagination-border-radius);border-bottom-right-radius:var(--bs-pagination-border-radius)}.pagination-lg{--bs-pagination-padding-x: 1.5rem;--bs-pagination-padding-y: .75rem;--bs-pagination-font-size:1.25rem;--bs-pagination-border-radius: var(--bs-border-radius-lg)}.pagination-sm{--bs-pagination-padding-x: .5rem;--bs-pagination-padding-y: .25rem;--bs-pagination-font-size:.875rem;--bs-pagination-border-radius: var(--bs-border-radius-sm)}.badge{--bs-badge-padding-x: .65em;--bs-badge-padding-y: .35em;--bs-badge-font-size:.75em;--bs-badge-font-weight: 700;--bs-badge-color: #fff;--bs-badge-border-radius: var(--bs-border-radius);display:inline-block;padding:var(--bs-badge-padding-y) var(--bs-badge-padding-x);font-size:var(--bs-badge-font-size);font-weight:var(--bs-badge-font-weight);line-height:1;color:var(--bs-badge-color);text-align:center;white-space:nowrap;vertical-align:baseline;border-radius:var(--bs-badge-border-radius)}.badge:empty{display:none}.btn .badge{position:relative;top:-1px}.alert{--bs-alert-bg: transparent;--bs-alert-padding-x: 1rem;--bs-alert-padding-y: 1rem;--bs-alert-margin-bottom: 1rem;--bs-alert-color: inherit;--bs-alert-border-color: transparent;--bs-alert-border: var(--bs-border-width) solid var(--bs-alert-border-color);--bs-alert-border-radius: var(--bs-border-radius);--bs-alert-link-color: inherit;position:relative;padding:var(--bs-alert-padding-y) var(--bs-alert-padding-x);margin-bottom:var(--bs-alert-margin-bottom);color:var(--bs-alert-color);background-color:var(--bs-alert-bg);border:var(--bs-alert-border);border-radius:var(--bs-alert-border-radius)}.alert-heading{color:inherit}.alert-link{font-weight:700;color:var(--bs-alert-link-color)}.alert-dismissible{padding-right:3rem}.alert-dismissible .btn-close{position:absolute;top:0;right:0;z-index:2;padding:1.25rem 1rem}.alert-default{--bs-alert-color: var(--bs-default-text-emphasis);--bs-alert-bg: var(--bs-default-bg-subtle);--bs-alert-border-color: var(--bs-default-border-subtle);--bs-alert-link-color: var(--bs-default-text-emphasis)}.alert-primary{--bs-alert-color: var(--bs-primary-text-emphasis);--bs-alert-bg: var(--bs-primary-bg-subtle);--bs-alert-border-color: var(--bs-primary-border-subtle);--bs-alert-link-color: var(--bs-primary-text-emphasis)}.alert-secondary{--bs-alert-color: var(--bs-secondary-text-emphasis);--bs-alert-bg: var(--bs-secondary-bg-subtle);--bs-alert-border-color: var(--bs-secondary-border-subtle);--bs-alert-link-color: var(--bs-secondary-text-emphasis)}.alert-success{--bs-alert-color: var(--bs-success-text-emphasis);--bs-alert-bg: var(--bs-success-bg-subtle);--bs-alert-border-color: var(--bs-success-border-subtle);--bs-alert-link-color: var(--bs-success-text-emphasis)}.alert-info{--bs-alert-color: var(--bs-info-text-emphasis);--bs-alert-bg: var(--bs-info-bg-subtle);--bs-alert-border-color: var(--bs-info-border-subtle);--bs-alert-link-color: var(--bs-info-text-emphasis)}.alert-warning{--bs-alert-color: var(--bs-warning-text-emphasis);--bs-alert-bg: var(--bs-warning-bg-subtle);--bs-alert-border-color: var(--bs-warning-border-subtle);--bs-alert-link-color: var(--bs-warning-text-emphasis)}.alert-danger{--bs-alert-color: var(--bs-danger-text-emphasis);--bs-alert-bg: var(--bs-danger-bg-subtle);--bs-alert-border-color: var(--bs-danger-border-subtle);--bs-alert-link-color: var(--bs-danger-text-emphasis)}.alert-light{--bs-alert-color: var(--bs-light-text-emphasis);--bs-alert-bg: var(--bs-light-bg-subtle);--bs-alert-border-color: var(--bs-light-border-subtle);--bs-alert-link-color: var(--bs-light-text-emphasis)}.alert-dark{--bs-alert-color: var(--bs-dark-text-emphasis);--bs-alert-bg: var(--bs-dark-bg-subtle);--bs-alert-border-color: var(--bs-dark-border-subtle);--bs-alert-link-color: var(--bs-dark-text-emphasis)}@keyframes progress-bar-stripes{0%{background-position-x:1rem}}.progress,.progress-stacked{--bs-progress-height: 1rem;--bs-progress-font-size:.75rem;--bs-progress-bg: var(--bs-secondary-bg);--bs-progress-border-radius: var(--bs-border-radius);--bs-progress-box-shadow: var(--bs-box-shadow-inset);--bs-progress-bar-color: #fff;--bs-progress-bar-bg: #255783;--bs-progress-bar-transition: width 0.6s ease;display:flex;display:-webkit-flex;height:var(--bs-progress-height);overflow:hidden;font-size:var(--bs-progress-font-size);background-color:var(--bs-progress-bg);border-radius:var(--bs-progress-border-radius)}.progress-bar{display:flex;display:-webkit-flex;flex-direction:column;-webkit-flex-direction:column;justify-content:center;-webkit-justify-content:center;overflow:hidden;color:var(--bs-progress-bar-color);text-align:center;white-space:nowrap;background-color:var(--bs-progress-bar-bg);transition:var(--bs-progress-bar-transition)}@media (prefers-reduced-motion: reduce){.progress-bar{transition:none}}.progress-bar-striped{background-image:linear-gradient(45deg, rgba(255,255,255,0.15) 25%, transparent 25%, transparent 50%, rgba(255,255,255,0.15) 50%, rgba(255,255,255,0.15) 75%, transparent 75%, transparent);background-size:var(--bs-progress-height) var(--bs-progress-height)}.progress-stacked>.progress{overflow:visible}.progress-stacked>.progress>.progress-bar{width:100%}.progress-bar-animated{animation:1s linear infinite progress-bar-stripes}@media (prefers-reduced-motion: reduce){.progress-bar-animated{animation:none}}.list-group{--bs-list-group-color: var(--bs-body-color);--bs-list-group-bg: var(--bs-body-bg);--bs-list-group-border-color: var(--bs-border-color);--bs-list-group-border-width: var(--bs-border-width);--bs-list-group-border-radius: var(--bs-border-radius);--bs-list-group-item-padding-x: 1rem;--bs-list-group-item-padding-y: .5rem;--bs-list-group-action-color: var(--bs-secondary-color);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-tertiary-bg);--bs-list-group-action-active-color: var(--bs-body-color);--bs-list-group-action-active-bg: var(--bs-secondary-bg);--bs-list-group-disabled-color: var(--bs-secondary-color);--bs-list-group-disabled-bg: var(--bs-body-bg);--bs-list-group-active-color: #fff;--bs-list-group-active-bg: #255783;--bs-list-group-active-border-color: #255783;display:flex;display:-webkit-flex;flex-direction:column;-webkit-flex-direction:column;padding-left:0;margin-bottom:0;border-radius:var(--bs-list-group-border-radius)}.list-group-numbered{list-style-type:none;counter-reset:section}.list-group-numbered>.list-group-item::before{content:counters(section, ".") ". ";counter-increment:section}.list-group-item-action{width:100%;color:var(--bs-list-group-action-color);text-align:inherit}.list-group-item-action:hover,.list-group-item-action:focus{z-index:1;color:var(--bs-list-group-action-hover-color);text-decoration:none;background-color:var(--bs-list-group-action-hover-bg)}.list-group-item-action:active{color:var(--bs-list-group-action-active-color);background-color:var(--bs-list-group-action-active-bg)}.list-group-item{position:relative;display:block;padding:var(--bs-list-group-item-padding-y) var(--bs-list-group-item-padding-x);color:var(--bs-list-group-color);text-decoration:none;-webkit-text-decoration:none;-moz-text-decoration:none;-ms-text-decoration:none;-o-text-decoration:none;background-color:var(--bs-list-group-bg);border:var(--bs-list-group-border-width) solid var(--bs-list-group-border-color)}.list-group-item:first-child{border-top-left-radius:inherit;border-top-right-radius:inherit}.list-group-item:last-child{border-bottom-right-radius:inherit;border-bottom-left-radius:inherit}.list-group-item.disabled,.list-group-item:disabled{color:var(--bs-list-group-disabled-color);pointer-events:none;background-color:var(--bs-list-group-disabled-bg)}.list-group-item.active{z-index:2;color:var(--bs-list-group-active-color);background-color:var(--bs-list-group-active-bg);border-color:var(--bs-list-group-active-border-color)}.list-group-item+.list-group-item{border-top-width:0}.list-group-item+.list-group-item.active{margin-top:calc(-1 * var(--bs-list-group-border-width));border-top-width:var(--bs-list-group-border-width)}.list-group-horizontal{flex-direction:row;-webkit-flex-direction:row}.list-group-horizontal>.list-group-item:first-child:not(:last-child){border-bottom-left-radius:var(--bs-list-group-border-radius);border-top-right-radius:0}.list-group-horizontal>.list-group-item:last-child:not(:first-child){border-top-right-radius:var(--bs-list-group-border-radius);border-bottom-left-radius:0}.list-group-horizontal>.list-group-item.active{margin-top:0}.list-group-horizontal>.list-group-item+.list-group-item{border-top-width:var(--bs-list-group-border-width);border-left-width:0}.list-group-horizontal>.list-group-item+.list-group-item.active{margin-left:calc(-1 * var(--bs-list-group-border-width));border-left-width:var(--bs-list-group-border-width)}@media (min-width: 576px){.list-group-horizontal-sm{flex-direction:row;-webkit-flex-direction:row}.list-group-horizontal-sm>.list-group-item:first-child:not(:last-child){border-bottom-left-radius:var(--bs-list-group-border-radius);border-top-right-radius:0}.list-group-horizontal-sm>.list-group-item:last-child:not(:first-child){border-top-right-radius:var(--bs-list-group-border-radius);border-bottom-left-radius:0}.list-group-horizontal-sm>.list-group-item.active{margin-top:0}.list-group-horizontal-sm>.list-group-item+.list-group-item{border-top-width:var(--bs-list-group-border-width);border-left-width:0}.list-group-horizontal-sm>.list-group-item+.list-group-item.active{margin-left:calc(-1 * var(--bs-list-group-border-width));border-left-width:var(--bs-list-group-border-width)}}@media (min-width: 768px){.list-group-horizontal-md{flex-direction:row;-webkit-flex-direction:row}.list-group-horizontal-md>.list-group-item:first-child:not(:last-child){border-bottom-left-radius:var(--bs-list-group-border-radius);border-top-right-radius:0}.list-group-horizontal-md>.list-group-item:last-child:not(:first-child){border-top-right-radius:var(--bs-list-group-border-radius);border-bottom-left-radius:0}.list-group-horizontal-md>.list-group-item.active{margin-top:0}.list-group-horizontal-md>.list-group-item+.list-group-item{border-top-width:var(--bs-list-group-border-width);border-left-width:0}.list-group-horizontal-md>.list-group-item+.list-group-item.active{margin-left:calc(-1 * var(--bs-list-group-border-width));border-left-width:var(--bs-list-group-border-width)}}@media (min-width: 992px){.list-group-horizontal-lg{flex-direction:row;-webkit-flex-direction:row}.list-group-horizontal-lg>.list-group-item:first-child:not(:last-child){border-bottom-left-radius:var(--bs-list-group-border-radius);border-top-right-radius:0}.list-group-horizontal-lg>.list-group-item:last-child:not(:first-child){border-top-right-radius:var(--bs-list-group-border-radius);border-bottom-left-radius:0}.list-group-horizontal-lg>.list-group-item.active{margin-top:0}.list-group-horizontal-lg>.list-group-item+.list-group-item{border-top-width:var(--bs-list-group-border-width);border-left-width:0}.list-group-horizontal-lg>.list-group-item+.list-group-item.active{margin-left:calc(-1 * var(--bs-list-group-border-width));border-left-width:var(--bs-list-group-border-width)}}@media (min-width: 1200px){.list-group-horizontal-xl{flex-direction:row;-webkit-flex-direction:row}.list-group-horizontal-xl>.list-group-item:first-child:not(:last-child){border-bottom-left-radius:var(--bs-list-group-border-radius);border-top-right-radius:0}.list-group-horizontal-xl>.list-group-item:last-child:not(:first-child){border-top-right-radius:var(--bs-list-group-border-radius);border-bottom-left-radius:0}.list-group-horizontal-xl>.list-group-item.active{margin-top:0}.list-group-horizontal-xl>.list-group-item+.list-group-item{border-top-width:var(--bs-list-group-border-width);border-left-width:0}.list-group-horizontal-xl>.list-group-item+.list-group-item.active{margin-left:calc(-1 * var(--bs-list-group-border-width));border-left-width:var(--bs-list-group-border-width)}}@media (min-width: 1400px){.list-group-horizontal-xxl{flex-direction:row;-webkit-flex-direction:row}.list-group-horizontal-xxl>.list-group-item:first-child:not(:last-child){border-bottom-left-radius:var(--bs-list-group-border-radius);border-top-right-radius:0}.list-group-horizontal-xxl>.list-group-item:last-child:not(:first-child){border-top-right-radius:var(--bs-list-group-border-radius);border-bottom-left-radius:0}.list-group-horizontal-xxl>.list-group-item.active{margin-top:0}.list-group-horizontal-xxl>.list-group-item+.list-group-item{border-top-width:var(--bs-list-group-border-width);border-left-width:0}.list-group-horizontal-xxl>.list-group-item+.list-group-item.active{margin-left:calc(-1 * var(--bs-list-group-border-width));border-left-width:var(--bs-list-group-border-width)}}.list-group-flush{border-radius:0}.list-group-flush>.list-group-item{border-width:0 0 var(--bs-list-group-border-width)}.list-group-flush>.list-group-item:last-child{border-bottom-width:0}.list-group-item-default{--bs-list-group-color: var(--bs-default-text-emphasis);--bs-list-group-bg: var(--bs-default-bg-subtle);--bs-list-group-border-color: var(--bs-default-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-default-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-default-border-subtle);--bs-list-group-active-color: var(--bs-default-bg-subtle);--bs-list-group-active-bg: var(--bs-default-text-emphasis);--bs-list-group-active-border-color: var(--bs-default-text-emphasis)}.list-group-item-primary{--bs-list-group-color: var(--bs-primary-text-emphasis);--bs-list-group-bg: var(--bs-primary-bg-subtle);--bs-list-group-border-color: var(--bs-primary-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-primary-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-primary-border-subtle);--bs-list-group-active-color: var(--bs-primary-bg-subtle);--bs-list-group-active-bg: var(--bs-primary-text-emphasis);--bs-list-group-active-border-color: var(--bs-primary-text-emphasis)}.list-group-item-secondary{--bs-list-group-color: var(--bs-secondary-text-emphasis);--bs-list-group-bg: var(--bs-secondary-bg-subtle);--bs-list-group-border-color: var(--bs-secondary-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-secondary-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-secondary-border-subtle);--bs-list-group-active-color: var(--bs-secondary-bg-subtle);--bs-list-group-active-bg: var(--bs-secondary-text-emphasis);--bs-list-group-active-border-color: var(--bs-secondary-text-emphasis)}.list-group-item-success{--bs-list-group-color: var(--bs-success-text-emphasis);--bs-list-group-bg: var(--bs-success-bg-subtle);--bs-list-group-border-color: var(--bs-success-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-success-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-success-border-subtle);--bs-list-group-active-color: var(--bs-success-bg-subtle);--bs-list-group-active-bg: var(--bs-success-text-emphasis);--bs-list-group-active-border-color: var(--bs-success-text-emphasis)}.list-group-item-info{--bs-list-group-color: var(--bs-info-text-emphasis);--bs-list-group-bg: var(--bs-info-bg-subtle);--bs-list-group-border-color: var(--bs-info-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-info-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-info-border-subtle);--bs-list-group-active-color: var(--bs-info-bg-subtle);--bs-list-group-active-bg: var(--bs-info-text-emphasis);--bs-list-group-active-border-color: var(--bs-info-text-emphasis)}.list-group-item-warning{--bs-list-group-color: var(--bs-warning-text-emphasis);--bs-list-group-bg: var(--bs-warning-bg-subtle);--bs-list-group-border-color: var(--bs-warning-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-warning-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-warning-border-subtle);--bs-list-group-active-color: var(--bs-warning-bg-subtle);--bs-list-group-active-bg: var(--bs-warning-text-emphasis);--bs-list-group-active-border-color: var(--bs-warning-text-emphasis)}.list-group-item-danger{--bs-list-group-color: var(--bs-danger-text-emphasis);--bs-list-group-bg: var(--bs-danger-bg-subtle);--bs-list-group-border-color: var(--bs-danger-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-danger-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-danger-border-subtle);--bs-list-group-active-color: var(--bs-danger-bg-subtle);--bs-list-group-active-bg: var(--bs-danger-text-emphasis);--bs-list-group-active-border-color: var(--bs-danger-text-emphasis)}.list-group-item-light{--bs-list-group-color: var(--bs-light-text-emphasis);--bs-list-group-bg: var(--bs-light-bg-subtle);--bs-list-group-border-color: var(--bs-light-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-light-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-light-border-subtle);--bs-list-group-active-color: var(--bs-light-bg-subtle);--bs-list-group-active-bg: var(--bs-light-text-emphasis);--bs-list-group-active-border-color: var(--bs-light-text-emphasis)}.list-group-item-dark{--bs-list-group-color: var(--bs-dark-text-emphasis);--bs-list-group-bg: var(--bs-dark-bg-subtle);--bs-list-group-border-color: var(--bs-dark-border-subtle);--bs-list-group-action-hover-color: var(--bs-emphasis-color);--bs-list-group-action-hover-bg: var(--bs-dark-border-subtle);--bs-list-group-action-active-color: var(--bs-emphasis-color);--bs-list-group-action-active-bg: var(--bs-dark-border-subtle);--bs-list-group-active-color: var(--bs-dark-bg-subtle);--bs-list-group-active-bg: var(--bs-dark-text-emphasis);--bs-list-group-active-border-color: var(--bs-dark-text-emphasis)}.btn-close{--bs-btn-close-color: #000;--bs-btn-close-bg: url("data:image/svg+xml,%3csvg xmlns='http://www.w3.org/2000/svg' viewBox='0 0 16 16' fill='%23000'%3e%3cpath d='M.293.293a1 1 0 0 1 1.414 0L8 6.586 14.293.293a1 1 0 1 1 1.414 1.414L9.414 8l6.293 6.293a1 1 0 0 1-1.414 1.414L8 9.414l-6.293 6.293a1 1 0 0 1-1.414-1.414L6.586 8 .293 1.707a1 1 0 0 1 0-1.414z'/%3e%3c/svg%3e");--bs-btn-close-opacity: .5;--bs-btn-close-hover-opacity: .75;--bs-btn-close-focus-shadow: 0 0 0 .25rem rgba(37,87,131,0.25);--bs-btn-close-focus-opacity: 1;--bs-btn-close-disabled-opacity: .25;--bs-btn-close-white-filter: invert(1) grayscale(100%) brightness(200%);box-sizing:content-box;width:1em;height:1em;padding:.25em .25em;color:var(--bs-btn-close-color);background:transparent var(--bs-btn-close-bg) center/1em auto no-repeat;border:0;border-radius:.375rem;opacity:var(--bs-btn-close-opacity)}.btn-close:hover{color:var(--bs-btn-close-color);text-decoration:none;opacity:var(--bs-btn-close-hover-opacity)}.btn-close:focus{outline:0;box-shadow:var(--bs-btn-close-focus-shadow);opacity:var(--bs-btn-close-focus-opacity)}.btn-close:disabled,.btn-close.disabled{pointer-events:none;user-select:none;-webkit-user-select:none;-moz-user-select:none;-ms-user-select:none;-o-user-select:none;opacity:var(--bs-btn-close-disabled-opacity)}.btn-close-white{filter:var(--bs-btn-close-white-filter)}[data-bs-theme="dark"] .btn-close{filter:var(--bs-btn-close-white-filter)}.toast{--bs-toast-zindex: 1090;--bs-toast-padding-x: .75rem;--bs-toast-padding-y: .5rem;--bs-toast-spacing: 1.5rem;--bs-toast-max-width: 350px;--bs-toast-font-size:.875rem;--bs-toast-color: ;--bs-toast-bg: rgba(var(--bs-body-bg-rgb), 0.85);--bs-toast-border-width: var(--bs-border-width);--bs-toast-border-color: var(--bs-border-color-translucent);--bs-toast-border-radius: var(--bs-border-radius);--bs-toast-box-shadow: var(--bs-box-shadow);--bs-toast-header-color: var(--bs-secondary-color);--bs-toast-header-bg: rgba(var(--bs-body-bg-rgb), 0.85);--bs-toast-header-border-color: var(--bs-border-color-translucent);width:var(--bs-toast-max-width);max-width:100%;font-size:var(--bs-toast-font-size);color:var(--bs-toast-color);pointer-events:auto;background-color:var(--bs-toast-bg);background-clip:padding-box;border:var(--bs-toast-border-width) solid var(--bs-toast-border-color);box-shadow:var(--bs-toast-box-shadow);border-radius:var(--bs-toast-border-radius)}.toast.showing{opacity:0}.toast:not(.show){display:none}.toast-container{--bs-toast-zindex: 1090;position:absolute;z-index:var(--bs-toast-zindex);width:max-content;width:-webkit-max-content;width:-moz-max-content;width:-ms-max-content;width:-o-max-content;max-width:100%;pointer-events:none}.toast-container>:not(:last-child){margin-bottom:var(--bs-toast-spacing)}.toast-header{display:flex;display:-webkit-flex;align-items:center;-webkit-align-items:center;padding:var(--bs-toast-padding-y) var(--bs-toast-padding-x);color:var(--bs-toast-header-color);background-color:var(--bs-toast-header-bg);background-clip:padding-box;border-bottom:var(--bs-toast-border-width) solid var(--bs-toast-header-border-color);border-top-left-radius:calc(var(--bs-toast-border-radius) - var(--bs-toast-border-width));border-top-right-radius:calc(var(--bs-toast-border-radius) - var(--bs-toast-border-width))}.toast-header .btn-close{margin-right:calc(-.5 * var(--bs-toast-padding-x));margin-left:var(--bs-toast-padding-x)}.toast-body{padding:var(--bs-toast-padding-x);word-wrap:break-word}.modal{--bs-modal-zindex: 1055;--bs-modal-width: 500px;--bs-modal-padding: 1rem;--bs-modal-margin: .5rem;--bs-modal-color: ;--bs-modal-bg: var(--bs-body-bg);--bs-modal-border-color: var(--bs-border-color-translucent);--bs-modal-border-width: var(--bs-border-width);--bs-modal-border-radius: var(--bs-border-radius-lg);--bs-modal-box-shadow: 0 0.125rem 0.25rem rgba(0,0,0,0.075);--bs-modal-inner-border-radius: calc(var(--bs-border-radius-lg) - (var(--bs-border-width)));--bs-modal-header-padding-x: 1rem;--bs-modal-header-padding-y: 1rem;--bs-modal-header-padding: 1rem 1rem;--bs-modal-header-border-color: var(--bs-border-color);--bs-modal-header-border-width: var(--bs-border-width);--bs-modal-title-line-height: 1.5;--bs-modal-footer-gap: .5rem;--bs-modal-footer-bg: ;--bs-modal-footer-border-color: var(--bs-border-color);--bs-modal-footer-border-width: var(--bs-border-width);position:fixed;top:0;left:0;z-index:var(--bs-modal-zindex);display:none;width:100%;height:100%;overflow-x:hidden;overflow-y:auto;outline:0}.modal-dialog{position:relative;width:auto;margin:var(--bs-modal-margin);pointer-events:none}.modal.fade .modal-dialog{transition:transform 0.3s ease-out;transform:translate(0, -50px)}@media (prefers-reduced-motion: reduce){.modal.fade .modal-dialog{transition:none}}.modal.show .modal-dialog{transform:none}.modal.modal-static .modal-dialog{transform:scale(1.02)}.modal-dialog-scrollable{height:calc(100% - var(--bs-modal-margin) * 2)}.modal-dialog-scrollable .modal-content{max-height:100%;overflow:hidden}.modal-dialog-scrollable .modal-body{overflow-y:auto}.modal-dialog-centered{display:flex;display:-webkit-flex;align-items:center;-webkit-align-items:center;min-height:calc(100% - var(--bs-modal-margin) * 2)}.modal-content{position:relative;display:flex;display:-webkit-flex;flex-direction:column;-webkit-flex-direction:column;width:100%;color:var(--bs-modal-color);pointer-events:auto;background-color:var(--bs-modal-bg);background-clip:padding-box;border:var(--bs-modal-border-width) solid var(--bs-modal-border-color);border-radius:var(--bs-modal-border-radius);outline:0}.modal-backdrop{--bs-backdrop-zindex: 1050;--bs-backdrop-bg: #000;--bs-backdrop-opacity: .5;position:fixed;top:0;left:0;z-index:var(--bs-backdrop-zindex);width:100vw;height:100vh;background-color:var(--bs-backdrop-bg)}.modal-backdrop.fade{opacity:0}.modal-backdrop.show{opacity:var(--bs-backdrop-opacity)}.modal-header{display:flex;display:-webkit-flex;flex-shrink:0;-webkit-flex-shrink:0;align-items:center;-webkit-align-items:center;justify-content:space-between;-webkit-justify-content:space-between;padding:var(--bs-modal-header-padding);border-bottom:var(--bs-modal-header-border-width) solid 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var(--bs-modal-footer-border-color);border-bottom-right-radius:var(--bs-modal-inner-border-radius);border-bottom-left-radius:var(--bs-modal-inner-border-radius)}.modal-footer>*{margin:calc(var(--bs-modal-footer-gap) * .5)}@media (min-width: 576px){.modal{--bs-modal-margin: 1.75rem;--bs-modal-box-shadow: 0 0.5rem 1rem rgba(0,0,0,0.15)}.modal-dialog{max-width:var(--bs-modal-width);margin-right:auto;margin-left:auto}.modal-sm{--bs-modal-width: 300px}}@media (min-width: 992px){.modal-lg,.modal-xl{--bs-modal-width: 800px}}@media (min-width: 1200px){.modal-xl{--bs-modal-width: 1140px}}.modal-fullscreen{width:100vw;max-width:none;height:100%;margin:0}.modal-fullscreen .modal-content{height:100%;border:0;border-radius:0}.modal-fullscreen .modal-header,.modal-fullscreen .modal-footer{border-radius:0}.modal-fullscreen .modal-body{overflow-y:auto}@media (max-width: 575.98px){.modal-fullscreen-sm-down{width:100vw;max-width:none;height:100%;margin:0}.modal-fullscreen-sm-down 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span.ss{color:#20794D}pre code span.st{color:#20794D}pre code span.va{color:#111111}pre code span.vs{color:#20794D}pre code span.wa{color:#5E5E5E;font-style:italic} diff --git a/deps/data-deps.txt b/deps/data-deps.txt index 13de818..00e653d 100644 --- a/deps/data-deps.txt +++ b/deps/data-deps.txt @@ -3,6 +3,7 @@ + @@ -13,3 +14,5 @@ + + diff --git a/index.html b/index.html index 55921b4..6fa2cd1 100644 --- a/index.html +++ b/index.html @@ -12,13 +12,15 @@ - + + - + + @@ -112,31 +114,30 @@

Schedule
 ypr_tabulate_schedule(population)
 #> # A tibble: 20 × 11
-#>      Age Length Weight Fecundity Spawning NaturalMor…¹ Vulner…² Reten…³ Fishin…⁴
-#>    <int>  <dbl>  <dbl>     <dbl>    <dbl>        <dbl>    <dbl>   <dbl>    <dbl>
-#>  1     1   13.9   27.0      27.0 3.13e-56          0.2 3.13e-56     0.4 2.50e-57
-#>  2     2   25.9  174.      174.  2.91e-29          0.2 2.91e-29     0.4 2.33e-30
-#>  3     3   36.2  476.      476.  1.04e-14          0.2 1.04e-14     0.4 8.35e-16
-#>  4     4   45.1  918.      918.  3.46e- 5          0.2 3.46e- 5     0.4 2.77e- 6
-#>  5     5   52.8 1469.     1469.  9.95e- 1          0.2 9.95e- 1     0.4 7.96e- 2
-#>  6     6   59.3 2090.     2090.  1.00e+ 0          0.2 1.00e+ 0     0.4 8.00e- 2
-#>  7     7   65.0 2747.     2747.  1.00e+ 0          0.2 1.00e+ 0     0.4 8.00e- 2
-#>  8     8   69.9 3412.     3412.  1.00e+ 0          0.2 1.00e+ 0     0.4 8.00e- 2
-#>  9     9   74.1 4065.     4065.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 10    10   77.7 4689.     4689.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 11    11   80.8 5274.     5274.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 12    12   83.5 5816.     5816.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 13    13   85.8 6310.     6310.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 14    14   87.8 6758.     6758.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 15    15   89.5 7160.     7160.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 16    16   90.9 7518.     7518.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 17    17   92.2 7836.     7836.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 18    18   93.3 8116.     8116.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 19    19   94.2 8363.     8363.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> 20    20   95.0 8580.     8580.  1   e+ 0          0.2 1   e+ 0     0.4 8   e- 2
-#> # … with 2 more variables: Survivorship <dbl>, FishedSurvivorship <dbl>, and
-#> #   abbreviated variable names ¹​NaturalMortality, ²​Vulnerability, ³​Retention,
-#> #   ⁴​FishingMortality

+#> Age Length Weight Fecundity Spawning NaturalMortality Vulnerability +#> <int> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> +#> 1 1 13.9 27.0 27.0 3.13e-56 0.2 3.13e-56 +#> 2 2 25.9 174. 174. 2.91e-29 0.2 2.91e-29 +#> 3 3 36.2 476. 476. 1.04e-14 0.2 1.04e-14 +#> 4 4 45.1 918. 918. 3.46e- 5 0.2 3.46e- 5 +#> 5 5 52.8 1469. 1469. 9.95e- 1 0.2 9.95e- 1 +#> 6 6 59.3 2090. 2090. 1.00e+ 0 0.2 1.00e+ 0 +#> 7 7 65.0 2747. 2747. 1.00e+ 0 0.2 1.00e+ 0 +#> 8 8 69.9 3412. 3412. 1.00e+ 0 0.2 1.00e+ 0 +#> 9 9 74.1 4065. 4065. 1 e+ 0 0.2 1 e+ 0 +#> 10 10 77.7 4689. 4689. 1 e+ 0 0.2 1 e+ 0 +#> 11 11 80.8 5274. 5274. 1 e+ 0 0.2 1 e+ 0 +#> 12 12 83.5 5816. 5816. 1 e+ 0 0.2 1 e+ 0 +#> 13 13 85.8 6310. 6310. 1 e+ 0 0.2 1 e+ 0 +#> 14 14 87.8 6758. 6758. 1 e+ 0 0.2 1 e+ 0 +#> 15 15 89.5 7160. 7160. 1 e+ 0 0.2 1 e+ 0 +#> 16 16 90.9 7518. 7518. 1 e+ 0 0.2 1 e+ 0 +#> 17 17 92.2 7836. 7836. 1 e+ 0 0.2 1 e+ 0 +#> 18 18 93.3 8116. 8116. 1 e+ 0 0.2 1 e+ 0 +#> 19 19 94.2 8363. 8363. 1 e+ 0 0.2 1 e+ 0 +#> 20 20 95.0 8580. 8580. 1 e+ 0 0.2 1 e+ 0 +#> # ℹ 4 more variables: Retention <dbl>, FishingMortality <dbl>, +#> # Survivorship <dbl>, FishedSurvivorship <dbl>

Fish @@ -145,29 +146,29 @@

Fish ypr_plot_fish(population, color = "white") ypr_tabulate_fish(population) #> # A tibble: 20 × 8 -#> Age Survivors Spawners Caught Harvested Released HandlingMortal…¹ Ecotype -#> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <chr> -#> 1 1 70.1 2.19e-54 4.39e-55 1.76e-55 2.63e-55 0 <NA> -#> 2 2 56.1 1.63e-27 3.26e-28 1.30e-28 1.96e-28 0 <NA> -#> 3 3 44.9 4.68e-13 9.36e-14 3.74e-14 5.62e-14 0 <NA> -#> 4 4 35.9 1.24e- 3 2.48e- 4 9.93e- 5 1.49e- 4 0 <NA> -#> 5 5 28.7 2.86e+ 1 5.72e+ 0 2.29e+ 0 3.43e+ 0 0 <NA> -#> 6 6 21.1 2.11e+ 1 4.23e+ 0 1.69e+ 0 2.54e+ 0 0 <NA> -#> 7 7 15.6 1.56e+ 1 3.11e+ 0 1.24e+ 0 1.87e+ 0 0 <NA> -#> 8 8 11.5 1.15e+ 1 2.29e+ 0 9.16e- 1 1.37e+ 0 0 <NA> -#> 9 9 8.43 8.43e+ 0 1.69e+ 0 6.74e- 1 1.01e+ 0 0 <NA> -#> 10 10 6.20 6.20e+ 0 1.24e+ 0 4.96e- 1 7.44e- 1 0 <NA> -#> 11 11 4.57 4.57e+ 0 9.13e- 1 3.65e- 1 5.48e- 1 0 <NA> -#> 12 12 3.36 3.36e+ 0 6.72e- 1 2.69e- 1 4.03e- 1 0 <NA> -#> 13 13 2.47 2.47e+ 0 4.95e- 1 1.98e- 1 2.97e- 1 0 <NA> -#> 14 14 1.82 1.82e+ 0 3.64e- 1 1.46e- 1 2.18e- 1 0 <NA> -#> 15 15 1.34 1.34e+ 0 2.68e- 1 1.07e- 1 1.61e- 1 0 <NA> -#> 16 16 0.986 9.86e- 1 1.97e- 1 7.89e- 2 1.18e- 1 0 <NA> -#> 17 17 0.726 7.26e- 1 1.45e- 1 5.81e- 2 8.71e- 2 0 <NA> -#> 18 18 0.534 5.34e- 1 1.07e- 1 4.27e- 2 6.41e- 2 0 <NA> -#> 19 19 0.393 3.93e- 1 7.86e- 2 3.15e- 2 4.72e- 2 0 <NA> -#> 20 20 0.289 2.89e- 1 5.79e- 2 2.31e- 2 3.47e- 2 0 <NA> -#> # … with abbreviated variable name ¹​HandlingMortalities

+#> Age Survivors Spawners Caught Harvested Released HandlingMortalities +#> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> +#> 1 1 70.1 2.19e-54 4.39e-55 1.76e-55 2.63e-55 0 +#> 2 2 56.1 1.63e-27 3.26e-28 1.30e-28 1.96e-28 0 +#> 3 3 44.9 4.68e-13 9.36e-14 3.74e-14 5.62e-14 0 +#> 4 4 35.9 1.24e- 3 2.48e- 4 9.93e- 5 1.49e- 4 0 +#> 5 5 28.7 2.86e+ 1 5.72e+ 0 2.29e+ 0 3.43e+ 0 0 +#> 6 6 21.1 2.11e+ 1 4.23e+ 0 1.69e+ 0 2.54e+ 0 0 +#> 7 7 15.6 1.56e+ 1 3.11e+ 0 1.24e+ 0 1.87e+ 0 0 +#> 8 8 11.5 1.15e+ 1 2.29e+ 0 9.16e- 1 1.37e+ 0 0 +#> 9 9 8.43 8.43e+ 0 1.69e+ 0 6.74e- 1 1.01e+ 0 0 +#> 10 10 6.20 6.20e+ 0 1.24e+ 0 4.96e- 1 7.44e- 1 0 +#> 11 11 4.57 4.57e+ 0 9.13e- 1 3.65e- 1 5.48e- 1 0 +#> 12 12 3.36 3.36e+ 0 6.72e- 1 2.69e- 1 4.03e- 1 0 +#> 13 13 2.47 2.47e+ 0 4.95e- 1 1.98e- 1 2.97e- 1 0 +#> 14 14 1.82 1.82e+ 0 3.64e- 1 1.46e- 1 2.18e- 1 0 +#> 15 15 1.34 1.34e+ 0 2.68e- 1 1.07e- 1 1.61e- 1 0 +#> 16 16 0.986 9.86e- 1 1.97e- 1 7.89e- 2 1.18e- 1 0 +#> 17 17 0.726 7.26e- 1 1.45e- 1 5.81e- 2 8.71e- 2 0 +#> 18 18 0.534 5.34e- 1 1.07e- 1 4.27e- 2 6.41e- 2 0 +#> 19 19 0.393 3.93e- 1 7.86e- 2 3.15e- 2 4.72e- 2 0 +#> 20 20 0.289 2.89e- 1 5.79e- 2 2.31e- 2 3.47e- 2 0 +#> # ℹ 1 more variable: Ecotype <chr>

Stock-Recruitment @@ -206,9 +207,9 @@

InformationInteraction

To interactively explore the effects of altering individual parameters on the schedule, stock-recruitment and yield see the ypr shiny app.

-
-A screenshot of the yield from the ypr shiny app
A screenshot of the yield from the ypr shiny app
-
+
A screenshot of the yield from the ypr shiny app
@@ -231,7 +232,7 @@

Code of Conduct

References

-
+
Walters, Carl J., and Steven J. D. Martell. 2004. Fisheries Ecology and Management. Princeton, N.J: Princeton University Press.
@@ -287,7 +288,7 @@

Dev status

  • Lifecycle: stable
  • R-CMD-check
    • -
  • codecov
    • +
  • Codecov test coverage
  • License: MIT
  • CRAN status
@@ -302,7 +303,7 @@

Dev status

-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/news/index.html b/news/index.html index 60efd07..c57e166 100644 --- a/news/index.html +++ b/news/index.html @@ -1,5 +1,5 @@ -Changelog • ypr +Changelog • ypr Skip to contents @@ -179,7 +179,7 @@

ypr 0.0.1 -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/pkgdown.js b/pkgdown.js index 9757bf9..1a99c65 100644 --- a/pkgdown.js +++ b/pkgdown.js @@ -152,3 +152,11 @@ async function searchFuse(query, callback) { }); }); })(window.jQuery || window.$) + +document.addEventListener('keydown', function(event) { + // Check if the pressed key is '/' + if (event.key === '/') { + event.preventDefault(); // Prevent any default action associated with the '/' key + document.getElementById('search-input').focus(); // Set focus to the search input + } +}); diff --git a/pkgdown.yml b/pkgdown.yml index e62190b..b442bac 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,10 +1,10 @@ pandoc: 3.1.11 -pkgdown: 2.1.0 +pkgdown: 2.1.1 pkgdown_sha: ~ articles: ecotypes: ecotypes.html ypr: ypr.html -last_built: 2024-09-10T12:30Z +last_built: 2024-10-18T01:02Z urls: reference: https://poissonconsulting.github.io/ypr/reference article: https://poissonconsulting.github.io/ypr/articles diff --git a/reference/adams_bt_03-1.png b/reference/adams_bt_03-1.png index f283f7f..d442977 100644 Binary files a/reference/adams_bt_03-1.png and b/reference/adams_bt_03-1.png differ diff --git a/reference/adams_bt_03.html b/reference/adams_bt_03.html index 74892af..b7e7f46 100644 --- a/reference/adams_bt_03.html +++ b/reference/adams_bt_03.html @@ -1,5 +1,5 @@ -Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03 • yprAdams Lake Bull Trout Population Parameters (2003) — adams_bt_03 • ypr Skip to contents @@ -65,8 +65,8 @@

See also

Other data: chilliwack_bt_05, kootenay_bt_13, -kootenay_rb_13, kootenay_rb, +kootenay_rb_13, quesnel_bt, quesnel_lt, quesnel_rb

@@ -120,7 +120,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/as_ypr_ecotypes.html b/reference/as_ypr_ecotypes.html index 2b980f3..b187883 100644 --- a/reference/as_ypr_ecotypes.html +++ b/reference/as_ypr_ecotypes.html @@ -1,5 +1,5 @@ -Coerce to an Ecotypes Object — as_ypr_ecotypes • ypr +Coerce to an Ecotypes Object — as_ypr_ecotypes • ypr Skip to contents @@ -236,7 +236,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/as_ypr_population.html b/reference/as_ypr_population.html index dd725e7..c174205 100644 --- a/reference/as_ypr_population.html +++ b/reference/as_ypr_population.html @@ -1,5 +1,5 @@ -Coerce to a Population Object — as_ypr_population • ypr +Coerce to a Population Object — as_ypr_population • ypr Skip to contents @@ -269,7 +269,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/as_ypr_populations.html b/reference/as_ypr_populations.html index 55fed13..ffd9d92 100644 --- a/reference/as_ypr_populations.html +++ b/reference/as_ypr_populations.html @@ -1,5 +1,5 @@ -Coerce to a Populations Object — as_ypr_populations • ypr +Coerce to a Populations Object — as_ypr_populations • ypr Skip to contents @@ -83,11 +83,11 @@

See also

Other populations: chilliwack_bt_05, ypr_plot_yield(), -ypr_populations_expand(), ypr_populations(), +ypr_populations_expand(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

@@ -202,7 +202,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/check_ecotypes.html b/reference/check_ecotypes.html index 4f1ad69..0fdc47e 100644 --- a/reference/check_ecotypes.html +++ b/reference/check_ecotypes.html @@ -1,5 +1,5 @@ -Check Ecotypes — check_ecotypes • ypr +Check Ecotypes — check_ecotypes • ypr Skip to contents @@ -65,8 +65,8 @@

Value

See also

Other check: -check_populations(), -check_population()

+check_population(), +check_populations()

@@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/check_population.html b/reference/check_population.html index 87e2977..15390ec 100644 --- a/reference/check_population.html +++ b/reference/check_population.html @@ -1,5 +1,5 @@ -Check Population — check_population • ypr +Check Population — check_population • ypr Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/check_populations.html b/reference/check_populations.html index bfa22a9..9c602da 100644 --- a/reference/check_populations.html +++ b/reference/check_populations.html @@ -1,5 +1,5 @@ -Check Populations — check_populations • ypr +Check Populations — check_populations • ypr Skip to contents @@ -83,7 +83,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/chilliwack_bt_05.html b/reference/chilliwack_bt_05.html index 85626ba..d78b430 100644 --- a/reference/chilliwack_bt_05.html +++ b/reference/chilliwack_bt_05.html @@ -1,5 +1,5 @@ -Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05 • yprChilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05 • ypr Skip to contents @@ -63,16 +63,16 @@

See also

Other populations: as_ypr_populations(), ypr_plot_yield(), -ypr_populations_expand(), ypr_populations(), +ypr_populations_expand(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other data: adams_bt_03, kootenay_bt_13, -kootenay_rb_13, kootenay_rb, +kootenay_rb_13, quesnel_bt, quesnel_lt, quesnel_rb

@@ -144,7 +144,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/figures/README-unnamed-chunk-5-1.png b/reference/figures/README-unnamed-chunk-5-1.png index 56d13bb..6b7bf73 100644 Binary files a/reference/figures/README-unnamed-chunk-5-1.png and b/reference/figures/README-unnamed-chunk-5-1.png differ diff --git a/reference/figures/README-unnamed-chunk-6-1.png b/reference/figures/README-unnamed-chunk-6-1.png index aad8ce3..4d9be4d 100644 Binary files a/reference/figures/README-unnamed-chunk-6-1.png and b/reference/figures/README-unnamed-chunk-6-1.png differ diff --git a/reference/index.html b/reference/index.html index 031f2c0..d85ac2a 100644 --- a/reference/index.html +++ b/reference/index.html @@ -1,5 +1,5 @@ -Package index • ypr +Package index • ypr Skip to contents @@ -393,7 +393,7 @@

Check

-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/is.ypr_population.html b/reference/is.ypr_population.html index 2b29be3..b58f299 100644 --- a/reference/is.ypr_population.html +++ b/reference/is.ypr_population.html @@ -1,5 +1,5 @@ -Tests if is a Population, Populations or Ecotypes — is.ypr_population • ypr +Tests if is a Population, Populations or Ecotypes — is.ypr_population • ypr Skip to contents @@ -99,7 +99,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/kootenay_bt_13-1.png b/reference/kootenay_bt_13-1.png index 089771b..663b9d5 100644 Binary files a/reference/kootenay_bt_13-1.png and b/reference/kootenay_bt_13-1.png differ diff --git a/reference/kootenay_bt_13.html b/reference/kootenay_bt_13.html index c274436..f5bb329 100644 --- a/reference/kootenay_bt_13.html +++ b/reference/kootenay_bt_13.html @@ -1,5 +1,5 @@ -Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13 • yprKootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13 • ypr Skip to contents @@ -70,8 +70,8 @@

See also

Other data: adams_bt_03, chilliwack_bt_05, -kootenay_rb_13, kootenay_rb, +kootenay_rb_13, quesnel_bt, quesnel_lt, quesnel_rb

@@ -125,7 +125,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/kootenay_rb-1.png b/reference/kootenay_rb-1.png index 0e60260..eeb13f0 100644 Binary files a/reference/kootenay_rb-1.png and b/reference/kootenay_rb-1.png differ diff --git a/reference/kootenay_rb.html b/reference/kootenay_rb.html index b2e293c..646abe9 100644 --- a/reference/kootenay_rb.html +++ b/reference/kootenay_rb.html @@ -1,5 +1,5 @@ -Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb • ypr +Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb • ypr Skip to contents @@ -120,7 +120,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/kootenay_rb_13-1.png b/reference/kootenay_rb_13-1.png index 02e4fd3..204f2ad 100644 Binary files a/reference/kootenay_rb_13-1.png and b/reference/kootenay_rb_13-1.png differ diff --git a/reference/kootenay_rb_13.html b/reference/kootenay_rb_13.html index 778d69c..d5f1b98 100644 --- a/reference/kootenay_rb_13.html +++ b/reference/kootenay_rb_13.html @@ -1,5 +1,5 @@ -Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13 • yprKootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13 • ypr Skip to contents @@ -125,7 +125,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/params.html b/reference/params.html index 33c59b0..65ee41b 100644 --- a/reference/params.html +++ b/reference/params.html @@ -1,5 +1,5 @@ -Parameter Descriptions for ypr Functions — params • ypr +Parameter Descriptions for ypr Functions — params • ypr Skip to contents @@ -300,7 +300,7 @@

Arguments -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/plot.ypr_population.html b/reference/plot.ypr_population.html index 8233adc..15a5bea 100644 --- a/reference/plot.ypr_population.html +++ b/reference/plot.ypr_population.html @@ -1,5 +1,5 @@ -Plot Population Schedule — plot.ypr_population • ypr +Plot Population Schedule — plot.ypr_population • ypr Skip to contents @@ -89,7 +89,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/quesnel_bt-1.png b/reference/quesnel_bt-1.png index 24b093a..3589936 100644 Binary files a/reference/quesnel_bt-1.png and b/reference/quesnel_bt-1.png differ diff --git a/reference/quesnel_bt.html b/reference/quesnel_bt.html index 2b09d0f..5cafaea 100644 --- a/reference/quesnel_bt.html +++ b/reference/quesnel_bt.html @@ -1,5 +1,5 @@ -Quesnel Lake Bull Trout Population Parameters — quesnel_bt • ypr +Quesnel Lake Bull Trout Population Parameters — quesnel_bt • ypr Skip to contents @@ -60,8 +60,8 @@

See alsoadams_bt_03, chilliwack_bt_05, kootenay_bt_13, -kootenay_rb_13, kootenay_rb, +kootenay_rb_13, quesnel_lt, quesnel_rb

@@ -114,7 +114,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/quesnel_lt-1.png b/reference/quesnel_lt-1.png index f4e42c3..95b79c3 100644 Binary files a/reference/quesnel_lt-1.png and b/reference/quesnel_lt-1.png differ diff --git a/reference/quesnel_lt.html b/reference/quesnel_lt.html index f917c2d..6b1b266 100644 --- a/reference/quesnel_lt.html +++ b/reference/quesnel_lt.html @@ -1,5 +1,5 @@ -Quesnel Lake Lake Trout Population Parameters — quesnel_lt • ypr +Quesnel Lake Lake Trout Population Parameters — quesnel_lt • ypr Skip to contents @@ -60,8 +60,8 @@

See alsoadams_bt_03, chilliwack_bt_05, kootenay_bt_13, -kootenay_rb_13, kootenay_rb, +kootenay_rb_13, quesnel_bt, quesnel_rb

@@ -114,7 +114,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/quesnel_rb-1.png b/reference/quesnel_rb-1.png index cb4cceb..11a53fa 100644 Binary files a/reference/quesnel_rb-1.png and b/reference/quesnel_rb-1.png differ diff --git a/reference/quesnel_rb.html b/reference/quesnel_rb.html index d212563..e212591 100644 --- a/reference/quesnel_rb.html +++ b/reference/quesnel_rb.html @@ -1,5 +1,5 @@ -Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb • ypr +Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb • ypr Skip to contents @@ -60,8 +60,8 @@

See alsoadams_bt_03, chilliwack_bt_05, kootenay_bt_13, -kootenay_rb_13, kootenay_rb, +kootenay_rb_13, quesnel_bt, quesnel_lt

@@ -114,7 +114,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/reexports.html b/reference/reexports.html index 76a6fb8..f7bd3ee 100644 --- a/reference/reexports.html +++ b/reference/reexports.html @@ -1,5 +1,5 @@ -Objects exported from other packages — reexports • yprObjects exported from other packages — reexports • ypr -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr-package.html b/reference/ypr-package.html index 81f1de6..db525f5 100644 --- a/reference/ypr-package.html +++ b/reference/ypr-package.html @@ -1,5 +1,5 @@ -ypr: Yield Per Recruit — ypr-package • yprypr: Yield Per Recruit — ypr-package • ypr Skip to contents @@ -47,7 +47,8 @@

See also

-

Useful links:

@@ -67,7 +68,7 @@

Author<

-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_age_at_length.html b/reference/ypr_age_at_length.html index 7eedf2b..ca71c46 100644 --- a/reference/ypr_age_at_length.html +++ b/reference/ypr_age_at_length.html @@ -1,5 +1,5 @@ -Age At Length — ypr_age_at_length • ypr +Age At Length — ypr_age_at_length • ypr Skip to contents @@ -68,8 +68,8 @@

See alsoypr_exploitation(), ypr_length_at_age(), ypr_optimize(), -ypr_yields(), -ypr_yield()

+ypr_yield(), +ypr_yields()

@@ -88,7 +88,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_detabulate_parameters.html b/reference/ypr_detabulate_parameters.html index 03d6f74..7d63b94 100644 --- a/reference/ypr_detabulate_parameters.html +++ b/reference/ypr_detabulate_parameters.html @@ -1,5 +1,5 @@ -Detabulate Population Parameters — ypr_detabulate_parameters • ypr +Detabulate Population Parameters — ypr_detabulate_parameters • ypr Skip to contents @@ -68,8 +68,8 @@

See alsoypr_tabulate_parameters(), ypr_tabulate_schedule(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other parameters: ypr_tabulate_parameters()

@@ -120,7 +120,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_ecotypes.html b/reference/ypr_ecotypes.html index 0f69c6e..95b31e6 100644 --- a/reference/ypr_ecotypes.html +++ b/reference/ypr_ecotypes.html @@ -1,5 +1,5 @@ -Create Ecotypes Object — ypr_ecotypes • ypr +Create Ecotypes Object — ypr_ecotypes • ypr Skip to contents @@ -149,7 +149,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_exploitation.html b/reference/ypr_exploitation.html index b9239c1..075dfb1 100644 --- a/reference/ypr_exploitation.html +++ b/reference/ypr_exploitation.html @@ -1,5 +1,5 @@ -Exploitation Probability — ypr_exploitation • yprExploitation Probability — ypr_exploitation • yprSee alsoypr_age_at_length(), ypr_length_at_age(), ypr_optimize(), -ypr_yields(), -ypr_yield()

+ypr_yield(), +ypr_yields()

@@ -104,7 +104,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_get_par.html b/reference/ypr_get_par.html index 11ff94a..7fd6f43 100644 --- a/reference/ypr_get_par.html +++ b/reference/ypr_get_par.html @@ -1,5 +1,5 @@ -Get Parameter Value — ypr_get_par • ypr +Get Parameter Value — ypr_get_par • ypr Skip to contents @@ -78,7 +78,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_length_at_age.html b/reference/ypr_length_at_age.html index fe585fd..bd42677 100644 --- a/reference/ypr_length_at_age.html +++ b/reference/ypr_length_at_age.html @@ -1,5 +1,5 @@ -Length At Age — ypr_length_at_age • ypr +Length At Age — ypr_length_at_age • ypr Skip to contents @@ -68,8 +68,8 @@

See alsoypr_age_at_length(), ypr_exploitation(), ypr_optimize(), -ypr_yields(), -ypr_yield()

+ypr_yield(), +ypr_yields()

@@ -88,7 +88,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_names.html b/reference/ypr_names.html index e5c73de..d845d3e 100644 --- a/reference/ypr_names.html +++ b/reference/ypr_names.html @@ -1,5 +1,5 @@ -Population(s) or Ecotype Names — ypr_names • ypr +Population(s) or Ecotype Names — ypr_names • ypr Skip to contents @@ -103,7 +103,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_optimize.html b/reference/ypr_optimize.html index 41b3071..fa859b0 100644 --- a/reference/ypr_optimize.html +++ b/reference/ypr_optimize.html @@ -1,5 +1,5 @@ -Optimize Capture — ypr_optimize • yprOptimize Capture — ypr_optimize • ypr Skip to contents @@ -83,8 +83,8 @@

See alsoypr_age_at_length(), ypr_exploitation(), ypr_length_at_age(), -ypr_yields(), -ypr_yield()

+ypr_yield(), +ypr_yields()

@@ -102,7 +102,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_plot_biomass-1.png b/reference/ypr_plot_biomass-1.png index 2d8ee63..2503205 100644 Binary files a/reference/ypr_plot_biomass-1.png and b/reference/ypr_plot_biomass-1.png differ diff --git a/reference/ypr_plot_biomass.html b/reference/ypr_plot_biomass.html index 5911334..86cd7e3 100644 --- a/reference/ypr_plot_biomass.html +++ b/reference/ypr_plot_biomass.html @@ -1,5 +1,5 @@ -Plot Biomass — ypr_plot_biomass • yprPlot Biomass — ypr_plot_biomass • ypr Skip to contents @@ -96,7 +96,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_plot_fish.html b/reference/ypr_plot_fish.html index abe6ef3..d902968 100644 --- a/reference/ypr_plot_fish.html +++ b/reference/ypr_plot_fish.html @@ -1,5 +1,5 @@ -Plot Fish — ypr_plot_fish • yprPlot Fish — ypr_plot_fish • yprExamples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_plot_schedule-1.png b/reference/ypr_plot_schedule-1.png index a55190b..8aa3d6f 100644 Binary files a/reference/ypr_plot_schedule-1.png and b/reference/ypr_plot_schedule-1.png differ diff --git a/reference/ypr_plot_schedule.html b/reference/ypr_plot_schedule.html index 840b115..542a5e9 100644 --- a/reference/ypr_plot_schedule.html +++ b/reference/ypr_plot_schedule.html @@ -1,5 +1,5 @@ -Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule • ypr +Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule • ypr Skip to contents @@ -92,7 +92,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_plot_sr-1.png b/reference/ypr_plot_sr-1.png index eb061b0..afbc8e9 100644 Binary files a/reference/ypr_plot_sr-1.png and b/reference/ypr_plot_sr-1.png differ diff --git a/reference/ypr_plot_sr-2.png b/reference/ypr_plot_sr-2.png index 5683cb1..0f7cdce 100644 Binary files a/reference/ypr_plot_sr-2.png and b/reference/ypr_plot_sr-2.png differ diff --git a/reference/ypr_plot_sr.html b/reference/ypr_plot_sr.html index 04c43dd..26938a2 100644 --- a/reference/ypr_plot_sr.html +++ b/reference/ypr_plot_sr.html @@ -1,5 +1,5 @@ -Plot Stock-Recruitment Curve — ypr_plot_sr • ypr +Plot Stock-Recruitment Curve — ypr_plot_sr • ypr Skip to contents @@ -113,7 +113,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_plot_yield-1.png b/reference/ypr_plot_yield-1.png index 8a9cbb8..633b8e7 100644 Binary files a/reference/ypr_plot_yield-1.png and b/reference/ypr_plot_yield-1.png differ diff --git a/reference/ypr_plot_yield.html b/reference/ypr_plot_yield.html index b48b41a..1f55cf4 100644 --- a/reference/ypr_plot_yield.html +++ b/reference/ypr_plot_yield.html @@ -1,5 +1,5 @@ -Plot Yield by Capture — ypr_plot_yield • yprPlot Yield by Capture — ypr_plot_yield • ypr Skip to contents @@ -135,15 +135,15 @@

See also

Other populations: as_ypr_populations(), chilliwack_bt_05, -ypr_populations_expand(), ypr_populations(), +ypr_populations_expand(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other yield: ypr_tabulate_yield(), -ypr_yields(), -ypr_yield()

+ypr_yield(), +ypr_yields()

Other plot: ypr_plot_biomass(), ypr_plot_fish(), @@ -154,14 +154,15 @@

See also

Examples

if (FALSE) { # \dontrun{
-ypr_plot_yield(ypr_populations(
-  Rk = c(2.5, 4.6),
-  Llo = c(0, 60)
-),
-plot_values = FALSE
+ypr_plot_yield(
+  ypr_populations(
+    Rk = c(2.5, 4.6),
+    Llo = c(0, 60)
+  ),
+  plot_values = FALSE
 ) +
   ggplot2::facet_wrap(~Llo) +
-  ggplot2::aes_string(group = "Rk", color = "Rk") +
+  ggplot2::aes(group = Rk, color = Rk) +
   ggplot2::scale_color_manual(values = c("black", "blue"))
 
 ypr_plot_yield(ypr_populations(Rk = c(2.5, 4.6), Llo = c(0, 60))) +
@@ -181,7 +182,7 @@ 
Examples
-  
Site built with pkgdown 2.1.0.

+  
Site built with pkgdown 2.1.1.
diff --git a/reference/ypr_population.html b/reference/ypr_population.html index 825def4..d2773ff 100644 --- a/reference/ypr_population.html +++ b/reference/ypr_population.html @@ -1,5 +1,5 @@ -Population Parameters — ypr_population • ypr +Population Parameters — ypr_population • ypr Skip to contents @@ -266,7 +266,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_population_names.html b/reference/ypr_population_names.html index d99e465..37f0f43 100644 --- a/reference/ypr_population_names.html +++ b/reference/ypr_population_names.html @@ -1,5 +1,5 @@ -Population Names — ypr_population_names • yprPopulation Names — ypr_population_names • ypr Skip to contents @@ -75,7 +75,7 @@

See also
-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_population_update.html b/reference/ypr_population_update.html index b95f0d5..869b6e1 100644 --- a/reference/ypr_population_update.html +++ b/reference/ypr_population_update.html @@ -1,5 +1,5 @@ -Update a Population Object — ypr_population_update • ypr +Update a Population Object — ypr_population_update • ypr Skip to contents @@ -68,7 +68,7 @@

Arguments -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_populations.html b/reference/ypr_populations.html index cccb6a7..7fc3a72 100644 --- a/reference/ypr_populations.html +++ b/reference/ypr_populations.html @@ -1,5 +1,5 @@ -Populations — ypr_populations • ypr +Populations — ypr_populations • ypr Skip to contents @@ -74,8 +74,8 @@

See alsoypr_plot_yield(), ypr_populations_expand(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

@@ -124,7 +124,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_populations_expand.html b/reference/ypr_populations_expand.html index 1198db1..c9b2934 100644 --- a/reference/ypr_populations_expand.html +++ b/reference/ypr_populations_expand.html @@ -1,5 +1,5 @@ -Expand Populations — ypr_populations_expand • yprExpand Populations — ypr_populations_expand • ypr Skip to contents @@ -69,8 +69,8 @@

See alsoypr_plot_yield(), ypr_populations(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

@@ -124,7 +124,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_report.html b/reference/ypr_report.html index 1de3765..6b60a40 100644 --- a/reference/ypr_report.html +++ b/reference/ypr_report.html @@ -1,5 +1,5 @@ -Report — ypr_report • ypr +Report — ypr_report • ypr Skip to contents @@ -119,8 +119,8 @@

See alsoypr_tabulate_parameters(), ypr_tabulate_schedule(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

@@ -139,7 +139,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_schedule.html b/reference/ypr_schedule.html index 1fdcf79..cabd5b7 100644 --- a/reference/ypr_schedule.html +++ b/reference/ypr_schedule.html @@ -1,5 +1,5 @@ -Life-History Schedule — ypr_schedule • yprLife-History Schedule — ypr_schedule • ypr Skip to contents @@ -63,7 +63,7 @@

Details
-

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_sr.html b/reference/ypr_sr.html index 2b17e46..9e3545d 100644 --- a/reference/ypr_sr.html +++ b/reference/ypr_sr.html @@ -1,5 +1,5 @@ -Stock-Recruitment Parameters — ypr_sr • yprStock-Recruitment Parameters — ypr_sr • yprExamples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_biomass.html b/reference/ypr_tabulate_biomass.html index 8c4b3e3..8b0646d 100644 --- a/reference/ypr_tabulate_biomass.html +++ b/reference/ypr_tabulate_biomass.html @@ -1,5 +1,5 @@ -Tabulate Biomass (and Eggs) — ypr_tabulate_biomass • yprTabulate Biomass (and Eggs) — ypr_tabulate_biomass • ypr Skip to contents @@ -70,8 +70,8 @@

See alsoypr_tabulate_parameters(), ypr_tabulate_schedule(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other biomass: ypr_plot_biomass()

@@ -113,7 +113,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_fish.html b/reference/ypr_tabulate_fish.html index 9312c19..039060f 100644 --- a/reference/ypr_tabulate_fish.html +++ b/reference/ypr_tabulate_fish.html @@ -1,5 +1,5 @@ -Tabulate Fish Numbers — ypr_tabulate_fish • yprTabulate Fish Numbers — ypr_tabulate_fish • yprSee alsoypr_tabulate_parameters(), ypr_tabulate_schedule(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other fish: ypr_plot_fish()

@@ -125,7 +125,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_parameters.html b/reference/ypr_tabulate_parameters.html index 28326be..a2a92f3 100644 --- a/reference/ypr_tabulate_parameters.html +++ b/reference/ypr_tabulate_parameters.html @@ -1,5 +1,5 @@ -Tabulate Population Parameters — ypr_tabulate_parameters • ypr +Tabulate Population Parameters — ypr_tabulate_parameters • ypr Skip to contents @@ -67,8 +67,8 @@

See alsoypr_tabulate_fish(), ypr_tabulate_schedule(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other parameters: ypr_detabulate_parameters()

@@ -101,7 +101,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_schedule.html b/reference/ypr_tabulate_schedule.html index 9a06b87..ade7470 100644 --- a/reference/ypr_tabulate_schedule.html +++ b/reference/ypr_tabulate_schedule.html @@ -1,5 +1,5 @@ -Life-History Schedule — ypr_tabulate_schedule • ypr +Life-History Schedule — ypr_tabulate_schedule • ypr Skip to contents @@ -83,8 +83,8 @@

See alsoypr_tabulate_fish(), ypr_tabulate_parameters(), ypr_tabulate_sr(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other schedule: ypr_plot_schedule()

@@ -146,7 +146,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_sr.html b/reference/ypr_tabulate_sr.html index 0354fc3..2f71fac 100644 --- a/reference/ypr_tabulate_sr.html +++ b/reference/ypr_tabulate_sr.html @@ -1,5 +1,5 @@ -Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr • ypr +Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr • ypr Skip to contents @@ -116,16 +116,16 @@

See alsoypr_tabulate_fish(), ypr_tabulate_parameters(), ypr_tabulate_schedule(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_tabulate_yield(), +ypr_tabulate_yields()

Other populations: as_ypr_populations(), chilliwack_bt_05, ypr_plot_yield(), -ypr_populations_expand(), ypr_populations(), -ypr_tabulate_yields(), -ypr_tabulate_yield()

+ypr_populations_expand(), +ypr_tabulate_yield(), +ypr_tabulate_yields()

Other sr: ypr_plot_sr(), ypr_sr()

@@ -168,7 +168,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_yield.html b/reference/ypr_tabulate_yield.html index 108699e..97d75f3 100644 --- a/reference/ypr_tabulate_yield.html +++ b/reference/ypr_tabulate_yield.html @@ -1,5 +1,5 @@ -Tabulate Yield — ypr_tabulate_yield • ypr +Tabulate Yield — ypr_tabulate_yield • ypr Skip to contents @@ -129,14 +129,14 @@

See alsoas_ypr_populations(), chilliwack_bt_05, ypr_plot_yield(), -ypr_populations_expand(), ypr_populations(), +ypr_populations_expand(), ypr_tabulate_sr(), ypr_tabulate_yields()

Other yield: ypr_plot_yield(), -ypr_yields(), -ypr_yield()

+ypr_yield(), +ypr_yields()

@@ -166,7 +166,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_tabulate_yields.html b/reference/ypr_tabulate_yields.html index 4ab72f0..8774d49 100644 --- a/reference/ypr_tabulate_yields.html +++ b/reference/ypr_tabulate_yields.html @@ -1,5 +1,5 @@ -Tabulate Yields — ypr_tabulate_yields • ypr +Tabulate Yields — ypr_tabulate_yields • ypr Skip to contents @@ -128,8 +128,8 @@

See alsoas_ypr_populations(), chilliwack_bt_05, ypr_plot_yield(), -ypr_populations_expand(), ypr_populations(), +ypr_populations_expand(), ypr_tabulate_sr(), ypr_tabulate_yield()

@@ -206,7 +206,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_update.html b/reference/ypr_update.html index 96b3468..39a6c09 100644 --- a/reference/ypr_update.html +++ b/reference/ypr_update.html @@ -1,5 +1,5 @@ -Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update • yprUpdate a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update • ypr Skip to contents @@ -191,7 +191,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_yield.html b/reference/ypr_yield.html index 47c3424..f1c9613 100644 --- a/reference/ypr_yield.html +++ b/reference/ypr_yield.html @@ -1,5 +1,5 @@ -Yield — ypr_yield • ypr +Yield — ypr_yield • ypr Skip to contents @@ -130,7 +130,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/reference/ypr_yields.html b/reference/ypr_yields.html index 4c2287e..0c219a8 100644 --- a/reference/ypr_yields.html +++ b/reference/ypr_yields.html @@ -1,5 +1,5 @@ -Yields — ypr_yields • ypr +Yields — ypr_yields • ypr Skip to contents @@ -113,7 +113,7 @@

Examples -

Site built with pkgdown 2.1.0.

+

Site built with pkgdown 2.1.1.

diff --git a/search.json b/search.json index 0c7658e..bd4cf56 100644 --- a/search.json +++ b/search.json @@ -1 +1 @@ -[{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.0, available https://www.contributor-covenant.org/version/2/0/ code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https:// www.contributor-covenant.org/translations.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contributing to ypr","title":"Contributing to ypr","text":"outlines propose change ypr.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"fixing-typos","dir":"","previous_headings":"","what":"Fixing typos","title":"Contributing to ypr","text":"can fix typos, spelling mistakes, grammatical errors documentation directly using GitHub web interface, long changes made source file. generally means ’ll need edit roxygen2 comments .R, .Rd file. can find .R file generates .Rd reading comment first line.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"bigger-changes","dir":"","previous_headings":"","what":"Bigger changes","title":"Contributing to ypr","text":"want make bigger change, ’s good idea first file issue make sure someone team agrees ’s needed. ’ve found bug, please file issue illustrates bug minimal reprex (also help write unit test, needed).","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"pull-request-process","dir":"","previous_headings":"Bigger changes","what":"Pull request process","title":"Contributing to ypr","text":"Fork package clone onto computer. haven’t done , recommend using usethis::create_from_github(\"\", fork = TRUE). Install development dependences devtools::install_dev_deps(), make sure package passes R CMD check running devtools::check(). R CMD check doesn’t pass cleanly, ’s good idea ask help continuing. Create Git branch pull request (PR). recommend using usethis::pr_init(\"brief-description--change\"). Make changes, commit git, create PR running usethis::pr_push(), following prompts browser. title PR briefly describe change. body PR contain Fixes #issue-number. Begin commit merge messages - indicate user facing changes included NEWS.md. use fledge automatically generate NEWS.md file.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"code-style","dir":"","previous_headings":"Bigger changes","what":"Code style","title":"Contributing to ypr","text":"New code follow tidyverse style guide. can use styler package apply styles, please don’t restyle code nothing PR. use roxygen2, Markdown syntax, documentation. use testthat unit tests. Contributions test cases included easier accept.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contributing to ypr","text":"Please note ypr project released Contributor Code Conduct. contributing project agree abide terms.","code":""},{"path":"https://poissonconsulting.github.io/ypr/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2020 Poisson Consulting Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://poissonconsulting.github.io/ypr/SUPPORT.html","id":null,"dir":"","previous_headings":"","what":"Getting help with ypr","title":"Getting help with ypr","text":"Thanks using ypr! filing issue, places explore pieces put together make process smooth possible.","code":""},{"path":"https://poissonconsulting.github.io/ypr/SUPPORT.html","id":"make-sure-its-new","dir":"","previous_headings":"","what":"Make sure its new","title":"Getting help with ypr","text":"opening new issue, sure search issues pull requests make sure bug hasn’t reported /already fixed development version. default, search pre-populated :issue :open. can edit qualifiers (e.g. :pr, :closed) needed. example, ’d simply remove :open search issues repo, open closed.","code":""},{"path":"https://poissonconsulting.github.io/ypr/SUPPORT.html","id":"make-a-reprex","dir":"","previous_headings":"","what":"Make a reprex","title":"Getting help with ypr","text":"Start making minimal reproducible example using reprex package. haven’t heard used reprex , ’re treat! Seriously, reprex make R-question-asking endeavors easier (pretty insane ROI five ten minutes ’ll take learn ’s ). additional reprex pointers, check Get help! section tidyverse site.","code":""},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"ecotypes","dir":"Articles","previous_headings":"","what":"Ecotypes","title":"Ecotypes","text":"ypr package population considered group interbreeding fish indistinguishable anglers. Ecotypes groups individuals population different life-history strategies. Consequently, ecotypes must share key fishery (pi, Llo, Lup, Nc, rho, Hm q) stock recruitment (BH, RK, tR Rmax) parameters.y use yield-per-recruit approach also necessary assume relative proportion recruits (RPR) adopting life-history strategy independent size composition parental stock.","code":""},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"two-ecotypes","dir":"Articles","previous_headings":"","what":"Two Ecotypes","title":"Ecotypes","text":"Consider population smaller ecotype second larger ecotype delays maturation order achieve sufficient size switch piscivory allows grow much larger.","code":"library(ypr) library(ggplot2) # for plotting ecotypes <- ypr_ecotypes( Linf2 = 200, L2 = c(100, 50), Ls = c(50, 75), pi = 0.05, names = c(\"small\", \"large\"), RPR = c(0.8, 0.2)) ypr_plot_schedule(ecotypes) + scale_color_manual(values = c(\"black\", \"blue\")) ypr_plot_schedule(ecotypes, x = \"Age\", y = \"Spawning\") + scale_color_manual(values = c(\"black\", \"blue\"))"},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"fish","dir":"Articles","previous_headings":"Two Ecotypes","what":"Fish","title":"Ecotypes","text":"","code":"ypr_plot_fish(ecotypes, color = \"white\") + scale_fill_manual(values = c(\"black\", \"blue\")) ypr_plot_fish(ecotypes, x = \"Length\", y = \"Caught\", color = \"white\", binwidth = 15) + scale_fill_manual(values = c(\"black\", \"blue\"))"},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"stock-recruitment","dir":"Articles","previous_headings":"Two Ecotypes","what":"Stock-Recruitment","title":"Ecotypes","text":"","code":"ypr_plot_sr(ecotypes, biomass = TRUE) ypr_tabulate_sr(ecotypes, biomass = TRUE) #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 4085. 0.667 1.27 6431. #> 2 actual 0.05 0.05 2483. 0.549 0.879 5653. #> 3 optimal 0.0833 0.0833 1705. 0.455 0.656 5200."},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"yield","dir":"Articles","previous_headings":"Two Ecotypes","what":"Yield","title":"Ecotypes","text":"","code":"ypr_tabulate_yield(ecotypes, biomass = TRUE) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.05 0.05 0.253 7.97 73.6 5474. 0.487 #> 2 optimal 0.0833 0.0833 0.290 7.64 71.9 5026. 0.825 ypr_plot_yield(ecotypes, biomass = TRUE)"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"introduction","dir":"Articles","previous_headings":"","what":"Introduction","title":"Get Started with ypr","text":"Fish born, grow, reproduce die – whether natural causes fishing. ’s . Modelers just use complicated (complicated) math iron details. Cooper (2006) Equilibrium based yield per recruit (YPR) methods (Walters Martell 2004) estimate capture rate optimizes yield assumption stochasticity density-dependence captured stock-recruitment relationship. remaining population processes growth, reproduction death captured series relatively straight-forward deterministic equations. Table 1. 32 parameters default values descriptions.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"length","dir":"Articles","previous_headings":"Growth","what":"Length","title":"Get Started with ypr","text":"ypr length (cm) age (tt) assumed follow Von Bertalanffy growth curve L=L∞⋅(1−exp(−k⋅(t−t0)))L = L_{\\infty} \\cdot (1 - \\exp(-k \\cdot (t-t_0))) can biphasic","code":"population <- ypr_population() ypr_plot_schedule(population, \"Age\", \"Length\") ypr_plot_schedule(ypr_population_update(population, L2 = 75, Linf2 = 200), \"Age\", \"Length\") #> Warning: `ypr_population_update()` was deprecated in ypr 0.5.3. #> ℹ Please use `ypr_update()` instead. #> This warning is displayed once every 8 hours. #> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was #> generated."},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"weight","dir":"Articles","previous_headings":"Growth","what":"Weight","title":"Get Started with ypr","text":"weight (WW) given length assumed follow classic allometric relationship W=wα⋅LwβW = w_\\alpha \\cdot L^{w_\\beta} worth noting wαw_\\alpha, extrapolated weight (g) 1 cm individual, scaling constant affects estimate yield (calculated terms biomass), ie, affect estimate optimal capture rate.","code":"population <- ypr_population_update(population, Wa = 0.01, Wb = 3) ypr_plot_schedule(population, \"Length\", \"Weight\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"fecundity","dir":"Articles","previous_headings":"Reproduction","what":"Fecundity","title":"Get Started with ypr","text":"fecundity (FF) assumed scale allometrically weight according equation F=fα⋅WfβF = f_\\alpha \\cdot W^{f_\\beta} fαf_\\alpha, extrapolated eggs produced 1 g female, scaling constant effect yield optimal capture rate.","code":"population <- ypr_population_update(population, fa = 1, fb = 1) ypr_plot_schedule(population, \"Weight\", \"Fecundity\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"spawning","dir":"Articles","previous_headings":"Reproduction","what":"Spawning","title":"Get Started with ypr","text":"probability spawning length LL determined equation S=LSpLsSp+LSp⋅esS = \\frac{L^{S_p}}{L_s^{S_p} + L^{S_p}} \\cdot es","code":"population <- ypr_population_update(population, Ls = 50, Sp = 10, es = 0.8) ypr_plot_schedule(population, \"Length\", \"Spawning\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"natural-mortality","dir":"Articles","previous_headings":"Death","what":"Natural Mortality","title":"Get Started with ypr","text":"default natural annual interval mortality rate (nn) assumed constant although like growth can vary biphasically natural mortality rate can also affected spawning mortality","code":"ypr_plot_schedule(population, \"Length\", \"NaturalMortality\") ypr_plot_schedule(ypr_population_update(population, nL = 0.15, Ln = 60), \"Length\", \"NaturalMortality\") population <- ypr_population_update(population, Sm = 0.5) ypr_plot_schedule(population, \"Length\", \"NaturalMortality\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"fishing-mortality","dir":"Articles","previous_headings":"Death","what":"Fishing Mortality","title":"Get Started with ypr","text":"vulnerability capture (VV) assumed vary length follows V=LVpLvVp+LVpV = \\frac{L^{V_p}}{L_v^{V_p} + L^{V_p}} VpV_p 100 vulnerability effectively knife-edged. probabilty retained captured (RR) depends release rate (ρ\\rho), slot limits (LloL_{lo} LupL_{}) non-compliance limits (NcN_c) fishing mortality (UU) depends VV, RR probability capture fully vulnerable (pipi) well hooking mortality (HmH_m) U=V⋅π⋅R+V⋅π⋅(1−R)⋅HmU = V \\cdot \\pi \\cdot R + V \\cdot \\pi \\cdot (1 - R) \\cdot H_m calculation assumes released fish recaught year.","code":"population <- ypr_population_update(population, Lv = 50, Vp = 50) ypr_plot_schedule(population, \"Length\", \"Vulnerability\") population <- ypr_population_update(population, rho = 0.5, Llo = 40, Lup = 70, Nc = 0.1) ypr_plot_schedule(population, \"Length\", \"Retention\") population <- ypr_population_update(population, pi = 0.3, Hm = 0.2) ypr_plot_schedule(population, \"Length\", \"FishingMortality\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"recruitment","dir":"Articles","previous_headings":"","what":"Recruitment","title":"Get Started with ypr","text":"growth, reproduction death defined, final task estimate recruitment (birth) rate. requires lifetime number spawners per spawner low density (RkR_k) recruitment age (RtR_t; default 1) defined. recruitment follows Beverton-Holt (BH=1BH = 1) curve R=α⋅E(β⋅E+1)R = \\frac{\\alpha \\cdot E}{(\\beta \\cdot E + 1)} EE annual eggs (stock) RR annual recruits age RtR_t. Ricker curve (BH=0BH = 0) relationship follows R=α⋅E⋅exp(−β⋅E)R = \\alpha \\cdot E \\cdot \\exp (-\\beta \\cdot E) number recruits carrying capacity (RmaxR_\\text{max}) scaling constant affects estimate yield. calculating recruitment important introduce concept (unfished) survivorship (lxalx_a) probability recruit surviving age aa absence fish mortality. unfished survivorship (lxalx_a) defined recursively lxRt=1,lxa=lxa−1⋅(1−Na−1)fora>Rtlx_{R_t} = 1, lx_a = lx_{-1} \\cdot (1-N_{-1}) \\;\\text{}\\; > R_t NaN_a annual interval natural mortality age aa. fished survivorship (lxaFlx_a^F) lxRtF=1,lxaF=lxa−1F⋅(1−(1−Na−1)⋅(1−Ua−1))fora>Rtlx_{R_t}^F = 1, lx_a^F = lx_{-1}^F \\cdot (1 - (1 - N_{-1}) \\cdot (1 - U_{-1})) \\;\\text{}\\; > R_t lifetime number eggs deposited per (unfished) recruit (ϕ\\phi) just ϕ=∑=Rttmaxlxa⋅Fa/2⋅Sa\\phi = \\sum_{= R_t}^{t_\\text{max}} lx_a \\cdot F_a/2 \\cdot S_a tmaxt_\\text{max} maximum age considered (default 20) FaF_a fecundity age aa divided two sex ratio assumed 1:1 SaS_a probability spawning. fished equivalent denoted ϕF\\phi_F. important realize unfished equilibrium annual number recruits (R0R_0) related annual egg deposition according following equation E0=ϕ⋅R0E_0 = \\phi \\cdot R_0 definition α=Rk⋅R0E0=Rkϕ\\alpha = \\frac{R_k \\cdot R_0}{E_0} = \\frac{R_k}{\\phi} β\\beta term Beverton-Holt curve can found rearranging following formula R0=α⋅ϕ⋅R0β⋅ϕ⋅R0+1R_0 = \\frac{\\alpha \\cdot \\phi \\cdot R_0}{\\beta \\cdot \\phi \\cdot R_0 + 1} β⋅ϕ⋅R0+1=α⋅ϕ\\beta \\cdot \\phi \\cdot R_0 + 1 = \\alpha \\cdot \\phi β=α⋅ϕ−1ϕ⋅R0\\beta = \\frac{\\alpha \\cdot \\phi - 1}{\\phi \\cdot R_0} equivalent equation Ricker curve arrived follows R0=α⋅ϕ⋅R0⋅exp(−β⋅ϕ⋅R0)R_0 = \\alpha \\cdot \\phi \\cdot R_0 \\cdot \\exp (-\\beta \\cdot \\phi \\cdot R_0) 1exp(−β⋅ϕ⋅R0)=α⋅ϕ\\frac{1}{\\exp (-\\beta \\cdot \\phi \\cdot R_0)} = \\alpha \\cdot \\phi β⋅ϕ⋅R0=log(α⋅ϕ)\\beta \\cdot \\phi \\cdot R_0 = \\log(\\alpha \\cdot \\phi) β=log(α⋅ϕ)ϕ⋅R0\\beta = \\frac{\\log(\\alpha \\cdot \\phi)}{\\phi \\cdot R_0} number recruits fished equilibrium (R0FR_{0F}) can found Beverton-Holt curve follows R0F=α⋅ϕF⋅R0Fβ⋅ϕF⋅R0F+1R_{0F} = \\frac{\\alpha \\cdot \\phi_F \\cdot R_{0F}}{\\beta \\cdot \\phi_F \\cdot R_{0F} + 1} β⋅ϕF⋅R0F+1=α⋅ϕF\\beta \\cdot \\phi_F \\cdot R_{0F} + 1 = \\alpha \\cdot \\phi_FR0F=α⋅ϕF−1β⋅ϕFR_{0F} = \\frac{\\alpha \\cdot \\phi_F - 1}{\\beta \\cdot \\phi_F} Ricker R0F=α⋅ϕF⋅R0F⋅exp(−β⋅ϕF⋅R0F)R_{0F} = \\alpha \\cdot \\phi_F \\cdot R_{0F} \\cdot \\exp (-\\beta \\cdot \\phi_F \\cdot R_{0F}) 1exp(−β⋅ϕF⋅R0F)=α⋅ϕF\\frac{1}{\\exp(-\\beta \\cdot \\phi_F \\cdot R_{0F})} = \\alpha \\cdot \\phi_F β⋅ϕF⋅R0F=log(α⋅ϕF)\\beta \\cdot \\phi_F \\cdot R_{0F} = \\log(\\alpha \\cdot \\phi_F) R0F=log(α⋅ϕF)β⋅ϕFR_{0F} = \\frac{\\log(\\alpha \\cdot \\phi_F)}{\\beta \\cdot \\phi_F} Finally estimates rescaled carrying capacity identical RmaxR_\\text{max} following transformations β=β⋅κ/Rmax \\beta = \\beta \\cdot \\kappa / R_\\text{max} R0=R0/κ⋅Rmax R_0 = R_0 / \\kappa \\cdot R_\\text{max} R0F=R0F/κ⋅Rmax R_{0F} = R_{0F} / \\kappa \\cdot R_\\text{max} κ\\kappa, carrying capacity original scale, α/β\\alpha/\\beta Beverton-Holt α/(β⋅e)\\alpha/(\\beta \\cdot e) Ricker curve.","code":"population <- ypr_population_update(population, Rk = 3) ypr_plot_sr(population, plot_values = FALSE) population <- ypr_population_update(population, BH = 0L) ypr_plot_sr(population, plot_values = FALSE) ypr_plot_schedule(population, \"Age\", \"Survivorship\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"yield","dir":"Articles","previous_headings":"","what":"Yield","title":"Get Started with ypr","text":"yield simply number fish caught (irrespective weight whether harvested) given Y=∑=RttmaxR0F⋅lxaF⋅π⋅VaY = \\sum_{= R_t}^{t_\\text{max}} R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a harvested fish considered becomes Y=∑=RttmaxR0F⋅lxaF⋅π⋅Va⋅RY = \\sum_{= R_t}^{t_\\text{max}} R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a \\cdot R total weight (kg) important Y=∑=RttmaxR0F⋅lxaF⋅π⋅Va⋅R⋅Wa/1000Y = \\sum_{= R_t}^{t_\\text{max}} R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a \\cdot R \\cdot W_a/1000 trophy fish considered Y=∑=Rttmaxif(La # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.3 0.18 0.0505 7.39 66.8 3006. 3.39 #> 2 optimal 0.441 0.265 0.0553 7.35 66.7 2978. 5.53"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"efficiency","dir":"Articles","previous_headings":"","what":"Efficiency","title":"Get Started with ypr","text":"catchability q indicates probability capture unit effort (EE). assumed related π\\pi according relationship π=1−exp(log(1−q)⋅E)\\pi = 1 - \\exp(\\log(1-q)\\cdot E) can rearranged give E=log(1−π)log(1−q).E = \\frac{\\log(1-\\pi)}{\\log(1-q)}.","code":"ypr_plot_yield(population, y = \"Effort\", harvest = TRUE, biomass = TRUE, Ly = 60) ypr_plot_yield(population, y = \"YPUE\", harvest = TRUE, biomass = TRUE, Ly = 60) #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_line()`)."},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Joe Thorley. Author, maintainer. Ayla Pearson. Contributor. . Copyright holder, funder.","code":""},{"path":"https://poissonconsulting.github.io/ypr/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Thorley J (2024). ypr: Yield Per Recruit. R package version 0.6.0.9000, https://github.com/poissonconsulting/ypr, https://poissonconsulting.github.io/ypr/.","code":"@Manual{, title = {ypr: Yield Per Recruit}, author = {Joe Thorley}, year = {2024}, note = {R package version 0.6.0.9000, https://github.com/poissonconsulting/ypr}, url = {https://poissonconsulting.github.io/ypr/}, }"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"introduction","dir":"","previous_headings":"","what":"Introduction","title":"Yield Per Recruit","text":"ypr R package implements equilibrium-based yield per recruit methods. Yield per recruit methods can used estimate optimal yield (Walters Martell 2004) fish population one ecotypes. yield can based number fish caught (harvested) biomass fish just large (trophy) individuals. key life history parameters growth coefficient (k) mean maximum length (Linf) Von Bertalanffy growth curve length 50% mature (Ls) length 50% vulnerable harvest (Lv) annual interval natural mortality rate (n) lifetime number spawners per spawner low density (Rk) case ecotypes relative proportion recruits belong ecotype (RPR) calculations account stochasticity, predator-prey dynamics, angler responses density-dependent growth.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Yield Per Recruit","text":"install latest release CRAN install developmental version GitHub","code":"install.packages(\"ypr\") # install.packages(\"remotes\") remotes::install_github(\"poissonconsulting/ypr\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"schedule","dir":"","previous_headings":"Demonstration","what":"Schedule","title":"Yield Per Recruit","text":"","code":"library(ypr) population <- ypr_population(Rk = 5, Ls = 50, Rmax = 100, rho = 0.6) ypr_plot_schedule(population, x = \"Length\", y = \"Spawning\") ypr_tabulate_schedule(population) #> # A tibble: 20 × 11 #> Age Length Weight Fecundity Spawning NaturalMor…¹ Vulner…² Reten…³ Fishin…⁴ #> #> 1 1 13.9 27.0 27.0 3.13e-56 0.2 3.13e-56 0.4 2.50e-57 #> 2 2 25.9 174. 174. 2.91e-29 0.2 2.91e-29 0.4 2.33e-30 #> 3 3 36.2 476. 476. 1.04e-14 0.2 1.04e-14 0.4 8.35e-16 #> 4 4 45.1 918. 918. 3.46e- 5 0.2 3.46e- 5 0.4 2.77e- 6 #> 5 5 52.8 1469. 1469. 9.95e- 1 0.2 9.95e- 1 0.4 7.96e- 2 #> 6 6 59.3 2090. 2090. 1.00e+ 0 0.2 1.00e+ 0 0.4 8.00e- 2 #> 7 7 65.0 2747. 2747. 1.00e+ 0 0.2 1.00e+ 0 0.4 8.00e- 2 #> 8 8 69.9 3412. 3412. 1.00e+ 0 0.2 1.00e+ 0 0.4 8.00e- 2 #> 9 9 74.1 4065. 4065. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 10 10 77.7 4689. 4689. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 11 11 80.8 5274. 5274. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 12 12 83.5 5816. 5816. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 13 13 85.8 6310. 6310. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 14 14 87.8 6758. 6758. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 15 15 89.5 7160. 7160. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 16 16 90.9 7518. 7518. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 17 17 92.2 7836. 7836. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 18 18 93.3 8116. 8116. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 19 19 94.2 8363. 8363. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> 20 20 95.0 8580. 8580. 1 e+ 0 0.2 1 e+ 0 0.4 8 e- 2 #> # … with 2 more variables: Survivorship , FishedSurvivorship , and #> # abbreviated variable names ¹​NaturalMortality, ²​Vulnerability, ³​Retention, #> # ⁴​FishingMortality"},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"fish","dir":"","previous_headings":"Demonstration","what":"Fish","title":"Yield Per Recruit","text":"","code":"ypr_plot_fish(population, color = \"white\") ypr_tabulate_fish(population) #> # A tibble: 20 × 8 #> Age Survivors Spawners Caught Harvested Released HandlingMortal…¹ Ecotype #> #> 1 1 70.1 2.19e-54 4.39e-55 1.76e-55 2.63e-55 0 #> 2 2 56.1 1.63e-27 3.26e-28 1.30e-28 1.96e-28 0 #> 3 3 44.9 4.68e-13 9.36e-14 3.74e-14 5.62e-14 0 #> 4 4 35.9 1.24e- 3 2.48e- 4 9.93e- 5 1.49e- 4 0 #> 5 5 28.7 2.86e+ 1 5.72e+ 0 2.29e+ 0 3.43e+ 0 0 #> 6 6 21.1 2.11e+ 1 4.23e+ 0 1.69e+ 0 2.54e+ 0 0 #> 7 7 15.6 1.56e+ 1 3.11e+ 0 1.24e+ 0 1.87e+ 0 0 #> 8 8 11.5 1.15e+ 1 2.29e+ 0 9.16e- 1 1.37e+ 0 0 #> 9 9 8.43 8.43e+ 0 1.69e+ 0 6.74e- 1 1.01e+ 0 0 #> 10 10 6.20 6.20e+ 0 1.24e+ 0 4.96e- 1 7.44e- 1 0 #> 11 11 4.57 4.57e+ 0 9.13e- 1 3.65e- 1 5.48e- 1 0 #> 12 12 3.36 3.36e+ 0 6.72e- 1 2.69e- 1 4.03e- 1 0 #> 13 13 2.47 2.47e+ 0 4.95e- 1 1.98e- 1 2.97e- 1 0 #> 14 14 1.82 1.82e+ 0 3.64e- 1 1.46e- 1 2.18e- 1 0 #> 15 15 1.34 1.34e+ 0 2.68e- 1 1.07e- 1 1.61e- 1 0 #> 16 16 0.986 9.86e- 1 1.97e- 1 7.89e- 2 1.18e- 1 0 #> 17 17 0.726 7.26e- 1 1.45e- 1 5.81e- 2 8.71e- 2 0 #> 18 18 0.534 5.34e- 1 1.07e- 1 4.27e- 2 6.41e- 2 0 #> 19 19 0.393 3.93e- 1 7.86e- 2 3.15e- 2 4.72e- 2 0 #> 20 20 0.289 2.89e- 1 5.79e- 2 2.31e- 2 3.47e- 2 0 #> # … with abbreviated variable name ¹​HandlingMortalities"},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"stock-recruitment","dir":"","previous_headings":"Demonstration","what":"Stock-Recruitment","title":"Yield Per Recruit","text":"","code":"ypr_plot_sr(population) ypr_tabulate_sr(population) #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 286350. 80 159. 3600. #> 2 actual 0.2 0.08 167831. 70.1 108. 3112. #> 3 optimal 0.458 0.183 84129. 54.0 63.7 2641."},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"yield","dir":"","previous_headings":"Demonstration","what":"Yield","title":"Yield Per Recruit","text":"","code":"ypr_tabulate_yield(population) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.2 0.08 8.63 7.67 65.8 3112. 2.12 #> 2 optimal 0.458 0.183 11.7 6.87 62.6 2641. 5.82 ypr_plot_yield(population)"},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"information","dir":"","previous_headings":"","what":"Information","title":"Yield Per Recruit","text":"information see Get Started vignette.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"interaction","dir":"","previous_headings":"Information","what":"Interaction","title":"Yield Per Recruit","text":"interactively explore effects altering individual parameters schedule, stock-recruitment yield see ypr shiny app.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"creditation","dir":"","previous_headings":"","what":"Creditation","title":"Yield Per Recruit","text":"Development ypr partially supported Habitat Conservation Trust Foundation Ministry Forests, Lands Natural Resource Operations. hex designed Forest.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"contribution","dir":"","previous_headings":"","what":"Contribution","title":"Yield Per Recruit","text":"Please report issues. Pull requests always welcome.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Yield Per Recruit","text":"Please note ypr project released Contributor Code Conduct. contributing project, agree abide terms","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":null,"dir":"Reference","previous_headings":"","what":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"population parameters Bull Trout Adams Lake Bison et al (2003)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"","code":"adams_bt_03"},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"Bison, R., O’Brien, D., Martell, S.J.D. 2003. Analysis Sustainable Fishing Options Adams Lake Bull Trout Using Life History Telemetry Data. BC Ministry Water Land Air Protection, Kamloops, B.C.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"","code":"adams_bt_03 #> tmax: 20 #> k: 0.13 #> Linf: 131 #> t0: 0.2 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.4 #> Ls: 40 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3.8 #> n: 0.3 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 5 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.06 #> rho: 0 #> Hm: 0.15 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(adams_bt_03)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":null,"dir":"Reference","previous_headings":"","what":"Coerce to an Ecotypes Object — as_ypr_ecotypes","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"Coerce Ecotypes Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"","code":"as_ypr_ecotypes(x, ...) # S3 method for class 'data.frame' as_ypr_ecotypes(x, ...) # S3 method for class 'ypr_population' as_ypr_ecotypes(x, ...) # S3 method for class 'ypr_populations' as_ypr_ecotypes(x, ...) # S3 method for class 'ypr_ecotypes' as_ypr_ecotypes(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"x object coerce. ... Additional arguments.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"object class ypr_ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"as_ypr_ecotypes(data.frame): Coerce data.frame Ecotypes Object as_ypr_ecotypes(ypr_population): Coerce Population Object Ecotypes Object as_ypr_ecotypes(ypr_populations): Coerce Populations Object Ecotypes Object as_ypr_ecotypes(ypr_ecotypes): Coerce Ecotypes Object Ecotypes Object","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"","code":"as_ypr_ecotypes(as.data.frame(ypr_ecotypes(Ls = c(10, 15, 20)))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 10, 15, 20 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Ls_10, Ls_15, Ls_20 as_ypr_ecotypes(ypr_population()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_ecotypes(ypr_populations(Ls = c(10, 15, 20))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 10, 15, 20 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Ls_10, Ls_15, Ls_20 as_ypr_ecotypes(ypr_ecotypes(Ls = c(10, 15, 20))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 10, 15, 20 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Ls_10, Ls_15, Ls_20"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Coerce to a Population Object — as_ypr_population","title":"Coerce to a Population Object — as_ypr_population","text":"Coerce Population Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Coerce to a Population Object — as_ypr_population","text":"","code":"as_ypr_population(x, ...) # S3 method for class 'data.frame' as_ypr_population(x, ...) # S3 method for class 'ypr_population' as_ypr_population(x, ...) # S3 method for class 'ypr_populations' as_ypr_population(x, ...) # S3 method for class 'ypr_ecotypes' as_ypr_population(x, ...) # S3 method for class 'data.frame' as_ypr_populations(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Coerce to a Population Object — as_ypr_population","text":"x object coerce. ... Unused.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Coerce to a Population Object — as_ypr_population","text":"object class ypr_population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Coerce to a Population Object — as_ypr_population","text":"as_ypr_population(data.frame): Coerce data.frame Population Object as_ypr_population(ypr_population): Coerce Population Object Population Object as_ypr_population(ypr_populations): Coerce Populations Object length 1 Population Object as_ypr_population(ypr_ecotypes): Coerce Ecotypes Object length 1 Population Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"functions","dir":"Reference","previous_headings":"","what":"Functions","title":"Coerce to a Population Object — as_ypr_population","text":"as_ypr_populations(data.frame): Coerce data.frame Populations Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Coerce to a Population Object — as_ypr_population","text":"","code":"as_ypr_population(as.data.frame(ypr_population())) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_population(ypr_populations()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_population(ypr_populations()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_population(ypr_ecotypes()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_populations(as.data.frame(ypr_populations(Rk = c(3, 4)))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3, 4 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":null,"dir":"Reference","previous_headings":"","what":"Coerce to a Populations Object — as_ypr_populations","title":"Coerce to a Populations Object — as_ypr_populations","text":"Coerce Populations Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Coerce to a Populations Object — as_ypr_populations","text":"","code":"as_ypr_populations(x, ...) # S3 method for class 'ypr_population' as_ypr_populations(x, ...) # S3 method for class 'ypr_populations' as_ypr_populations(x, ...) # S3 method for class 'ypr_ecotypes' as_ypr_populations(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Coerce to a Populations Object — as_ypr_populations","text":"x object coerce. ... Unused.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Coerce to a Populations Object — as_ypr_populations","text":"object class ypr_ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Coerce to a Populations Object — as_ypr_populations","text":"as_ypr_populations(ypr_population): Coerce Population Object Population Object as_ypr_populations(ypr_populations): Coerce Populations Object length 1 Population Object as_ypr_populations(ypr_ecotypes): Coerce Ecotypes Object length 1 Population Object","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Coerce to a Populations Object — as_ypr_populations","text":"","code":"as_ypr_populations(ypr_population()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_populations(ypr_populations()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_populations(ypr_ecotypes()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":null,"dir":"Reference","previous_headings":"","what":"Check Ecotypes — check_ecotypes","title":"Check Ecotypes — check_ecotypes","text":"Checks ypr_ecotypes object valid parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check Ecotypes — check_ecotypes","text":"","code":"check_ecotypes(x, x_name = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check Ecotypes — check_ecotypes","text":"x object check. x_name string name object x NULL.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check Ecotypes — check_ecotypes","text":"informative error test fails invisible copy x.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check Ecotypes — check_ecotypes","text":"","code":"check_ecotypes(ypr_ecotypes())"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Check Population — check_population","title":"Check Population — check_population","text":"Checks ypr_population object valid parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check Population — check_population","text":"","code":"check_population(x, x_name = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check Population — check_population","text":"x object check. x_name string name object x NULL.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check Population — check_population","text":"informative error test fails invisible copy x.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check Population — check_population","text":"","code":"check_population(ypr_population())"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":null,"dir":"Reference","previous_headings":"","what":"Check Populations — check_populations","title":"Check Populations — check_populations","text":"Checks ypr_populations object valid parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check Populations — check_populations","text":"","code":"check_populations(x, x_name = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check Populations — check_populations","text":"x object check. x_name string name object x NULL.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check Populations — check_populations","text":"informative error test fails invisible copy x.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check Populations — check_populations","text":"","code":"check_populations(ypr_populations())"},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":null,"dir":"Reference","previous_headings":"","what":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"populations parameters Bull Trout Chilliwack Lake Taylor (2005)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"","code":"chilliwack_bt_05"},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"object class ypr_populations().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"Taylor, J.L. 2005. Sustainability Chilliwack Lake Char Fishery. Ministry Water, Land Air Protection, Surrey, B.C.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"","code":"chilliwack_bt_05 #> tmax: 20 #> k: 0.12 #> Linf: 86 #> t0: 0.018 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 2.8 #> Ls: 38.5 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5, 4.6, 2.5, 4.6, 2.5, 4.6, 2.5, 4.6, 2.5, 4.6, 2.5, 4.6 #> n: 0.17 #> nL: 0.2 #> Ln: 1000 #> Lv: 36.5 #> Vp: 11.7 #> Llo: 0, 0, 60, 60, 1000, 1000, 0, 0, 60, 60, 1000, 1000 #> Lup: 1000 #> Nc: 0.15 #> pi: 0.2 #> rho: 0 #> Hm: 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2 #> Rmax: 250 #> Wa: 0.022 #> fa: 2.29 #> q: 0.1 #> RPR: 1 yield <- ypr_tabulate_yield(chilliwack_bt_05, type = \"optimal\") yield$pi <- round(yield$pi, 2) yield <- yield[c(\"Llo\", \"Hm\", \"Rk\", \"pi\")] yield <- tidyr::spread(yield, Rk, pi) yield <- yield[order(-yield$Hm), ] yield #> # A tibble: 6 × 4 #> Llo Hm `2.5` `4.6` #> #> 1 0 0.2 0.08 0.14 #> 2 60 0.2 0.14 0.25 #> 3 1000 0.2 0.25 0.45 #> 4 0 0.05 0.08 0.14 #> 5 60 0.05 0.17 0.37 #> 6 1000 0.05 0.41 0.74 if (FALSE) { # \\dontrun{ ypr_plot_yield(chilliwack_bt_05, plot_values = FALSE) + ggplot2::facet_grid(Rk ~ Hm) + ggplot2::aes(group = Llo, linetype = Llo) } # }"},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"Tests Population, Populations Ecotypes","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"","code":"is.ypr_population(x) is_ypr_population(x) is.ypr_populations(x) is_ypr_populations(x) is.ypr_ecotypes(x) is_ypr_ecotypes(x)"},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"x object test.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"functions","dir":"Reference","previous_headings":"","what":"Functions","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"is_ypr_population(): Test Population .ypr_populations(): Test Populations is_ypr_populations(): Test Populations .ypr_ecotypes(): Test Ecotypes is_ypr_ecotypes(): Test Ecotypes","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"","code":"is.ypr_population(ypr_population()) #> [1] TRUE is_ypr_population(ypr_population()) #> [1] TRUE is.ypr_populations(ypr_populations()) #> [1] TRUE is_ypr_population(ypr_populations()) #> [1] FALSE is.ypr_ecotypes(ypr_ecotypes()) #> [1] TRUE is_ypr_ecotypes(ypr_ecotypes()) #> [1] TRUE"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":null,"dir":"Reference","previous_headings":"","what":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"population parameters Bull Trout Kootenay Lake Andrusak Thorley (2013)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"","code":"kootenay_bt_13"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"estimates used management.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"Andrusak, G.F., Thorley, J.L. 2013. Kootenay Lake Exploitation Study: Fishing Natural Mortality Large Rainbow Trout Bull Trout: 2013 Annual Report. Poisson Consulting Ltd. Redfish Consulting Ltd. Report, Habitat Conservation Trust Foundation, Victoria, BC.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"","code":"kootenay_bt_13 #> tmax: 20 #> k: 0.19 #> Linf: 100 #> t0: 0.5 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.04 #> Ls: 60 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 5 #> n: 0.29 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 5 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.1 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(kootenay_bt_13)"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":null,"dir":"Reference","previous_headings":"","what":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"population parameters Rainbow Trout Kootenay Lake.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"","code":"kootenay_rb"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"estimates liable change used management.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"Thorley, J.L., Andrusak, G.F. 2017. fishing natural mortality large, piscivorous Bull Trout Rainbow Trout Kootenay Lake, British Columbia (2008–2013). PeerJ 5: e2874. doi:10.7717/peerj.2874.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"","code":"kootenay_rb #> tmax: 20 #> k: 0.26 #> Linf: 100 #> t0: 0.5 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.2 #> Ls: 75 #> Sp: 20 #> es: 0.9 #> Sm: 0.53 #> fb: 0.86 #> tR: 1 #> BH: 1 #> Rk: 17.65 #> n: 0.23 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 10 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.14 #> rho: 0.62 #> Hm: 0.25 #> Rmax: 115000 #> Wa: 0.005 #> fa: 3.9 #> q: 0.028 #> RPR: 1 ypr_plot_yield(kootenay_rb)"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":null,"dir":"Reference","previous_headings":"","what":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"population parameters Rainbow Trout Kootenay Lake Andrusak Thorley (2013)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"","code":"kootenay_rb_13"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"estimates used management.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"Andrusak, G.F., Thorley, J.L. 2013. Kootenay Lake Exploitation Study: Fishing Natural Mortality Large Rainbow Trout Bull Trout: 2013 Annual Report. Poisson Consulting Ltd. Redfish Consulting Ltd. Report, Habitat Conservation Trust Foundation, Victoria, BC.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"","code":"kootenay_rb_13 #> tmax: 20 #> k: 0.25 #> Linf: 100 #> t0: 0.75 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.39 #> Ls: 60 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 10 #> n: 0.38 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 5 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.1 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(kootenay_rb_13)"},{"path":"https://poissonconsulting.github.io/ypr/reference/params.html","id":null,"dir":"Reference","previous_headings":"","what":"Parameter Descriptions for ypr Functions — params","title":"Parameter Descriptions for ypr Functions — params","text":"Parameter Descriptions ypr Functions","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/params.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parameter Descriptions for ypr Functions — params","text":"tmax maximum age (yr). k VB growth coefficient (yr-1). Linf VB mean maximum length (cm). t0 (theoretical) age zero length (yr). k2 VB growth coefficient length L2 (yr-1). Linf2 VB mean maximum length length L2 (cm). L2 length (age negative) growth switches first second phase (cm yr). Wb weight (function length) scaling exponent. Ls length (age negative) 50 % mature (cm yr). Sp maturity (function length) power. es annual probability mature fish spawning. Sm spawning mortality probability. fb fecundity (function weight) scaling exponent. tR age survival density-independent (yr). BH Recruitment follows Beverton-Holt (1) Ricker (0) relationship. Rk lifetime spawners per spawner low density (egg tR survival 0 1). n annual interval natural mortality rate age tR. nL annual interval natural mortality rate length Ln. Ln length (age negative) annual interval natural mortality rate switches n nL (cm yr). Lv length (age negative) 50 % vulnerable harvest (cm yr). Vp vulnerability harvest (function length) power. Llo lower harvest slot length (cm). Lup upper harvest slot length (cm). Nc slot limits non-compliance probability. pi vector probabilities capture calculate yield . rho release probability. Hm hooking mortality probability. Rmax number recruits carrying capacity (ind). Wa (extrapolated) weight 1 cm individual (g). fa (theoretical) fecundity 1 g female (eggs). q catchability (annual probability capture) unit effort. RPR relative proportion recruits ecotype. flag specifying whether include parameter values. u flag specifying whether plot exploitation rate opposed capture rate. percent flag specifying whether plot number fish percent frequency (default). color string color around bar (NULL). population object class ypr_population(). populations object class ypr_populations(). ecotypes object class ypr_ecotypes(). plot_values flag specifying whether plot actual optimal values. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. title string report title. date date report date. file string path file (without extension). binwidth positive integer width bins grouping. type string indicating whether include '' just 'actual' 'optimal' yield. object population populations. ... Unused parameters. expand flag specifying whether expand parameter combinations. view flag specifying whether view report (rendering html). ask flag specifying whether ask overwriting creating file. description string describing population. age numeric vector age (yr). length numeric vector length (cm). names character vector unique ecotype names. x object coerce.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Population Schedule — plot.ypr_population","title":"Plot Population Schedule — plot.ypr_population","text":"Plot Population Schedule","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Population Schedule — plot.ypr_population","text":"","code":"# S3 method for class 'ypr_population' plot(x, type = \"b\", ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Population Schedule — plot.ypr_population","text":"x population plot. type string specifying plot type. Possible values include 'b', 'p' 'l'. ... Additional arguments passed graphics::plot function.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Population Schedule — plot.ypr_population","text":"invisible copy original object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Population Schedule — plot.ypr_population","text":"","code":"if (FALSE) { # \\dontrun{ plot(ypr_population()) } # }"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":null,"dir":"Reference","previous_headings":"","what":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"population parameters Bull Trout Quesnel Lake, BC.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"","code":"quesnel_bt"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"estimates liable change used management.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"","code":"quesnel_bt #> tmax: 20 #> k: 0.13 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.4 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3.8 #> n: 0.3 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.06 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(quesnel_bt)"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":null,"dir":"Reference","previous_headings":"","what":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"population parameters Lake Trout Quesnel Lake, BC.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"","code":"quesnel_lt"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"estimates liable change used management.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"","code":"quesnel_lt #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.1 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5 #> n: 0.15 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.04 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(quesnel_lt)"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":null,"dir":"Reference","previous_headings":"","what":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"population parameters Rainbow Trout Quesnel Lake, BC.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"","code":"quesnel_rb"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"estimates liable change used management.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"","code":"quesnel_rb #> tmax: 20 #> k: 0.2 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 6 #> n: 0.5 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.14 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(quesnel_rb)"},{"path":"https://poissonconsulting.github.io/ypr/reference/reexports.html","id":null,"dir":"Reference","previous_headings":"","what":"Objects exported from other packages — reexports","title":"Objects exported from other packages — reexports","text":"objects imported packages. Follow links see documentation. tibble as_tibble","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr-package.html","id":null,"dir":"Reference","previous_headings":"","what":"ypr: Yield Per Recruit — ypr-package","title":"ypr: Yield Per Recruit — ypr-package","text":"implementation equilibrium-based yield per recruit methods. Yield per recruit methods can used estimate optimal yield fish population described Walters Martell (2004) . yield can based number fish caught (harvested) biomass caught fish just large (trophy) individuals.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"ypr: Yield Per Recruit — ypr-package","text":"Maintainer: Joe Thorley joe@poissonconsulting.ca (ORCID) contributors: Ayla Pearson (ORCID) [contributor] Poisson Consulting [copyright holder, funder]","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":null,"dir":"Reference","previous_headings":"","what":"Age At Length — ypr_age_at_length","title":"Age At Length — ypr_age_at_length","text":"Age Length","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Age At Length — ypr_age_at_length","text":"","code":"ypr_age_at_length(population, length)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Age At Length — ypr_age_at_length","text":"population object class ypr_population(). length numeric vector length (cm).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Age At Length — ypr_age_at_length","text":"double vector lengths.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Age At Length — ypr_age_at_length","text":"","code":"ypr_age_at_length(ypr_population(), seq(0, 100, by = 10)) #> [1] 0.0000000 0.7024034 1.4876237 2.3778330 3.4055042 4.6209812 #> [7] 6.1086049 8.0264854 10.7295861 15.3505673 Inf"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":null,"dir":"Reference","previous_headings":"","what":"Detabulate Population Parameters — ypr_detabulate_parameters","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"Detabulate Population Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"","code":"ypr_detabulate_parameters(x)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"x data frame columns Parameter Value specifying one parameters values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"object class ypr_population()","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"","code":"ypr_detabulate_parameters(ypr_tabulate_parameters(ypr_population())) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":null,"dir":"Reference","previous_headings":"","what":"Create Ecotypes Object — ypr_ecotypes","title":"Create Ecotypes Object — ypr_ecotypes","text":"Creates ypr_ecotypes object.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create Ecotypes Object — ypr_ecotypes","text":"","code":"ypr_ecotypes(..., names = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create Ecotypes Object — ypr_ecotypes","text":"... Unused parameters. names character vector unique ecotype names.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create Ecotypes Object — ypr_ecotypes","text":"ypr_ecotypes() objects","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create Ecotypes Object — ypr_ecotypes","text":"","code":"ypr_ecotypes(Linf = c(1, 2)) #> tmax: 20 #> k: 0.15 #> Linf: 1, 2 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Linf_1, Linf_2 ypr_ecotypes(Linf = c(1, 2), t0 = c(0, 0.5)) #> tmax: 20 #> k: 0.15 #> Linf: 1, 2 #> t0: 0, 0.5 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Linf_1_t0_0, Linf_2_t0_0_5"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":null,"dir":"Reference","previous_headings":"","what":"Exploitation Probability — ypr_exploitation","title":"Exploitation Probability — ypr_exploitation","text":"Converts capture probabilities exploitation probabilities based release handling mortality probabilities probability exploitation includes handling mortalities. calculation assumes released fish recaught year.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Exploitation Probability — ypr_exploitation","text":"","code":"ypr_exploitation(object, pi = ypr_get_par(object))"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Exploitation Probability — ypr_exploitation","text":"object population populations. pi vector capture probabilities calculate exploitation probabilities .","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Exploitation Probability — ypr_exploitation","text":"vector exploitation probabilities.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Exploitation Probability — ypr_exploitation","text":"case release (100% handling mortalities) exploitation probability identical capture probability. Otherwise less.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Exploitation Probability — ypr_exploitation","text":"","code":"ypr_exploitation(ypr_population(pi = 0.4)) #> [1] 0.4 ypr_exploitation(ypr_population(pi = 0.4, rho = 0.6, Hm = 0.2)) #> [1] 0.208"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":null,"dir":"Reference","previous_headings":"","what":"Get Parameter Value — ypr_get_par","title":"Get Parameter Value — ypr_get_par","text":"Get Parameter Value","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get Parameter Value — ypr_get_par","text":"","code":"ypr_get_par(object, par = \"pi\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get Parameter Value — ypr_get_par","text":"object ypr object. par string parameter.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get Parameter Value — ypr_get_par","text":"numeric integer scalar vector parameter value.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get Parameter Value — ypr_get_par","text":"","code":"ypr_get_par(ypr_population()) #> [1] 0.2"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":null,"dir":"Reference","previous_headings":"","what":"Length At Age — ypr_length_at_age","title":"Length At Age — ypr_length_at_age","text":"Length Age","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Length At Age — ypr_length_at_age","text":"","code":"ypr_length_at_age(population, age)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Length At Age — ypr_length_at_age","text":"population object class ypr_population(). age numeric vector age (yr).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Length At Age — ypr_length_at_age","text":"double vector lengths.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Length At Age — ypr_length_at_age","text":"","code":"ypr_length_at_age(ypr_population(), seq(0, 5, by = 0.5)) #> [1] 0.000000 7.225651 13.929202 20.148378 25.918178 31.271072 36.237185 #> [8] 40.844464 45.118836 49.084358 52.763345"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Population(s) or Ecotype Names — ypr_names","title":"Population(s) or Ecotype Names — ypr_names","text":"Generates set unique names based differences parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Population(s) or Ecotype Names — ypr_names","text":"","code":"ypr_names(x, ...) # S3 method for class 'ypr_population' ypr_names(x, ...) # S3 method for class 'ypr_populations' ypr_names(x, ...) # S3 method for class 'ypr_ecotypes' ypr_names(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Population(s) or Ecotype Names — ypr_names","text":"x object class ypr_population, ypr_populations ypr_ecotypes. ... Unused.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Population(s) or Ecotype Names — ypr_names","text":"character vector unique parameter based names.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Population(s) or Ecotype Names — ypr_names","text":"Parameter RPR ignored irrelevant population(s) distinguish ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Population(s) or Ecotype Names — ypr_names","text":"ypr_names(ypr_population): Population Names ypr_names(ypr_populations): Populations Names ypr_names(ypr_ecotypes): Ecotypes Names","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Population(s) or Ecotype Names — ypr_names","text":"","code":"ypr_names(ypr_population()) #> [1] \"Pop_1\" ypr_names(ypr_populations()) #> [1] \"Pop_1\" ypr_names(ypr_populations()) #> [1] \"Pop_1\""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":null,"dir":"Reference","previous_headings":"","what":"Optimize Capture — ypr_optimize","title":"Optimize Capture — ypr_optimize","text":"Finds annual interval capture probability (pi) maximises yield given population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Optimize Capture — ypr_optimize","text":"","code":"ypr_optimize(object, Ly = 0, harvest = TRUE, biomass = FALSE)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Optimize Capture — ypr_optimize","text":"object population populations. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Optimize Capture — ypr_optimize","text":"annual interval capture probability (pi) maximises yield.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Optimize Capture — ypr_optimize","text":"","code":"ypr_optimize(ypr_population()) #> [1] 0.115183"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Biomass — ypr_plot_biomass","title":"Plot Biomass — ypr_plot_biomass","text":"Produces frequency histogram total fish 'Biomass' 'Eggs' deposition 'Age' class.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Biomass — ypr_plot_biomass","text":"","code":"ypr_plot_biomass(population, y = \"Biomass\", color = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Biomass — ypr_plot_biomass","text":"population object class ypr_population(). y string term y-axis. color string color around bar (NULL).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Biomass — ypr_plot_biomass","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Biomass — ypr_plot_biomass","text":"","code":"ypr_plot_biomass(ypr_population(), color = \"white\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Fish — ypr_plot_fish","title":"Plot Fish — ypr_plot_fish","text":"Produces frequency histogram number fish 'Survivors', 'Spawners', 'Caught', 'Harvested' 'Released' categories 'Length', 'Age' 'Weight' class.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Fish — ypr_plot_fish","text":"","code":"ypr_plot_fish( population, x = \"Age\", y = \"Survivors\", percent = FALSE, binwidth = 1L, color = NULL )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Fish — ypr_plot_fish","text":"population object class ypr_population(). x object coerce. y string term y-axis. percent flag specifying whether plot number fish percent frequency (default). binwidth positive integer width bins grouping. color string color around bar (NULL).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Fish — ypr_plot_fish","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Fish — ypr_plot_fish","text":"","code":"ypr_plot_fish(ypr_population(), color = \"white\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"Produces bivariate line plot two schedule terms.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"","code":"ypr_plot_schedule(population, x = \"Age\", y = \"Length\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"population object class ypr_population(). x string term x-axis. y string term y-axis.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"","code":"ypr_plot_schedule(ypr_population())"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Stock-Recruitment Curve — ypr_plot_sr","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"Plot Stock-Recruitment Curve","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"","code":"ypr_plot_sr( population, Ly = 0, harvest = TRUE, biomass = FALSE, plot_values = TRUE )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"population object class ypr_population(). Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. plot_values flag specifying whether plot actual optimal values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"","code":"ypr_plot_sr(ypr_population(Rk = 10)) ypr_plot_sr(ypr_population(Rk = 10, BH = 0L))"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Yield by Capture — ypr_plot_yield","title":"Plot Yield by Capture — ypr_plot_yield","text":"Plots 'Yield', 'Age', 'Length', 'Weight', 'Effort', 'YPUE' annual interval capture/exploitation probability.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Yield by Capture — ypr_plot_yield","text":"","code":"ypr_plot_yield(object, ...) # Default S3 method ypr_plot_yield( object, y = \"Yield\", pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, u = harvest, plot_values = TRUE, ... ) # S3 method for class 'ypr_populations' ypr_plot_yield( object, y = \"Yield\", pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, u = harvest, plot_values = TRUE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Yield by Capture — ypr_plot_yield","text":"object population populations. ... Unused parameters. y string term y-axis. pi vector probabilities capture calculate yield . Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. u flag specifying whether plot exploitation rate opposed capture rate. plot_values flag specifying whether plot actual optimal values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Yield by Capture — ypr_plot_yield","text":"ggplot2 object.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Plot Yield by Capture — ypr_plot_yield","text":"ypr_plot_yield(default): Plot Yield Capture ypr_plot_yield(ypr_populations): Plot Yield Capture","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Yield by Capture — ypr_plot_yield","text":"","code":"if (FALSE) { # \\dontrun{ ypr_plot_yield(ypr_populations( Rk = c(2.5, 4.6), Llo = c(0, 60) ), plot_values = FALSE ) + ggplot2::facet_wrap(~Llo) + ggplot2::aes_string(group = \"Rk\", color = \"Rk\") + ggplot2::scale_color_manual(values = c(\"black\", \"blue\")) ypr_plot_yield(ypr_populations(Rk = c(2.5, 4.6), Llo = c(0, 60))) + ggplot2::facet_grid(Rk ~ Llo) } # } ypr_plot_yield(ypr_population())"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Population Parameters — ypr_population","title":"Population Parameters — ypr_population","text":"Generates object class ypr_population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Population Parameters — ypr_population","text":"","code":"ypr_population( tmax = 20L, k = 0.15, Linf = 100, t0 = 0, k2 = 0.15, Linf2 = 100, L2 = 1000, Wb = 3, Ls = 50, Sp = 100, es = 1, Sm = 0, fb = 1, tR = 1L, BH = 1L, Rk = 3, n = 0.2, nL = 0.2, Ln = 1000, Lv = 50, Vp = 100, Llo = 0, Lup = 1000, Nc = 0, pi = 0.2, rho = 0, Hm = 0, Rmax = 1, Wa = 0.01, fa = 1, q = 0.1, RPR = 1 )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Population Parameters — ypr_population","text":"tmax maximum age (yr). k VB growth coefficient (yr-1). Linf VB mean maximum length (cm). t0 (theoretical) age zero length (yr). k2 VB growth coefficient length L2 (yr-1). Linf2 VB mean maximum length length L2 (cm). L2 length (age negative) growth switches first second phase (cm yr). Wb weight (function length) scaling exponent. Ls length (age negative) 50 % mature (cm yr). Sp maturity (function length) power. es annual probability mature fish spawning. Sm spawning mortality probability. fb fecundity (function weight) scaling exponent. tR age survival density-independent (yr). BH Recruitment follows Beverton-Holt (1) Ricker (0) relationship. Rk lifetime spawners per spawner low density (egg tR survival 0 1). n annual interval natural mortality rate age tR. nL annual interval natural mortality rate length Ln. Ln length (age negative) annual interval natural mortality rate switches n nL (cm yr). Lv length (age negative) 50 % vulnerable harvest (cm yr). Vp vulnerability harvest (function length) power. Llo lower harvest slot length (cm). Lup upper harvest slot length (cm). Nc slot limits non-compliance probability. pi annual capture probability. rho release probability. Hm hooking mortality probability. Rmax number recruits carrying capacity (ind). Wa (extrapolated) weight 1 cm individual (g). fa (theoretical) fecundity 1 g female (eggs). q catchability (annual probability capture) unit effort. RPR relative proportion recruits ecotype.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Population Parameters — ypr_population","text":"object class ypr_population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Population Parameters — ypr_population","text":"","code":"ypr_population(k = 0.1, Linf = 90) #> tmax: 20 #> k: 0.1 #> Linf: 90 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Population Names — ypr_population_names","title":"Population Names — ypr_population_names","text":"Generates set unique names based differences parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Population Names — ypr_population_names","text":"","code":"ypr_population_names(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Population Names — ypr_population_names","text":"population object class ypr_population, ypr_populations ypr_ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Population Names — ypr_population_names","text":"character vector unique parameter based names.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_update.html","id":null,"dir":"Reference","previous_headings":"","what":"Update a Population Object — ypr_population_update","title":"Update a Population Object — ypr_population_update","text":"ypr_update().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_update.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Update a Population Object — ypr_population_update","text":"","code":"ypr_population_update(population, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_update.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Update a Population Object — ypr_population_update","text":"population ypr_population object. ... One parameter values ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":null,"dir":"Reference","previous_headings":"","what":"Populations — ypr_populations","title":"Populations — ypr_populations","text":"Populations","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Populations — ypr_populations","text":"","code":"ypr_populations(..., expand = TRUE, names = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Populations — ypr_populations","text":"... Unused parameters. expand flag specifying whether expand parameter combinations. names character vector unique ecotype names.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Populations — ypr_populations","text":"list ypr_population() objects","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Populations — ypr_populations","text":"","code":"ypr_populations(Rk = c(2.5, 4.6), Hm = c(0.2, 0.05)) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5, 4.6, 2.5, 4.6 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0.05, 0.05, 0.2, 0.2 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":null,"dir":"Reference","previous_headings":"","what":"Expand Populations — ypr_populations_expand","title":"Expand Populations — ypr_populations_expand","text":"object class ypr_population() unique combinations parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Expand Populations — ypr_populations_expand","text":"","code":"ypr_populations_expand(populations)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Expand Populations — ypr_populations_expand","text":"populations object class ypr_populations().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Expand Populations — ypr_populations_expand","text":"object class ypr_population.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Expand Populations — ypr_populations_expand","text":"","code":"ypr_populations_expand( ypr_populations( Rk = c(2.5, 4, 2.5), Hm = c(0.1, 0.2, 0.1) ) ) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5, 4, 2.5, 4 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0.1, 0.1, 0.2, 0.2 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":null,"dir":"Reference","previous_headings":"","what":"Report — ypr_report","title":"Report — ypr_report","text":"Creates Rmd file can used generate report.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Report — ypr_report","text":"","code":"ypr_report( population, Ly = 0, harvest = TRUE, biomass = FALSE, title = \"Population Report\", description = \"\", date = Sys.Date(), file = \"report\", view = FALSE, ask = TRUE )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Report — ypr_report","text":"population object class ypr_population(). Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. title string report title. description string describing population. date date report date. file string path file (without extension). view flag specifying whether view report (rendering html). ask flag specifying whether ask overwriting creating file.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Report — ypr_report","text":"invisible character vector contents file.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Report — ypr_report","text":"","code":"if (FALSE) { # \\dontrun{ ypr_report(ypr_population(), file = tempfile(), ask = FALSE) } # }"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_schedule.html","id":null,"dir":"Reference","previous_headings":"","what":"Life-History Schedule — ypr_schedule","title":"Life-History Schedule — ypr_schedule","text":"DEPRECATED: Replace ypr_schedule() ypr_tabulate_schedule()","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_schedule.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Life-History Schedule — ypr_schedule","text":"","code":"ypr_schedule(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_schedule.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Life-History Schedule — ypr_schedule","text":"Generates life-history schedule age population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":null,"dir":"Reference","previous_headings":"","what":"Stock-Recruitment Parameters — ypr_sr","title":"Stock-Recruitment Parameters — ypr_sr","text":"Returns single rowed data frame SR parameters: alpha Survival egg age tR low density beta Density-dependence Rk Lifetime spawners per spawner low density phi Lifetime eggs deposited per recruit unfished equilibrium phiF Lifetime eggs deposited per recruit fished equilibrium R0 Age tR recruits unfished equilibrium R0F Age tR recruits fished equilibrium S0 Spawners unfished equilibrium S0F Spawners fished equilibrium","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Stock-Recruitment Parameters — ypr_sr","text":"","code":"ypr_sr(object)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Stock-Recruitment Parameters — ypr_sr","text":"object population populations.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Stock-Recruitment Parameters — ypr_sr","text":"data frame SR parameters.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Stock-Recruitment Parameters — ypr_sr","text":"","code":"ypr_sr(ypr_population()) # Beverton-Holt #> # A tibble: 1 × 9 #> alpha beta Rk phi phiF R0 R0F S0 S0F #> #> 1 0.000838 0.000838 3 3579. 1465. 0.667 0.186 1.33 0.211 ypr_sr(ypr_population(BH = 0L)) # Ricker #> # A tibble: 1 × 9 #> alpha beta Rk phi phiF R0 R0F S0 S0F #> #> 1 0.000838 0.000308 3 3579. 1465. 0.995 0.455 1.98 0.517"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"Produces data frame 'Weight' 'Fecundity' number 'Survivors' 'Spawners' total 'Biomass' 'Eggs' 'Age' class.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"","code":"ypr_tabulate_biomass(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"population object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"data frame","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"","code":"ypr_tabulate_biomass(ypr_population()) #> # A tibble: 20 × 8 #> Age Length Weight Fecundity Survivors Spawners Biomass Eggs #> #> 1 1 13.9 27.0 27.0 0.186 5.82e-57 5.02 7.86e-56 #> 2 2 25.9 174. 174. 0.149 4.32e-30 25.9 3.76e-28 #> 3 3 36.2 476. 476. 0.119 1.24e-15 56.6 2.95e-13 #> 4 4 45.1 918. 918. 0.0951 3.29e- 6 87.4 1.51e- 3 #> 5 5 52.8 1469. 1469. 0.0761 7.58e- 2 112. 5.56e+ 1 #> 6 6 59.3 2090. 2090. 0.0488 4.88e- 2 102. 5.10e+ 1 #> 7 7 65.0 2747. 2747. 0.0312 3.12e- 2 85.7 4.29e+ 1 #> 8 8 69.9 3412. 3412. 0.0200 2.00e- 2 68.2 3.41e+ 1 #> 9 9 74.1 4065. 4065. 0.0128 1.28e- 2 52.0 2.60e+ 1 #> 10 10 77.7 4689. 4689. 0.00818 8.18e- 3 38.4 1.92e+ 1 #> 11 11 80.8 5274. 5274. 0.00524 5.24e- 3 27.6 1.38e+ 1 #> 12 12 83.5 5816. 5816. 0.00335 3.35e- 3 19.5 9.74e+ 0 #> 13 13 85.8 6310. 6310. 0.00214 2.14e- 3 13.5 6.77e+ 0 #> 14 14 87.8 6758. 6758. 0.00137 1.37e- 3 9.28 4.64e+ 0 #> 15 15 89.5 7160. 7160. 0.000878 8.78e- 4 6.29 3.14e+ 0 #> 16 16 90.9 7518. 7518. 0.000562 5.62e- 4 4.23 2.11e+ 0 #> 17 17 92.2 7836. 7836. 0.000360 3.60e- 4 2.82 1.41e+ 0 #> 18 18 93.3 8116. 8116. 0.000230 2.30e- 4 1.87 9.34e- 1 #> 19 19 94.2 8363. 8363. 0.000147 1.47e- 4 1.23 6.16e- 1 #> 20 20 95.0 8580. 8580. 0.0000943 9.43e- 5 0.809 4.05e- 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Fish Numbers — ypr_tabulate_fish","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"Produces data frame number fish 'Survivors', 'Spawners', 'Caught', 'Harvested', 'Released' 'HandlingMortalities' categories 'Length', 'Age' 'Weight' class 'Ecotype' (NA applicable)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"","code":"ypr_tabulate_fish(population, x = \"Age\", binwidth = 1L)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"population object class ypr_population(). x object coerce. binwidth positive integer width bins grouping.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"data frame","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"","code":"ypr_tabulate_fish(ypr_population()) #> # A tibble: 20 × 8 #> Age Survivors Spawners Caught Harvested Released HandlingMortalities #> #> 1 1 0.186 5.82e-57 1.16e-57 1.16e-57 0 0 #> 2 2 0.149 4.32e-30 8.64e-31 8.64e-31 0 0 #> 3 3 0.119 1.24e-15 2.48e-16 2.48e-16 0 0 #> 4 4 0.0951 3.29e- 6 6.58e- 7 6.58e- 7 0 0 #> 5 5 0.0761 7.58e- 2 1.52e- 2 1.52e- 2 0 0 #> 6 6 0.0488 4.88e- 2 9.75e- 3 9.75e- 3 0 0 #> 7 7 0.0312 3.12e- 2 6.24e- 3 6.24e- 3 0 0 #> 8 8 0.0200 2.00e- 2 3.99e- 3 3.99e- 3 0 0 #> 9 9 0.0128 1.28e- 2 2.56e- 3 2.56e- 3 0 0 #> 10 10 0.00818 8.18e- 3 1.64e- 3 1.64e- 3 0 0 #> 11 11 0.00524 5.24e- 3 1.05e- 3 1.05e- 3 0 0 #> 12 12 0.00335 3.35e- 3 6.70e- 4 6.70e- 4 0 0 #> 13 13 0.00214 2.14e- 3 4.29e- 4 4.29e- 4 0 0 #> 14 14 0.00137 1.37e- 3 2.74e- 4 2.74e- 4 0 0 #> 15 15 0.000878 8.78e- 4 1.76e- 4 1.76e- 4 0 0 #> 16 16 0.000562 5.62e- 4 1.12e- 4 1.12e- 4 0 0 #> 17 17 0.000360 3.60e- 4 7.20e- 5 7.20e- 5 0 0 #> 18 18 0.000230 2.30e- 4 4.61e- 5 4.61e- 5 0 0 #> 19 19 0.000147 1.47e- 4 2.95e- 5 2.95e- 5 0 0 #> 20 20 0.0000943 9.43e- 5 1.89e- 5 1.89e- 5 0 0 #> # ℹ 1 more variable: Ecotype "},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Population Parameters — ypr_tabulate_parameters","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"Tabulate Population Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"","code":"ypr_tabulate_parameters(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"population object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"table population parameters","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"","code":"ypr_tabulate_parameters(ypr_population()) #> # A tibble: 32 × 3 #> Parameter Value Description #> #> 1 tmax 20 \"The maximum age (yr).\" #> 2 k 0.15 \"The VB growth coefficient (yr-1).\" #> 3 Linf 100 \"The VB mean maximum length (cm).\" #> 4 t0 0 \"The (theoretical) age at zero length (yr).\" #> 5 k2 0.15 \"The VB growth coefficient after length L2 (yr-1).\" #> 6 Linf2 100 \"The VB mean maximum length after length L2 (cm).\" #> 7 L2 1000 \"The length (or age if negative) at which growth switches … #> 8 Wb 3 \"The weight (as a function of length) scaling exponent.\" #> 9 Ls 50 \"The length (or age if negative) at which 50 % mature (cm … #> 10 Sp 100 \"The maturity (as a function of length) power.\" #> # ℹ 22 more rows"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":null,"dir":"Reference","previous_headings":"","what":"Life-History Schedule — ypr_tabulate_schedule","title":"Life-History Schedule — ypr_tabulate_schedule","text":"Generates life-history schedule age population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Life-History Schedule — ypr_tabulate_schedule","text":"","code":"ypr_tabulate_schedule(object, ...) # S3 method for class 'ypr_population' ypr_tabulate_schedule(object, ...) # S3 method for class 'ypr_ecotypes' ypr_tabulate_schedule(object, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Life-History Schedule — ypr_tabulate_schedule","text":"object population populations. ... Unused parameters.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Life-History Schedule — ypr_tabulate_schedule","text":"tibble life-history schedule age.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Life-History Schedule — ypr_tabulate_schedule","text":"ypr_tabulate_schedule(ypr_population): Tabulate Schedule ypr_tabulate_schedule(ypr_ecotypes): Tabulate Schedule","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Life-History Schedule — ypr_tabulate_schedule","text":"","code":"ypr_tabulate_schedule(ypr_population()) #> # A tibble: 20 × 11 #> Age Length Weight Fecundity Spawning NaturalMortality Vulnerability #> #> 1 1 13.9 27.0 27.0 3.13e-56 0.2 3.13e-56 #> 2 2 25.9 174. 174. 2.91e-29 0.2 2.91e-29 #> 3 3 36.2 476. 476. 1.04e-14 0.2 1.04e-14 #> 4 4 45.1 918. 918. 3.46e- 5 0.2 3.46e- 5 #> 5 5 52.8 1469. 1469. 9.95e- 1 0.2 9.95e- 1 #> 6 6 59.3 2090. 2090. 1.00e+ 0 0.2 1.00e+ 0 #> 7 7 65.0 2747. 2747. 1.00e+ 0 0.2 1.00e+ 0 #> 8 8 69.9 3412. 3412. 1.00e+ 0 0.2 1.00e+ 0 #> 9 9 74.1 4065. 4065. 1 e+ 0 0.2 1 e+ 0 #> 10 10 77.7 4689. 4689. 1 e+ 0 0.2 1 e+ 0 #> 11 11 80.8 5274. 5274. 1 e+ 0 0.2 1 e+ 0 #> 12 12 83.5 5816. 5816. 1 e+ 0 0.2 1 e+ 0 #> 13 13 85.8 6310. 6310. 1 e+ 0 0.2 1 e+ 0 #> 14 14 87.8 6758. 6758. 1 e+ 0 0.2 1 e+ 0 #> 15 15 89.5 7160. 7160. 1 e+ 0 0.2 1 e+ 0 #> 16 16 90.9 7518. 7518. 1 e+ 0 0.2 1 e+ 0 #> 17 17 92.2 7836. 7836. 1 e+ 0 0.2 1 e+ 0 #> 18 18 93.3 8116. 8116. 1 e+ 0 0.2 1 e+ 0 #> 19 19 94.2 8363. 8363. 1 e+ 0 0.2 1 e+ 0 #> 20 20 95.0 8580. 8580. 1 e+ 0 0.2 1 e+ 0 #> # ℹ 4 more variables: Retention , FishingMortality , #> # Survivorship , FishedSurvivorship ypr_tabulate_schedule(ypr_ecotypes(Linf = c(10, 20))) #> # A tibble: 40 × 13 #> Age Length Weight Fecundity Spawning NaturalMortality Vulnerability #> #> 1 1 1.39 0.0270 0.0270 3.13e-156 0.2 3.13e-156 #> 2 2 2.59 0.174 0.174 2.91e-129 0.2 2.91e-129 #> 3 3 3.62 0.476 0.476 1.04e-114 0.2 1.04e-114 #> 4 4 4.51 0.918 0.918 3.46e-105 0.2 3.46e-105 #> 5 5 5.28 1.47 1.47 2.17e- 98 0.2 2.17e- 98 #> 6 6 5.93 2.09 2.09 2.75e- 93 0.2 2.75e- 93 #> 7 7 6.50 2.75 2.75 2.50e- 89 0.2 2.50e- 89 #> 8 8 6.99 3.41 3.41 3.46e- 86 0.2 3.46e- 86 #> 9 9 7.41 4.06 4.06 1.18e- 83 0.2 1.18e- 83 #> 10 10 7.77 4.69 4.69 1.37e- 81 0.2 1.37e- 81 #> # ℹ 30 more rows #> # ℹ 6 more variables: Retention , FishingMortality , #> # Survivorship , FishedSurvivorship , Ecotype , #> # Proportion "},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"Tabulate Stock-Recruitment Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"","code":"ypr_tabulate_sr(object, ...) # Default S3 method ypr_tabulate_sr( object, Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... ) # S3 method for class 'ypr_populations' ypr_tabulate_sr( object, Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"object population populations. ... Unused parameters. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. flag specifying whether include parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"data.frame stock-recruitment parameters.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"ypr_tabulate_sr(default): Tabulate Stock-Recruitment Parameters ypr_tabulate_sr(ypr_populations): Tabulate Stock-Recruitment Parameters","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"","code":"ypr_tabulate_sr(ypr_population()) # Beverton-Holt #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 2386. 0.667 1.33 3600. #> 2 actual 0.2 0.2 272. 0.186 0.211 2580. #> 3 optimal 0.115 0.115 853. 0.417 0.582 2933. ypr_tabulate_sr(ypr_population(BH = 0L)) # Ricker #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 3563. 0.995 1.98 3600. #> 2 actual 0.2 0.2 667. 0.455 0.517 2580. #> 3 optimal 0.135 0.135 1485. 0.787 1.04 2844. ypr_tabulate_sr(ypr_populations(Rk = c(2.5, 4.6))) #> # A tibble: 6 × 8 #> Type pi u Eggs Recruits Spawners Fecundity Rk #> #> 1 unfished 0 0 2148. 0.6 1.19 3600. 2.5 #> 2 actual 0.2 0.2 33.6 0.0230 0.0261 2580. 2.5 #> 3 optimal 0.0936 0.0936 818. 0.364 0.538 3041. 2.5 #> 4 unfished 0 0 2801. 0.783 1.56 3600. 4.6 #> 5 actual 0.2 0.2 687. 0.469 0.533 2580. 4.6 #> 6 optimal 0.171 0.171 851. 0.522 0.633 2688. 4.6"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Yield — ypr_tabulate_yield","title":"Tabulate Yield — ypr_tabulate_yield","text":"Tabulate Yield","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Yield — ypr_tabulate_yield","text":"","code":"ypr_tabulate_yield(object, ...) # Default S3 method ypr_tabulate_yield( object, Ly = 0, harvest = TRUE, biomass = FALSE, type = \"both\", all = FALSE, ... ) # S3 method for class 'ypr_populations' ypr_tabulate_yield( object, Ly = 0, harvest = TRUE, biomass = FALSE, type = \"both\", all = FALSE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Yield — ypr_tabulate_yield","text":"object population populations. ... Unused parameters. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. type string indicating whether include '' just 'actual' 'optimal' yield. flag specifying whether include parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Yield — ypr_tabulate_yield","text":"data frame.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Tabulate Yield — ypr_tabulate_yield","text":"ypr_tabulate_yield(default): Tabulate Yield ypr_tabulate_yield(ypr_populations): Tabulate Yield","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Yield — ypr_tabulate_yield","text":"","code":"ypr_tabulate_yield(ypr_population()) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.2 0.2 0.0422 6.77 62.1 2580. 2.12 #> 2 optimal 0.115 0.115 0.0670 7.36 64.6 2933. 1.16 ypr_tabulate_yield(ypr_populations(Rk = c(3, 5))) #> # A tibble: 4 × 9 #> Type pi u Yield Age Length Weight Effort Rk #> #> 1 actual 0.2 0.2 0.0422 6.77 62.1 2580. 2.12 3 #> 2 optimal 0.115 0.115 0.0670 7.36 64.6 2933. 1.16 3 #> 3 actual 0.2 0.2 0.116 6.77 62.1 2580. 2.12 5 #> 4 optimal 0.183 0.183 0.117 6.87 62.6 2641. 1.92 5"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Yields — ypr_tabulate_yields","title":"Tabulate Yields — ypr_tabulate_yields","text":"Tabulate Yields","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Yields — ypr_tabulate_yields","text":"","code":"ypr_tabulate_yields(object, ...) # Default S3 method ypr_tabulate_yields( object, pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... ) # S3 method for class 'ypr_populations' ypr_tabulate_yields( object, pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Yields — ypr_tabulate_yields","text":"object population populations. ... Unused parameters. pi vector probabilities capture calculate yield . Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. flag specifying whether include parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Yields — ypr_tabulate_yields","text":"data frame.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Tabulate Yields — ypr_tabulate_yields","text":"ypr_tabulate_yields(default): Tabulate Yields ypr_tabulate_yields(ypr_populations): Tabulate Yields","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Yields — ypr_tabulate_yields","text":"","code":"ypr_tabulate_yields(ypr_population()) #> # A tibble: 100 × 7 #> pi u Yield Age Length Weight Effort #> #> 1 0 0 0 NA NA NA 0 #> 2 0.0101 0.0101 0.0126 8.42 68.5 3532. 0.0964 #> 3 0.0202 0.0202 0.0236 8.30 68.0 3466. 0.194 #> 4 0.0303 0.0303 0.0331 8.18 67.6 3402. 0.292 #> 5 0.0404 0.0404 0.0413 8.07 67.2 3339. 0.391 #> 6 0.0505 0.0505 0.0482 7.96 66.8 3279. 0.492 #> 7 0.0606 0.0606 0.0539 7.86 66.5 3220. 0.593 #> 8 0.0707 0.0707 0.0585 7.76 66.1 3163. 0.696 #> 9 0.0808 0.0808 0.0620 7.66 65.7 3108. 0.800 #> 10 0.0909 0.0909 0.0646 7.57 65.4 3054. 0.905 #> # ℹ 90 more rows ypr_tabulate_yields( ypr_populations( Rk = c(3, 5) ), pi = seq(0, 1, length.out = 10) ) #> # A tibble: 20 × 8 #> pi u Yield Age Length Weight Effort Rk #> #> 1 0 0 0 NA NA NA 0 3 #> 2 0.111 0.111 0.0669 7.40 64.7 2953. 1.12 3 #> 3 0.222 0.222 0.0288 6.64 61.6 2504. 2.39 3 #> 4 0.333 0.333 0 NA NA NA 3.85 3 #> 5 0.444 0.444 0 NA NA NA 5.58 3 #> 6 0.556 0.556 0 NA NA NA 7.70 3 #> 7 0.667 0.667 0 NA NA NA 10.4 3 #> 8 0.778 0.778 0 NA NA NA 14.3 3 #> 9 0.889 0.889 0 NA NA NA 20.9 3 #> 10 1 1 0 NA NA NA Inf 3 #> 11 0 0 0 NA NA NA 0 5 #> 12 0.111 0.111 0.103 7.40 64.7 2953. 1.12 5 #> 13 0.222 0.222 0.114 6.64 61.6 2504. 2.39 5 #> 14 0.333 0.333 0.0750 6.15 59.3 2196. 3.85 5 #> 15 0.444 0.444 0.00589 5.80 57.5 1979. 5.58 5 #> 16 0.556 0.556 0 NA NA NA 7.70 5 #> 17 0.667 0.667 0 NA NA NA 10.4 5 #> 18 0.778 0.778 0 NA NA NA 14.3 5 #> 19 0.889 0.889 0 NA NA NA 20.9 5 #> 20 1 1 0 NA NA NA Inf 5 ypr_tabulate_yields(ypr_ecotypes(Linf = c(10, 20))) #> # A tibble: 100 × 7 #> pi u Yield Age Length Weight Effort #> #> 1 0 0 0 NA NA NA 0 #> 2 0.0101 0.0101 9.03e-47 19.2 18.9 67.2 0.0964 #> 3 0.0202 0.0202 1.81e-46 19.2 18.9 67.2 0.194 #> 4 0.0303 0.0303 2.71e-46 19.2 18.9 67.2 0.292 #> 5 0.0404 0.0404 3.61e-46 19.2 18.9 67.2 0.391 #> 6 0.0505 0.0505 4.52e-46 19.2 18.9 67.2 0.492 #> 7 0.0606 0.0606 5.42e-46 19.2 18.9 67.2 0.593 #> 8 0.0707 0.0707 6.32e-46 19.2 18.9 67.2 0.696 #> 9 0.0808 0.0808 7.22e-46 19.2 18.9 67.2 0.800 #> 10 0.0909 0.0909 8.13e-46 19.2 18.9 67.2 0.905 #> # ℹ 90 more rows"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":null,"dir":"Reference","previous_headings":"","what":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"Update YPR Object Currently just works scalar parameters populations ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"","code":"ypr_update(x, ...) # S3 method for class 'ypr_population' ypr_update(x, ...) # S3 method for class 'ypr_populations' ypr_update(x, ...) # S3 method for class 'ypr_ecotypes' ypr_update(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"x population, populations ecotypes object update. ... One parameter values ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"ypr_update(ypr_population): Update Population Parameters ypr_update(ypr_populations): Update Populations Parameters ypr_update(ypr_ecotypes): Update Populations Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"","code":"ypr_update(ypr_population(), Rk = 2.5) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_update(ypr_populations(Rk = c(2.5, 4)), Rk = 2.5) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_update(ypr_ecotypes(Linf = c(2.5, 4)), k = 1.5) #> tmax: 20 #> k: 1.5 #> Linf: 2.5, 4 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Linf_2_5, Linf_4"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":null,"dir":"Reference","previous_headings":"","what":"Yield — ypr_yield","title":"Yield — ypr_yield","text":"Calculates yield population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Yield — ypr_yield","text":"","code":"ypr_yield(object, Ly = 0, harvest = TRUE, biomass = FALSE, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Yield — ypr_yield","text":"object population populations. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. ... Unused parameters.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Yield — ypr_yield","text":"yield number fish biomass.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Yield — ypr_yield","text":"default, Rmax = 1 number individuals proportion recruits carrying capacity. yield given terms biomass (kg) scaling also depends value Wa (g).","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Yield — ypr_yield","text":"","code":"ypr_yield(ypr_population()) #> [1] 0.04220691 #> attr(,\"Age\") #> [1] 6.7687 #> attr(,\"Length\") #> [1] 62.13068 #> attr(,\"Weight\") #> [1] 2580.272 #> attr(,\"Effort\") #> [1] 2.117905 ypr_yield(ypr_ecotypes(Linf = c(100, 200))) #> [1] 0 #> attr(,\"Age\") #> [1] NA #> attr(,\"Length\") #> [1] NA #> attr(,\"Weight\") #> [1] NA #> attr(,\"Effort\") #> [1] 2.117905"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":null,"dir":"Reference","previous_headings":"","what":"Yields — ypr_yields","title":"Yields — ypr_yields","text":"Calculates yield(s) population based one capture rates.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Yields — ypr_yields","text":"","code":"ypr_yields( object, pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Yields — ypr_yields","text":"object population populations. pi vector probabilities capture calculate yield . Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Yields — ypr_yields","text":"numeric vector yields.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Yields — ypr_yields","text":"","code":"pi <- seq(0, 1, length.out = 30) plot(pi, ypr_yields(ypr_population(), pi), type = \"l\")"},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-0609000","dir":"Changelog","previous_headings":"","what":"ypr 0.6.0.9000","title":"ypr 0.6.0.9000","text":"previous version.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-060","dir":"Changelog","previous_headings":"","what":"ypr 0.6.0","title":"ypr 0.6.0","text":"CRAN release: 2022-08-29 Rk now egg tR survival 0 1.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-052","dir":"Changelog","previous_headings":"","what":"ypr 0.5.2","title":"ypr 0.5.2","text":"CRAN release: 2021-07-03 Internal changes .","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-051","dir":"Changelog","previous_headings":"","what":"ypr 0.5.1","title":"ypr 0.5.1","text":"CRAN release: 2020-07-10 House-keeping.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-050","dir":"Changelog","previous_headings":"","what":"ypr 0.5.0","title":"ypr 0.5.0","text":"CRAN release: 2020-03-18 Pass yield parameters Ly, harvest biomass ypr_report(). Removed suggests dependency checkr.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-040","dir":"Changelog","previous_headings":"","what":"ypr 0.4.0","title":"ypr 0.4.0","text":"CRAN release: 2020-01-13","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"population-parameters-0-4-0","dir":"Changelog","previous_headings":"","what":"Population Parameters","title":"ypr 0.4.0","text":"Replaced parameters M (annual instantaneous natural mortality rate) Mb (annual instantaneous natural mortality rate (function length) scaling exponent) A0 (initial post age tR density independent mortality probability) n (annual natural mortality rate age tR length Ln) nL (annual natural mortality rate length Ln) Ln (length natural mortality rate switches n nA) Added parameters k2, Linf2 L2 allow biphasic growth. Set Lp value 1000 opposed Linf. Set Ls Lv arguments 50 opposed Linf/2. Allow L2, Ln, Ls Lv also take ages (negative values).","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"populations-0-4-0","dir":"Changelog","previous_headings":"","what":"Population(s)","title":"ypr 0.4.0","text":"Added expand = TRUE argument ypr_populations() allow control combinations. Added ypr_populations_expand() create combinations parameters. Added ypr_populations_update() (well update.ypr_population() update.ypr_populations()). ypr_populations longer requires names. Added ypr_population_names() allow user generate names. Added as_ypr_populations.data.frame(). Added data.frame.ypr_population() data.frame.ypr_populations(). Added ypr_age_at_length() get ages specific lengths given population. Added ypr_length_at_age() get lengths specific ages given population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"population-reports-0-4-0","dir":"Changelog","previous_headings":"","what":"Population Reports","title":"ypr 0.4.0","text":"Added description = \"\" argument ypr_report() allow user describe report. ypr_report() now starts table parameter values parameter descriptions. Added view = FALSE argument ypr_report() allow user view report browser. Added ask = TRUE argument ypr_report() ask overwriting creating file. Deprecated requirement provide file extension ypr_report(). Soft deprecated ypr_schedule() ypr_tabulate_schedule().","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"plots-0-4-0","dir":"Changelog","previous_headings":"","what":"Plots","title":"ypr 0.4.0","text":"Added plot biomass eggs report. Added percent = FALSE argument ypr_plot_fish()","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"tables-0-4-0","dir":"Changelog","previous_headings":"","what":"Tables","title":"ypr 0.4.0","text":"Added ypr_tabulate_biomass() easily calculate total biomass eggs. Renamed column HandlingMortality HandlingMortalities ypr_tabulate_fish() ypr_plot_fish(). Renamed column Spawning Spawners ypr_tabulate_fish() ypr_plot_fish().","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"bug-fixes-0-4-0","dir":"Changelog","previous_headings":"","what":"Bug Fixes","title":"ypr 0.4.0","text":"Improved handling unsustainable populations (longer negative fish numbers).","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-031","dir":"Changelog","previous_headings":"","what":"ypr 0.3.1","title":"ypr 0.3.1","text":"CRAN release: 2019-04-26 ypr_populations() now generates names Fixed Quesnel Lake Trout Rainbow Trout mix ","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-030","dir":"Changelog","previous_headings":"","what":"ypr 0.3.0","title":"ypr 0.3.0","text":"CRAN release: 2018-11-26 Now uses q instead Ea Eb effort Parameter Rk now greater >= 1","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-020","dir":"Changelog","previous_headings":"","what":"ypr 0.2.0","title":"ypr 0.2.0","text":"Added ypr_exploitation() convert capture probabilities exploitation probabilities. Added ypr_report() generate Rmd file population. Can now pass Rk egg recruit survival (low density). Set default value Wa 0.01. Added ypr_populations() generate combinations parameters. Made ypr_tabulate_sr(), ypr_tabulate_yield(), ypr_tabulate_yields(), ypr_plot_yield() generic definitions ypr_population ypr_populations objects. Added scaling parameter A0 initial interval mortality recruits. Added scaling parameters Ea Eb allow plots yield per effort. Added Age, Length, Weight Effort ypr_tabulate_yield() added ypr_tabulate_yields() Added y arg ypr_plot_yield() allow plotting mean age, length, weight, effort yield per effort exploitation capture probability. Added ypr_plot_histogram() plot frequency distributions catch, spawners lake age, length weight bins. Added ypr_tabulate_parameters() get table parameters, values descriptions ypr_detabulate_parameters() convert back population object. Added ypr_tabulate_sr() get table eggs recruits unfished, actual optimal rates. Added print.ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-010","dir":"Changelog","previous_headings":"","what":"ypr 0.1.0","title":"ypr 0.1.0","text":"Added Mb scale mortality length BH distinguish Beverton-Holt Ricker curves es probability mature fish spawning Sm spawning mortality probability Sp spawning power vulnerability power Vp slot limit non-complicance parameter Nc scaling parameter R0. Added ypr_population_update() update population parameters. Added ypr_yield_tabulate() tabulate actual optimal yields. Added ypr_sr() get stock recruitment parameters ypr_plot_sr() plot. Added ypr_inst2inter() ypr_inter2instant() convert mortality rates. Switched nu M R0 Rmax. Switched yield parameters harvest biomass FALSE default. Renamed Wa b Wb eta Hm mu pi Rt tR. Removed Capture (covered single value) TotalMortality schedule added Spawning.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-001","dir":"Changelog","previous_headings":"","what":"ypr 0.0.1","title":"ypr 0.0.1","text":"Initial Release","code":""}] +[{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement [INSERT CONTACT METHOD]. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.0, available https://www.contributor-covenant.org/version/2/0/ code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https:// www.contributor-covenant.org/translations.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":null,"dir":"","previous_headings":"","what":"Contributing to ypr","title":"Contributing to ypr","text":"outlines propose change ypr.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"fixing-typos","dir":"","previous_headings":"","what":"Fixing typos","title":"Contributing to ypr","text":"can fix typos, spelling mistakes, grammatical errors documentation directly using GitHub web interface, long changes made source file. generally means ’ll need edit roxygen2 comments .R, .Rd file. can find .R file generates .Rd reading comment first line.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"bigger-changes","dir":"","previous_headings":"","what":"Bigger changes","title":"Contributing to ypr","text":"want make bigger change, ’s good idea first file issue make sure someone team agrees ’s needed. ’ve found bug, please file issue illustrates bug minimal reprex (also help write unit test, needed).","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"pull-request-process","dir":"","previous_headings":"Bigger changes","what":"Pull request process","title":"Contributing to ypr","text":"Fork package clone onto computer. haven’t done , recommend using usethis::create_from_github(\"\", fork = TRUE). Install development dependences devtools::install_dev_deps(), make sure package passes R CMD check running devtools::check(). R CMD check doesn’t pass cleanly, ’s good idea ask help continuing. Create Git branch pull request (PR). recommend using usethis::pr_init(\"brief-description--change\"). Make changes, commit git, create PR running usethis::pr_push(), following prompts browser. title PR briefly describe change. body PR contain Fixes #issue-number. Begin commit merge messages - indicate user facing changes included NEWS.md. use fledge automatically generate NEWS.md file.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"code-style","dir":"","previous_headings":"Bigger changes","what":"Code style","title":"Contributing to ypr","text":"New code follow tidyverse style guide. can use styler package apply styles, please don’t restyle code nothing PR. use roxygen2, Markdown syntax, documentation. use testthat unit tests. Contributions test cases included easier accept.","code":""},{"path":"https://poissonconsulting.github.io/ypr/CONTRIBUTING.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Contributing to ypr","text":"Please note ypr project released Contributor Code Conduct. contributing project agree abide terms.","code":""},{"path":"https://poissonconsulting.github.io/ypr/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"MIT License","title":"MIT License","text":"Copyright (c) 2020 Poisson Consulting Permission hereby granted, free charge, person obtaining copy software associated documentation files (“Software”), deal Software without restriction, including without limitation rights use, copy, modify, merge, publish, distribute, sublicense, /sell copies Software, permit persons Software furnished , subject following conditions: copyright notice permission notice shall included copies substantial portions Software. SOFTWARE PROVIDED “”, WITHOUT WARRANTY KIND, EXPRESS IMPLIED, INCLUDING LIMITED WARRANTIES MERCHANTABILITY, FITNESS PARTICULAR PURPOSE NONINFRINGEMENT. EVENT SHALL AUTHORS COPYRIGHT HOLDERS LIABLE CLAIM, DAMAGES LIABILITY, WHETHER ACTION CONTRACT, TORT OTHERWISE, ARISING , CONNECTION SOFTWARE USE DEALINGS SOFTWARE.","code":""},{"path":"https://poissonconsulting.github.io/ypr/SUPPORT.html","id":null,"dir":"","previous_headings":"","what":"Getting help with ypr","title":"Getting help with ypr","text":"Thanks using ypr! filing issue, places explore pieces put together make process smooth possible.","code":""},{"path":"https://poissonconsulting.github.io/ypr/SUPPORT.html","id":"make-sure-its-new","dir":"","previous_headings":"","what":"Make sure its new","title":"Getting help with ypr","text":"opening new issue, sure search issues pull requests make sure bug hasn’t reported /already fixed development version. default, search pre-populated :issue :open. can edit qualifiers (e.g. :pr, :closed) needed. example, ’d simply remove :open search issues repo, open closed.","code":""},{"path":"https://poissonconsulting.github.io/ypr/SUPPORT.html","id":"make-a-reprex","dir":"","previous_headings":"","what":"Make a reprex","title":"Getting help with ypr","text":"Start making minimal reproducible example using reprex package. haven’t heard used reprex , ’re treat! Seriously, reprex make R-question-asking endeavors easier (pretty insane ROI five ten minutes ’ll take learn ’s ). additional reprex pointers, check Get help! section tidyverse site.","code":""},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"ecotypes","dir":"Articles","previous_headings":"","what":"Ecotypes","title":"Ecotypes","text":"ypr package population considered group interbreeding fish indistinguishable anglers. Ecotypes groups individuals population different life-history strategies. Consequently, ecotypes must share key fishery (pi, Llo, Lup, Nc, rho, Hm q) stock recruitment (BH, RK, tR Rmax) parameters.y use yield-per-recruit approach also necessary assume relative proportion recruits (RPR) adopting life-history strategy independent size composition parental stock.","code":""},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"two-ecotypes","dir":"Articles","previous_headings":"","what":"Two Ecotypes","title":"Ecotypes","text":"Consider population smaller ecotype second larger ecotype delays maturation order achieve sufficient size switch piscivory allows grow much larger.","code":"library(ypr) library(ggplot2) # for plotting ecotypes <- ypr_ecotypes( Linf2 = 200, L2 = c(100, 50), Ls = c(50, 75), pi = 0.05, names = c(\"small\", \"large\"), RPR = c(0.8, 0.2) ) ypr_plot_schedule(ecotypes) + scale_color_manual(values = c(\"black\", \"blue\")) ypr_plot_schedule(ecotypes, x = \"Age\", y = \"Spawning\") + scale_color_manual(values = c(\"black\", \"blue\"))"},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"fish","dir":"Articles","previous_headings":"Two Ecotypes","what":"Fish","title":"Ecotypes","text":"","code":"ypr_plot_fish(ecotypes, color = \"white\") + scale_fill_manual(values = c(\"black\", \"blue\")) ypr_plot_fish(ecotypes, x = \"Length\", y = \"Caught\", color = \"white\", binwidth = 15) + scale_fill_manual(values = c(\"black\", \"blue\"))"},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"stock-recruitment","dir":"Articles","previous_headings":"Two Ecotypes","what":"Stock-Recruitment","title":"Ecotypes","text":"","code":"ypr_plot_sr(ecotypes, biomass = TRUE) ypr_tabulate_sr(ecotypes, biomass = TRUE) #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 4085. 0.667 1.27 6431. #> 2 actual 0.05 0.05 2483. 0.549 0.879 5653. #> 3 optimal 0.0833 0.0833 1705. 0.455 0.656 5200."},{"path":"https://poissonconsulting.github.io/ypr/articles/ecotypes.html","id":"yield","dir":"Articles","previous_headings":"Two Ecotypes","what":"Yield","title":"Ecotypes","text":"","code":"ypr_tabulate_yield(ecotypes, biomass = TRUE) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.05 0.05 0.253 7.97 73.6 5474. 0.487 #> 2 optimal 0.0833 0.0833 0.290 7.64 71.9 5026. 0.825 ypr_plot_yield(ecotypes, biomass = TRUE)"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"introduction","dir":"Articles","previous_headings":"","what":"Introduction","title":"Get Started with ypr","text":"Fish born, grow, reproduce die – whether natural causes fishing. ’s . Modelers just use complicated (complicated) math iron details. Cooper (2006) Equilibrium based yield per recruit (YPR) methods (Walters Martell 2004) estimate capture rate optimizes yield assumption stochasticity density-dependence captured stock-recruitment relationship. remaining population processes growth, reproduction death captured series relatively straight-forward deterministic equations. Table 1. 32 parameters default values descriptions.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"length","dir":"Articles","previous_headings":"Growth","what":"Length","title":"Get Started with ypr","text":"ypr length (cm) age (t) assumed follow Von Bertalanffy growth curve L = L_{\\infty} \\cdot (1 - \\exp(-k \\cdot (t-t_0))) can biphasic","code":"population <- ypr_population() ypr_plot_schedule(population, \"Age\", \"Length\") ypr_plot_schedule(ypr_population_update(population, L2 = 75, Linf2 = 200), \"Age\", \"Length\") #> Warning: `ypr_population_update()` was deprecated in ypr 0.5.3. #> ℹ Please use `ypr_update()` instead. #> This warning is displayed once every 8 hours. #> Call `lifecycle::last_lifecycle_warnings()` to see where this warning was #> generated."},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"weight","dir":"Articles","previous_headings":"Growth","what":"Weight","title":"Get Started with ypr","text":"weight (W) given length assumed follow classic allometric relationship W = w_\\alpha \\cdot L^{w_\\beta} worth noting w_\\alpha, extrapolated weight (g) 1 cm individual, scaling constant affects estimate yield (calculated terms biomass), ie, affect estimate optimal capture rate.","code":"population <- ypr_population_update(population, Wa = 0.01, Wb = 3) ypr_plot_schedule(population, \"Length\", \"Weight\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"fecundity","dir":"Articles","previous_headings":"Reproduction","what":"Fecundity","title":"Get Started with ypr","text":"fecundity (F) assumed scale allometrically weight according equation F = f_\\alpha \\cdot W^{f_\\beta} f_\\alpha, extrapolated eggs produced 1 g female, scaling constant effect yield optimal capture rate.","code":"population <- ypr_population_update(population, fa = 1, fb = 1) ypr_plot_schedule(population, \"Weight\", \"Fecundity\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"spawning","dir":"Articles","previous_headings":"Reproduction","what":"Spawning","title":"Get Started with ypr","text":"probability spawning length L determined equation S = \\frac{L^{S_p}}{L_s^{S_p} + L^{S_p}} \\cdot es","code":"population <- ypr_population_update(population, Ls = 50, Sp = 10, es = 0.8) ypr_plot_schedule(population, \"Length\", \"Spawning\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"natural-mortality","dir":"Articles","previous_headings":"Death","what":"Natural Mortality","title":"Get Started with ypr","text":"default natural annual interval mortality rate (n) assumed constant although like growth can vary biphasically natural mortality rate can also affected spawning mortality","code":"ypr_plot_schedule(population, \"Length\", \"NaturalMortality\") ypr_plot_schedule(ypr_population_update(population, nL = 0.15, Ln = 60), \"Length\", \"NaturalMortality\") population <- ypr_population_update(population, Sm = 0.5) ypr_plot_schedule(population, \"Length\", \"NaturalMortality\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"fishing-mortality","dir":"Articles","previous_headings":"Death","what":"Fishing Mortality","title":"Get Started with ypr","text":"vulnerability capture (V) assumed vary length follows V = \\frac{L^{V_p}}{L_v^{V_p} + L^{V_p}} V_p 100 vulnerability effectively knife-edged. probabilty retained captured (R) depends release rate (\\rho), slot limits (L_{lo} L_{}) non-compliance limits (N_c) fishing mortality (U) depends V, R probability capture fully vulnerable (pi) well hooking mortality (H_m) U = V \\cdot \\pi \\cdot R + V \\cdot \\pi \\cdot (1 - R) \\cdot H_m calculation assumes released fish recaught year.","code":"population <- ypr_population_update(population, Lv = 50, Vp = 50) ypr_plot_schedule(population, \"Length\", \"Vulnerability\") population <- ypr_population_update(population, rho = 0.5, Llo = 40, Lup = 70, Nc = 0.1) ypr_plot_schedule(population, \"Length\", \"Retention\") population <- ypr_population_update(population, pi = 0.3, Hm = 0.2) ypr_plot_schedule(population, \"Length\", \"FishingMortality\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"recruitment","dir":"Articles","previous_headings":"","what":"Recruitment","title":"Get Started with ypr","text":"growth, reproduction death defined, final task estimate recruitment (birth) rate. requires lifetime number spawners per spawner low density (R_k) recruitment age (R_t; default 1) defined. recruitment follows Beverton-Holt (BH = 1) curve R = \\frac{\\alpha \\cdot E}{(\\beta \\cdot E + 1)} E annual eggs (stock) R annual recruits age R_t. Ricker curve (BH = 0) relationship follows R = \\alpha \\cdot E \\cdot \\exp (-\\beta \\cdot E) number recruits carrying capacity (R_\\text{max}) scaling constant affects estimate yield. calculating recruitment important introduce concept (unfished) survivorship (lx_a) probability recruit surviving age absence fish mortality. unfished survivorship (lx_a) defined recursively lx_{R_t} = 1, lx_a = lx_{-1} \\cdot (1-N_{-1}) \\;\\text{}\\; > R_t N_a annual interval natural mortality age . fished survivorship (lx_a^F) lx_{R_t}^F = 1, lx_a^F = lx_{-1}^F \\cdot (1 - (1 - N_{-1}) \\cdot (1 - U_{-1})) \\;\\text{}\\; > R_t lifetime number eggs deposited per (unfished) recruit (\\phi) just \\phi = \\sum_{= R_t}^{t_\\text{max}} lx_a \\cdot F_a/2 \\cdot S_a t_\\text{max} maximum age considered (default 20) F_a fecundity age divided two sex ratio assumed 1:1 S_a probability spawning. fished equivalent denoted \\phi_F. important realize unfished equilibrium annual number recruits (R_0) related annual egg deposition according following equation E_0 = \\phi \\cdot R_0 definition \\alpha = \\frac{R_k \\cdot R_0}{E_0} = \\frac{R_k}{\\phi} \\beta term Beverton-Holt curve can found rearranging following formula R_0 = \\frac{\\alpha \\cdot \\phi \\cdot R_0}{\\beta \\cdot \\phi \\cdot R_0 + 1} \\beta \\cdot \\phi \\cdot R_0 + 1 = \\alpha \\cdot \\phi \\beta = \\frac{\\alpha \\cdot \\phi - 1}{\\phi \\cdot R_0} equivalent equation Ricker curve arrived follows R_0 = \\alpha \\cdot \\phi \\cdot R_0 \\cdot \\exp (-\\beta \\cdot \\phi \\cdot R_0) \\frac{1}{\\exp (-\\beta \\cdot \\phi \\cdot R_0)} = \\alpha \\cdot \\phi \\beta \\cdot \\phi \\cdot R_0 = \\log(\\alpha \\cdot \\phi) \\beta = \\frac{\\log(\\alpha \\cdot \\phi)}{\\phi \\cdot R_0} number recruits fished equilibrium (R_{0F}) can found Beverton-Holt curve follows R_{0F} = \\frac{\\alpha \\cdot \\phi_F \\cdot R_{0F}}{\\beta \\cdot \\phi_F \\cdot R_{0F} + 1} \\beta \\cdot \\phi_F \\cdot R_{0F} + 1 = \\alpha \\cdot \\phi_F R_{0F} = \\frac{\\alpha \\cdot \\phi_F - 1}{\\beta \\cdot \\phi_F} Ricker R_{0F} = \\alpha \\cdot \\phi_F \\cdot R_{0F} \\cdot \\exp (-\\beta \\cdot \\phi_F \\cdot R_{0F}) \\frac{1}{\\exp(-\\beta \\cdot \\phi_F \\cdot R_{0F})} = \\alpha \\cdot \\phi_F \\beta \\cdot \\phi_F \\cdot R_{0F} = \\log(\\alpha \\cdot \\phi_F) R_{0F} = \\frac{\\log(\\alpha \\cdot \\phi_F)}{\\beta \\cdot \\phi_F} Finally estimates rescaled carrying capacity identical R_\\text{max} following transformations \\beta = \\beta \\cdot \\kappa / R_\\text{max} R_0 = R_0 / \\kappa \\cdot R_\\text{max} R_{0F} = R_{0F} / \\kappa \\cdot R_\\text{max} \\kappa, carrying capacity original scale, \\alpha/\\beta Beverton-Holt \\alpha/(\\beta \\cdot e) Ricker curve.","code":"population <- ypr_population_update(population, Rk = 3) ypr_plot_sr(population, plot_values = FALSE) population <- ypr_population_update(population, BH = 0L) ypr_plot_sr(population, plot_values = FALSE) ypr_plot_schedule(population, \"Age\", \"Survivorship\")"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"yield","dir":"Articles","previous_headings":"","what":"Yield","title":"Get Started with ypr","text":"yield simply number fish caught (irrespective weight whether harvested) given Y = \\sum_{= R_t}^{t_\\text{max}} R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a harvested fish considered becomes Y = \\sum_{= R_t}^{t_\\text{max}} R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a \\cdot R total weight (kg) important Y = \\sum_{= R_t}^{t_\\text{max}} R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a \\cdot R \\cdot W_a/1000 trophy fish considered Y = \\sum_{= R_t}^{t_\\text{max}} \\text{}(La < L_y)\\ 0\\ \\text{else}\\ R_{0F} \\cdot lx_a^F \\cdot \\pi \\cdot V_a \\cdot R \\cdot W_a/1000 L_y minimum length trophy fish.","code":"ypr_plot_yield(population, harvest = TRUE, biomass = TRUE, Ly = 60) ypr_tabulate_yield(population, harvest = TRUE, biomass = TRUE, Ly = 60) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.3 0.18 0.0505 7.39 66.8 3006. 3.39 #> 2 optimal 0.441 0.265 0.0553 7.35 66.7 2978. 5.53"},{"path":"https://poissonconsulting.github.io/ypr/articles/ypr.html","id":"efficiency","dir":"Articles","previous_headings":"","what":"Efficiency","title":"Get Started with ypr","text":"catchability q indicates probability capture unit effort (E). assumed related \\pi according relationship \\pi = 1 - \\exp(\\log(1-q)\\cdot E) can rearranged give E = \\frac{\\log(1-\\pi)}{\\log(1-q)}.","code":"ypr_plot_yield(population, y = \"Effort\", harvest = TRUE, biomass = TRUE, Ly = 60) ypr_plot_yield(population, y = \"YPUE\", harvest = TRUE, biomass = TRUE, Ly = 60) #> Warning: Removed 1 row containing missing values or values outside the scale range #> (`geom_line()`)."},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Joe Thorley. Author, maintainer. Ayla Pearson. Contributor. . Copyright holder, funder.","code":""},{"path":"https://poissonconsulting.github.io/ypr/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Thorley J (2024). ypr: Yield Per Recruit. R package version 0.6.0.9000, https://github.com/poissonconsulting/ypr, https://poissonconsulting.github.io/ypr/.","code":"@Manual{, title = {ypr: Yield Per Recruit}, author = {Joe Thorley}, year = {2024}, note = {R package version 0.6.0.9000, https://github.com/poissonconsulting/ypr}, url = {https://poissonconsulting.github.io/ypr/}, }"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"introduction","dir":"","previous_headings":"","what":"Introduction","title":"Yield Per Recruit","text":"ypr R package implements equilibrium-based yield per recruit methods. Yield per recruit methods can used estimate optimal yield (Walters Martell 2004) fish population one ecotypes. yield can based number fish caught (harvested) biomass fish just large (trophy) individuals. key life history parameters growth coefficient (k) mean maximum length (Linf) Von Bertalanffy growth curve length 50% mature (Ls) length 50% vulnerable harvest (Lv) annual interval natural mortality rate (n) lifetime number spawners per spawner low density (Rk) case ecotypes relative proportion recruits belong ecotype (RPR) calculations account stochasticity, predator-prey dynamics, angler responses density-dependent growth.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Yield Per Recruit","text":"install latest release CRAN install developmental version GitHub","code":"install.packages(\"ypr\") # install.packages(\"remotes\") remotes::install_github(\"poissonconsulting/ypr\")"},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"schedule","dir":"","previous_headings":"Demonstration","what":"Schedule","title":"Yield Per Recruit","text":"","code":"library(ypr) population <- ypr_population(Rk = 5, Ls = 50, Rmax = 100, rho = 0.6) ypr_plot_schedule(population, x = \"Length\", y = \"Spawning\") ypr_tabulate_schedule(population) #> # A tibble: 20 × 11 #> Age Length Weight Fecundity Spawning NaturalMortality Vulnerability #> #> 1 1 13.9 27.0 27.0 3.13e-56 0.2 3.13e-56 #> 2 2 25.9 174. 174. 2.91e-29 0.2 2.91e-29 #> 3 3 36.2 476. 476. 1.04e-14 0.2 1.04e-14 #> 4 4 45.1 918. 918. 3.46e- 5 0.2 3.46e- 5 #> 5 5 52.8 1469. 1469. 9.95e- 1 0.2 9.95e- 1 #> 6 6 59.3 2090. 2090. 1.00e+ 0 0.2 1.00e+ 0 #> 7 7 65.0 2747. 2747. 1.00e+ 0 0.2 1.00e+ 0 #> 8 8 69.9 3412. 3412. 1.00e+ 0 0.2 1.00e+ 0 #> 9 9 74.1 4065. 4065. 1 e+ 0 0.2 1 e+ 0 #> 10 10 77.7 4689. 4689. 1 e+ 0 0.2 1 e+ 0 #> 11 11 80.8 5274. 5274. 1 e+ 0 0.2 1 e+ 0 #> 12 12 83.5 5816. 5816. 1 e+ 0 0.2 1 e+ 0 #> 13 13 85.8 6310. 6310. 1 e+ 0 0.2 1 e+ 0 #> 14 14 87.8 6758. 6758. 1 e+ 0 0.2 1 e+ 0 #> 15 15 89.5 7160. 7160. 1 e+ 0 0.2 1 e+ 0 #> 16 16 90.9 7518. 7518. 1 e+ 0 0.2 1 e+ 0 #> 17 17 92.2 7836. 7836. 1 e+ 0 0.2 1 e+ 0 #> 18 18 93.3 8116. 8116. 1 e+ 0 0.2 1 e+ 0 #> 19 19 94.2 8363. 8363. 1 e+ 0 0.2 1 e+ 0 #> 20 20 95.0 8580. 8580. 1 e+ 0 0.2 1 e+ 0 #> # ℹ 4 more variables: Retention , FishingMortality , #> # Survivorship , FishedSurvivorship "},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"fish","dir":"","previous_headings":"Demonstration","what":"Fish","title":"Yield Per Recruit","text":"","code":"ypr_plot_fish(population, color = \"white\") ypr_tabulate_fish(population) #> # A tibble: 20 × 8 #> Age Survivors Spawners Caught Harvested Released HandlingMortalities #> #> 1 1 70.1 2.19e-54 4.39e-55 1.76e-55 2.63e-55 0 #> 2 2 56.1 1.63e-27 3.26e-28 1.30e-28 1.96e-28 0 #> 3 3 44.9 4.68e-13 9.36e-14 3.74e-14 5.62e-14 0 #> 4 4 35.9 1.24e- 3 2.48e- 4 9.93e- 5 1.49e- 4 0 #> 5 5 28.7 2.86e+ 1 5.72e+ 0 2.29e+ 0 3.43e+ 0 0 #> 6 6 21.1 2.11e+ 1 4.23e+ 0 1.69e+ 0 2.54e+ 0 0 #> 7 7 15.6 1.56e+ 1 3.11e+ 0 1.24e+ 0 1.87e+ 0 0 #> 8 8 11.5 1.15e+ 1 2.29e+ 0 9.16e- 1 1.37e+ 0 0 #> 9 9 8.43 8.43e+ 0 1.69e+ 0 6.74e- 1 1.01e+ 0 0 #> 10 10 6.20 6.20e+ 0 1.24e+ 0 4.96e- 1 7.44e- 1 0 #> 11 11 4.57 4.57e+ 0 9.13e- 1 3.65e- 1 5.48e- 1 0 #> 12 12 3.36 3.36e+ 0 6.72e- 1 2.69e- 1 4.03e- 1 0 #> 13 13 2.47 2.47e+ 0 4.95e- 1 1.98e- 1 2.97e- 1 0 #> 14 14 1.82 1.82e+ 0 3.64e- 1 1.46e- 1 2.18e- 1 0 #> 15 15 1.34 1.34e+ 0 2.68e- 1 1.07e- 1 1.61e- 1 0 #> 16 16 0.986 9.86e- 1 1.97e- 1 7.89e- 2 1.18e- 1 0 #> 17 17 0.726 7.26e- 1 1.45e- 1 5.81e- 2 8.71e- 2 0 #> 18 18 0.534 5.34e- 1 1.07e- 1 4.27e- 2 6.41e- 2 0 #> 19 19 0.393 3.93e- 1 7.86e- 2 3.15e- 2 4.72e- 2 0 #> 20 20 0.289 2.89e- 1 5.79e- 2 2.31e- 2 3.47e- 2 0 #> # ℹ 1 more variable: Ecotype "},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"stock-recruitment","dir":"","previous_headings":"Demonstration","what":"Stock-Recruitment","title":"Yield Per Recruit","text":"","code":"ypr_plot_sr(population) ypr_tabulate_sr(population) #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 286350. 80 159. 3600. #> 2 actual 0.2 0.08 167831. 70.1 108. 3112. #> 3 optimal 0.458 0.183 84129. 54.0 63.7 2641."},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"yield","dir":"","previous_headings":"Demonstration","what":"Yield","title":"Yield Per Recruit","text":"","code":"ypr_tabulate_yield(population) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.2 0.08 8.63 7.67 65.8 3112. 2.12 #> 2 optimal 0.458 0.183 11.7 6.87 62.6 2641. 5.82 ypr_plot_yield(population)"},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"information","dir":"","previous_headings":"","what":"Information","title":"Yield Per Recruit","text":"information see Get Started vignette.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"interaction","dir":"","previous_headings":"Information","what":"Interaction","title":"Yield Per Recruit","text":"interactively explore effects altering individual parameters schedule, stock-recruitment yield see ypr shiny app. screenshot yield ypr shiny app","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"creditation","dir":"","previous_headings":"","what":"Creditation","title":"Yield Per Recruit","text":"Development ypr partially supported Habitat Conservation Trust Foundation Ministry Forests, Lands Natural Resource Operations. hex designed Forest.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"contribution","dir":"","previous_headings":"","what":"Contribution","title":"Yield Per Recruit","text":"Please report issues. Pull requests always welcome.","code":""},{"path":"https://poissonconsulting.github.io/ypr/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"Yield Per Recruit","text":"Please note ypr project released Contributor Code Conduct. contributing project, agree abide terms","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":null,"dir":"Reference","previous_headings":"","what":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"population parameters Bull Trout Adams Lake Bison et al (2003)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"","code":"adams_bt_03"},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"Bison, R., O’Brien, D., Martell, S.J.D. 2003. Analysis Sustainable Fishing Options Adams Lake Bull Trout Using Life History Telemetry Data. BC Ministry Water Land Air Protection, Kamloops, B.C.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/adams_bt_03.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Adams Lake Bull Trout Population Parameters (2003) — adams_bt_03","text":"","code":"adams_bt_03 #> tmax: 20 #> k: 0.13 #> Linf: 131 #> t0: 0.2 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.4 #> Ls: 40 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3.8 #> n: 0.3 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 5 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.06 #> rho: 0 #> Hm: 0.15 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(adams_bt_03)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":null,"dir":"Reference","previous_headings":"","what":"Coerce to an Ecotypes Object — as_ypr_ecotypes","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"Coerce Ecotypes Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"","code":"as_ypr_ecotypes(x, ...) # S3 method for class 'data.frame' as_ypr_ecotypes(x, ...) # S3 method for class 'ypr_population' as_ypr_ecotypes(x, ...) # S3 method for class 'ypr_populations' as_ypr_ecotypes(x, ...) # S3 method for class 'ypr_ecotypes' as_ypr_ecotypes(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"x object coerce. ... Additional arguments.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"object class ypr_ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"as_ypr_ecotypes(data.frame): Coerce data.frame Ecotypes Object as_ypr_ecotypes(ypr_population): Coerce Population Object Ecotypes Object as_ypr_ecotypes(ypr_populations): Coerce Populations Object Ecotypes Object as_ypr_ecotypes(ypr_ecotypes): Coerce Ecotypes Object Ecotypes Object","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_ecotypes.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Coerce to an Ecotypes Object — as_ypr_ecotypes","text":"","code":"as_ypr_ecotypes(as.data.frame(ypr_ecotypes(Ls = c(10, 15, 20)))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 10, 15, 20 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Ls_10, Ls_15, Ls_20 as_ypr_ecotypes(ypr_population()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_ecotypes(ypr_populations(Ls = c(10, 15, 20))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 10, 15, 20 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Ls_10, Ls_15, Ls_20 as_ypr_ecotypes(ypr_ecotypes(Ls = c(10, 15, 20))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 10, 15, 20 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Ls_10, Ls_15, Ls_20"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Coerce to a Population Object — as_ypr_population","title":"Coerce to a Population Object — as_ypr_population","text":"Coerce Population Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Coerce to a Population Object — as_ypr_population","text":"","code":"as_ypr_population(x, ...) # S3 method for class 'data.frame' as_ypr_population(x, ...) # S3 method for class 'ypr_population' as_ypr_population(x, ...) # S3 method for class 'ypr_populations' as_ypr_population(x, ...) # S3 method for class 'ypr_ecotypes' as_ypr_population(x, ...) # S3 method for class 'data.frame' as_ypr_populations(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Coerce to a Population Object — as_ypr_population","text":"x object coerce. ... Unused.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Coerce to a Population Object — as_ypr_population","text":"object class ypr_population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Coerce to a Population Object — as_ypr_population","text":"as_ypr_population(data.frame): Coerce data.frame Population Object as_ypr_population(ypr_population): Coerce Population Object Population Object as_ypr_population(ypr_populations): Coerce Populations Object length 1 Population Object as_ypr_population(ypr_ecotypes): Coerce Ecotypes Object length 1 Population Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"functions","dir":"Reference","previous_headings":"","what":"Functions","title":"Coerce to a Population Object — as_ypr_population","text":"as_ypr_populations(data.frame): Coerce data.frame Populations Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Coerce to a Population Object — as_ypr_population","text":"","code":"as_ypr_population(as.data.frame(ypr_population())) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_population(ypr_populations()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_population(ypr_populations()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_population(ypr_ecotypes()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_populations(as.data.frame(ypr_populations(Rk = c(3, 4)))) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3, 4 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":null,"dir":"Reference","previous_headings":"","what":"Coerce to a Populations Object — as_ypr_populations","title":"Coerce to a Populations Object — as_ypr_populations","text":"Coerce Populations Object","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Coerce to a Populations Object — as_ypr_populations","text":"","code":"as_ypr_populations(x, ...) # S3 method for class 'ypr_population' as_ypr_populations(x, ...) # S3 method for class 'ypr_populations' as_ypr_populations(x, ...) # S3 method for class 'ypr_ecotypes' as_ypr_populations(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Coerce to a Populations Object — as_ypr_populations","text":"x object coerce. ... Unused.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Coerce to a Populations Object — as_ypr_populations","text":"object class ypr_ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Coerce to a Populations Object — as_ypr_populations","text":"as_ypr_populations(ypr_population): Coerce Population Object Population Object as_ypr_populations(ypr_populations): Coerce Populations Object length 1 Population Object as_ypr_populations(ypr_ecotypes): Coerce Ecotypes Object length 1 Population Object","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/as_ypr_populations.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Coerce to a Populations Object — as_ypr_populations","text":"","code":"as_ypr_populations(ypr_population()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_populations(ypr_populations()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 as_ypr_populations(ypr_ecotypes()) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":null,"dir":"Reference","previous_headings":"","what":"Check Ecotypes — check_ecotypes","title":"Check Ecotypes — check_ecotypes","text":"Checks ypr_ecotypes object valid parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check Ecotypes — check_ecotypes","text":"","code":"check_ecotypes(x, x_name = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check Ecotypes — check_ecotypes","text":"x object check. x_name string name object x NULL.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check Ecotypes — check_ecotypes","text":"informative error test fails invisible copy x.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/check_ecotypes.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check Ecotypes — check_ecotypes","text":"","code":"check_ecotypes(ypr_ecotypes())"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Check Population — check_population","title":"Check Population — check_population","text":"Checks ypr_population object valid parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check Population — check_population","text":"","code":"check_population(x, x_name = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check Population — check_population","text":"x object check. x_name string name object x NULL.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check Population — check_population","text":"informative error test fails invisible copy x.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/check_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check Population — check_population","text":"","code":"check_population(ypr_population())"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":null,"dir":"Reference","previous_headings":"","what":"Check Populations — check_populations","title":"Check Populations — check_populations","text":"Checks ypr_populations object valid parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check Populations — check_populations","text":"","code":"check_populations(x, x_name = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check Populations — check_populations","text":"x object check. x_name string name object x NULL.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check Populations — check_populations","text":"informative error test fails invisible copy x.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/check_populations.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check Populations — check_populations","text":"","code":"check_populations(ypr_populations())"},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":null,"dir":"Reference","previous_headings":"","what":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"populations parameters Bull Trout Chilliwack Lake Taylor (2005)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"","code":"chilliwack_bt_05"},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"object class ypr_populations().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"Taylor, J.L. 2005. Sustainability Chilliwack Lake Char Fishery. Ministry Water, Land Air Protection, Surrey, B.C.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/chilliwack_bt_05.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Chilliwack Lake Bull Trout Populations Parameters (2005) — chilliwack_bt_05","text":"","code":"chilliwack_bt_05 #> tmax: 20 #> k: 0.12 #> Linf: 86 #> t0: 0.018 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 2.8 #> Ls: 38.5 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5, 4.6, 2.5, 4.6, 2.5, 4.6, 2.5, 4.6, 2.5, 4.6, 2.5, 4.6 #> n: 0.17 #> nL: 0.2 #> Ln: 1000 #> Lv: 36.5 #> Vp: 11.7 #> Llo: 0, 0, 60, 60, 1000, 1000, 0, 0, 60, 60, 1000, 1000 #> Lup: 1000 #> Nc: 0.15 #> pi: 0.2 #> rho: 0 #> Hm: 0.05, 0.05, 0.05, 0.05, 0.05, 0.05, 0.2, 0.2, 0.2, 0.2, 0.2, 0.2 #> Rmax: 250 #> Wa: 0.022 #> fa: 2.29 #> q: 0.1 #> RPR: 1 yield <- ypr_tabulate_yield(chilliwack_bt_05, type = \"optimal\") yield$pi <- round(yield$pi, 2) yield <- yield[c(\"Llo\", \"Hm\", \"Rk\", \"pi\")] yield <- tidyr::spread(yield, Rk, pi) yield <- yield[order(-yield$Hm), ] yield #> # A tibble: 6 × 4 #> Llo Hm `2.5` `4.6` #> #> 1 0 0.2 0.08 0.14 #> 2 60 0.2 0.14 0.25 #> 3 1000 0.2 0.25 0.45 #> 4 0 0.05 0.08 0.14 #> 5 60 0.05 0.17 0.37 #> 6 1000 0.05 0.41 0.74 if (FALSE) { # \\dontrun{ ypr_plot_yield(chilliwack_bt_05, plot_values = FALSE) + ggplot2::facet_grid(Rk ~ Hm) + ggplot2::aes(group = Llo, linetype = Llo) } # }"},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"Tests Population, Populations Ecotypes","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"","code":"is.ypr_population(x) is_ypr_population(x) is.ypr_populations(x) is_ypr_populations(x) is.ypr_ecotypes(x) is_ypr_ecotypes(x)"},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"x object test.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"functions","dir":"Reference","previous_headings":"","what":"Functions","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"is_ypr_population(): Test Population .ypr_populations(): Test Populations is_ypr_populations(): Test Populations .ypr_ecotypes(): Test Ecotypes is_ypr_ecotypes(): Test Ecotypes","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/is.ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tests if is a Population, Populations or Ecotypes — is.ypr_population","text":"","code":"is.ypr_population(ypr_population()) #> [1] TRUE is_ypr_population(ypr_population()) #> [1] TRUE is.ypr_populations(ypr_populations()) #> [1] TRUE is_ypr_population(ypr_populations()) #> [1] FALSE is.ypr_ecotypes(ypr_ecotypes()) #> [1] TRUE is_ypr_ecotypes(ypr_ecotypes()) #> [1] TRUE"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":null,"dir":"Reference","previous_headings":"","what":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"population parameters Bull Trout Kootenay Lake Andrusak Thorley (2013)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"","code":"kootenay_bt_13"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"estimates used management.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"Andrusak, G.F., Thorley, J.L. 2013. Kootenay Lake Exploitation Study: Fishing Natural Mortality Large Rainbow Trout Bull Trout: 2013 Annual Report. Poisson Consulting Ltd. Redfish Consulting Ltd. Report, Habitat Conservation Trust Foundation, Victoria, BC.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_bt_13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Kootenay Lake Bull Trout Population Parameters (2013) — kootenay_bt_13","text":"","code":"kootenay_bt_13 #> tmax: 20 #> k: 0.19 #> Linf: 100 #> t0: 0.5 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.04 #> Ls: 60 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 5 #> n: 0.29 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 5 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.1 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(kootenay_bt_13)"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":null,"dir":"Reference","previous_headings":"","what":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"population parameters Rainbow Trout Kootenay Lake.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"","code":"kootenay_rb"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"estimates liable change used management.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"Thorley, J.L., Andrusak, G.F. 2017. fishing natural mortality large, piscivorous Bull Trout Rainbow Trout Kootenay Lake, British Columbia (2008–2013). PeerJ 5: e2874. doi:10.7717/peerj.2874.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Kootenay Lake Rainbow Trout Population Parameters — kootenay_rb","text":"","code":"kootenay_rb #> tmax: 20 #> k: 0.26 #> Linf: 100 #> t0: 0.5 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.2 #> Ls: 75 #> Sp: 20 #> es: 0.9 #> Sm: 0.53 #> fb: 0.86 #> tR: 1 #> BH: 1 #> Rk: 17.65 #> n: 0.23 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 10 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.14 #> rho: 0.62 #> Hm: 0.25 #> Rmax: 115000 #> Wa: 0.005 #> fa: 3.9 #> q: 0.028 #> RPR: 1 ypr_plot_yield(kootenay_rb)"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":null,"dir":"Reference","previous_headings":"","what":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"population parameters Rainbow Trout Kootenay Lake Andrusak Thorley (2013)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"","code":"kootenay_rb_13"},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"estimates used management.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"Andrusak, G.F., Thorley, J.L. 2013. Kootenay Lake Exploitation Study: Fishing Natural Mortality Large Rainbow Trout Bull Trout: 2013 Annual Report. Poisson Consulting Ltd. Redfish Consulting Ltd. Report, Habitat Conservation Trust Foundation, Victoria, BC.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/kootenay_rb_13.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Kootenay Lake Rainbow Trout Population Parameters (2013) — kootenay_rb_13","text":"","code":"kootenay_rb_13 #> tmax: 20 #> k: 0.25 #> Linf: 100 #> t0: 0.75 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.39 #> Ls: 60 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 10 #> n: 0.38 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 5 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.1 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(kootenay_rb_13)"},{"path":"https://poissonconsulting.github.io/ypr/reference/params.html","id":null,"dir":"Reference","previous_headings":"","what":"Parameter Descriptions for ypr Functions — params","title":"Parameter Descriptions for ypr Functions — params","text":"Parameter Descriptions ypr Functions","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/params.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Parameter Descriptions for ypr Functions — params","text":"tmax maximum age (yr). k VB growth coefficient (yr-1). Linf VB mean maximum length (cm). t0 (theoretical) age zero length (yr). k2 VB growth coefficient length L2 (yr-1). Linf2 VB mean maximum length length L2 (cm). L2 length (age negative) growth switches first second phase (cm yr). Wb weight (function length) scaling exponent. Ls length (age negative) 50 % mature (cm yr). Sp maturity (function length) power. es annual probability mature fish spawning. Sm spawning mortality probability. fb fecundity (function weight) scaling exponent. tR age survival density-independent (yr). BH Recruitment follows Beverton-Holt (1) Ricker (0) relationship. Rk lifetime spawners per spawner low density (egg tR survival 0 1). n annual interval natural mortality rate age tR. nL annual interval natural mortality rate length Ln. Ln length (age negative) annual interval natural mortality rate switches n nL (cm yr). Lv length (age negative) 50 % vulnerable harvest (cm yr). Vp vulnerability harvest (function length) power. Llo lower harvest slot length (cm). Lup upper harvest slot length (cm). Nc slot limits non-compliance probability. pi vector probabilities capture calculate yield . rho release probability. Hm hooking mortality probability. Rmax number recruits carrying capacity (ind). Wa (extrapolated) weight 1 cm individual (g). fa (theoretical) fecundity 1 g female (eggs). q catchability (annual probability capture) unit effort. RPR relative proportion recruits ecotype. flag specifying whether include parameter values. u flag specifying whether plot exploitation rate opposed capture rate. percent flag specifying whether plot number fish percent frequency (default). color string color around bar (NULL). population object class ypr_population(). populations object class ypr_populations(). ecotypes object class ypr_ecotypes(). plot_values flag specifying whether plot actual optimal values. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. title string report title. date date report date. file string path file (without extension). binwidth positive integer width bins grouping. type string indicating whether include '' just 'actual' 'optimal' yield. object population populations. ... Unused parameters. expand flag specifying whether expand parameter combinations. view flag specifying whether view report (rendering html). ask flag specifying whether ask overwriting creating file. description string describing population. age numeric vector age (yr). length numeric vector length (cm). names character vector unique ecotype names. x object coerce.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Population Schedule — plot.ypr_population","title":"Plot Population Schedule — plot.ypr_population","text":"Plot Population Schedule","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Population Schedule — plot.ypr_population","text":"","code":"# S3 method for class 'ypr_population' plot(x, type = \"b\", ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Population Schedule — plot.ypr_population","text":"x population plot. type string specifying plot type. Possible values include 'b', 'p' 'l'. ... Additional arguments passed graphics::plot function.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Population Schedule — plot.ypr_population","text":"invisible copy original object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/plot.ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Population Schedule — plot.ypr_population","text":"","code":"if (FALSE) { # \\dontrun{ plot(ypr_population()) } # }"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":null,"dir":"Reference","previous_headings":"","what":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"population parameters Bull Trout Quesnel Lake, BC.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"","code":"quesnel_bt"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"estimates liable change used management.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_bt.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Quesnel Lake Bull Trout Population Parameters — quesnel_bt","text":"","code":"quesnel_bt #> tmax: 20 #> k: 0.13 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.4 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3.8 #> n: 0.3 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.06 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(quesnel_bt)"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":null,"dir":"Reference","previous_headings":"","what":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"population parameters Lake Trout Quesnel Lake, BC.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"","code":"quesnel_lt"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"estimates liable change used management.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_lt.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Quesnel Lake Lake Trout Population Parameters — quesnel_lt","text":"","code":"quesnel_lt #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3.1 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5 #> n: 0.15 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.04 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(quesnel_lt)"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":null,"dir":"Reference","previous_headings":"","what":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"population parameters Rainbow Trout Quesnel Lake, BC.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"","code":"quesnel_rb"},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"estimates liable change used management.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/quesnel_rb.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Quesnel Lake Rainbow Trout Population Parameters — quesnel_rb","text":"","code":"quesnel_rb #> tmax: 20 #> k: 0.2 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 6 #> n: 0.5 #> nL: 0.2 #> Ln: 1000 #> Lv: 40 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.14 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_plot_yield(quesnel_rb)"},{"path":"https://poissonconsulting.github.io/ypr/reference/reexports.html","id":null,"dir":"Reference","previous_headings":"","what":"Objects exported from other packages — reexports","title":"Objects exported from other packages — reexports","text":"objects imported packages. Follow links see documentation. tibble as_tibble","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr-package.html","id":null,"dir":"Reference","previous_headings":"","what":"ypr: Yield Per Recruit — ypr-package","title":"ypr: Yield Per Recruit — ypr-package","text":"implementation equilibrium-based yield per recruit methods. Yield per recruit methods can used estimate optimal yield fish population described Walters Martell (2004) . yield can based number fish caught (harvested) biomass caught fish just large (trophy) individuals.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"ypr: Yield Per Recruit — ypr-package","text":"Maintainer: Joe Thorley joe@poissonconsulting.ca (ORCID) contributors: Ayla Pearson (ORCID) [contributor] Poisson Consulting [copyright holder, funder]","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":null,"dir":"Reference","previous_headings":"","what":"Age At Length — ypr_age_at_length","title":"Age At Length — ypr_age_at_length","text":"Age Length","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Age At Length — ypr_age_at_length","text":"","code":"ypr_age_at_length(population, length)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Age At Length — ypr_age_at_length","text":"population object class ypr_population(). length numeric vector length (cm).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Age At Length — ypr_age_at_length","text":"double vector lengths.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_age_at_length.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Age At Length — ypr_age_at_length","text":"","code":"ypr_age_at_length(ypr_population(), seq(0, 100, by = 10)) #> [1] 0.0000000 0.7024034 1.4876237 2.3778330 3.4055042 4.6209812 #> [7] 6.1086049 8.0264854 10.7295861 15.3505673 Inf"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":null,"dir":"Reference","previous_headings":"","what":"Detabulate Population Parameters — ypr_detabulate_parameters","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"Detabulate Population Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"","code":"ypr_detabulate_parameters(x)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"x data frame columns Parameter Value specifying one parameters values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"object class ypr_population()","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_detabulate_parameters.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Detabulate Population Parameters — ypr_detabulate_parameters","text":"","code":"ypr_detabulate_parameters(ypr_tabulate_parameters(ypr_population())) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":null,"dir":"Reference","previous_headings":"","what":"Create Ecotypes Object — ypr_ecotypes","title":"Create Ecotypes Object — ypr_ecotypes","text":"Creates ypr_ecotypes object.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create Ecotypes Object — ypr_ecotypes","text":"","code":"ypr_ecotypes(..., names = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create Ecotypes Object — ypr_ecotypes","text":"... Unused parameters. names character vector unique ecotype names.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create Ecotypes Object — ypr_ecotypes","text":"ypr_ecotypes() objects","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_ecotypes.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create Ecotypes Object — ypr_ecotypes","text":"","code":"ypr_ecotypes(Linf = c(1, 2)) #> tmax: 20 #> k: 0.15 #> Linf: 1, 2 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Linf_1, Linf_2 ypr_ecotypes(Linf = c(1, 2), t0 = c(0, 0.5)) #> tmax: 20 #> k: 0.15 #> Linf: 1, 2 #> t0: 0, 0.5 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Linf_1_t0_0, Linf_2_t0_0_5"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":null,"dir":"Reference","previous_headings":"","what":"Exploitation Probability — ypr_exploitation","title":"Exploitation Probability — ypr_exploitation","text":"Converts capture probabilities exploitation probabilities based release handling mortality probabilities probability exploitation includes handling mortalities. calculation assumes released fish recaught year.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Exploitation Probability — ypr_exploitation","text":"","code":"ypr_exploitation(object, pi = ypr_get_par(object))"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Exploitation Probability — ypr_exploitation","text":"object population populations. pi vector capture probabilities calculate exploitation probabilities .","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Exploitation Probability — ypr_exploitation","text":"vector exploitation probabilities.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Exploitation Probability — ypr_exploitation","text":"case release (100% handling mortalities) exploitation probability identical capture probability. Otherwise less.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_exploitation.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Exploitation Probability — ypr_exploitation","text":"","code":"ypr_exploitation(ypr_population(pi = 0.4)) #> [1] 0.4 ypr_exploitation(ypr_population(pi = 0.4, rho = 0.6, Hm = 0.2)) #> [1] 0.208"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":null,"dir":"Reference","previous_headings":"","what":"Get Parameter Value — ypr_get_par","title":"Get Parameter Value — ypr_get_par","text":"Get Parameter Value","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get Parameter Value — ypr_get_par","text":"","code":"ypr_get_par(object, par = \"pi\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get Parameter Value — ypr_get_par","text":"object ypr object. par string parameter.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get Parameter Value — ypr_get_par","text":"numeric integer scalar vector parameter value.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_get_par.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get Parameter Value — ypr_get_par","text":"","code":"ypr_get_par(ypr_population()) #> [1] 0.2"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":null,"dir":"Reference","previous_headings":"","what":"Length At Age — ypr_length_at_age","title":"Length At Age — ypr_length_at_age","text":"Length Age","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Length At Age — ypr_length_at_age","text":"","code":"ypr_length_at_age(population, age)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Length At Age — ypr_length_at_age","text":"population object class ypr_population(). age numeric vector age (yr).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Length At Age — ypr_length_at_age","text":"double vector lengths.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_length_at_age.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Length At Age — ypr_length_at_age","text":"","code":"ypr_length_at_age(ypr_population(), seq(0, 5, by = 0.5)) #> [1] 0.000000 7.225651 13.929202 20.148378 25.918178 31.271072 36.237185 #> [8] 40.844464 45.118836 49.084358 52.763345"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Population(s) or Ecotype Names — ypr_names","title":"Population(s) or Ecotype Names — ypr_names","text":"Generates set unique names based differences parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Population(s) or Ecotype Names — ypr_names","text":"","code":"ypr_names(x, ...) # S3 method for class 'ypr_population' ypr_names(x, ...) # S3 method for class 'ypr_populations' ypr_names(x, ...) # S3 method for class 'ypr_ecotypes' ypr_names(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Population(s) or Ecotype Names — ypr_names","text":"x object class ypr_population, ypr_populations ypr_ecotypes. ... Unused.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Population(s) or Ecotype Names — ypr_names","text":"character vector unique parameter based names.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Population(s) or Ecotype Names — ypr_names","text":"Parameter RPR ignored irrelevant population(s) distinguish ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Population(s) or Ecotype Names — ypr_names","text":"ypr_names(ypr_population): Population Names ypr_names(ypr_populations): Populations Names ypr_names(ypr_ecotypes): Ecotypes Names","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_names.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Population(s) or Ecotype Names — ypr_names","text":"","code":"ypr_names(ypr_population()) #> [1] \"Pop_1\" ypr_names(ypr_populations()) #> [1] \"Pop_1\" ypr_names(ypr_populations()) #> [1] \"Pop_1\""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":null,"dir":"Reference","previous_headings":"","what":"Optimize Capture — ypr_optimize","title":"Optimize Capture — ypr_optimize","text":"Finds annual interval capture probability (pi) maximises yield given population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Optimize Capture — ypr_optimize","text":"","code":"ypr_optimize(object, Ly = 0, harvest = TRUE, biomass = FALSE)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Optimize Capture — ypr_optimize","text":"object population populations. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Optimize Capture — ypr_optimize","text":"annual interval capture probability (pi) maximises yield.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_optimize.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Optimize Capture — ypr_optimize","text":"","code":"ypr_optimize(ypr_population()) #> [1] 0.115183"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Biomass — ypr_plot_biomass","title":"Plot Biomass — ypr_plot_biomass","text":"Produces frequency histogram total fish 'Biomass' 'Eggs' deposition 'Age' class.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Biomass — ypr_plot_biomass","text":"","code":"ypr_plot_biomass(population, y = \"Biomass\", color = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Biomass — ypr_plot_biomass","text":"population object class ypr_population(). y string term y-axis. color string color around bar (NULL).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Biomass — ypr_plot_biomass","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_biomass.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Biomass — ypr_plot_biomass","text":"","code":"ypr_plot_biomass(ypr_population(), color = \"white\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Fish — ypr_plot_fish","title":"Plot Fish — ypr_plot_fish","text":"Produces frequency histogram number fish 'Survivors', 'Spawners', 'Caught', 'Harvested' 'Released' categories 'Length', 'Age' 'Weight' class.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Fish — ypr_plot_fish","text":"","code":"ypr_plot_fish( population, x = \"Age\", y = \"Survivors\", percent = FALSE, binwidth = 1L, color = NULL )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Fish — ypr_plot_fish","text":"population object class ypr_population(). x object coerce. y string term y-axis. percent flag specifying whether plot number fish percent frequency (default). binwidth positive integer width bins grouping. color string color around bar (NULL).","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Fish — ypr_plot_fish","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_fish.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Fish — ypr_plot_fish","text":"","code":"ypr_plot_fish(ypr_population(), color = \"white\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"Produces bivariate line plot two schedule terms.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"","code":"ypr_plot_schedule(population, x = \"Age\", y = \"Length\")"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"population object class ypr_population(). x string term x-axis. y string term y-axis.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_schedule.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Population or Ecotypes Schedule Terms — ypr_plot_schedule","text":"","code":"ypr_plot_schedule(ypr_population())"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Stock-Recruitment Curve — ypr_plot_sr","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"Plot Stock-Recruitment Curve","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"","code":"ypr_plot_sr( population, Ly = 0, harvest = TRUE, biomass = FALSE, plot_values = TRUE )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"population object class ypr_population(). Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. plot_values flag specifying whether plot actual optimal values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"ggplot2 object.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_sr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Stock-Recruitment Curve — ypr_plot_sr","text":"","code":"ypr_plot_sr(ypr_population(Rk = 10)) ypr_plot_sr(ypr_population(Rk = 10, BH = 0L))"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot Yield by Capture — ypr_plot_yield","title":"Plot Yield by Capture — ypr_plot_yield","text":"Plots 'Yield', 'Age', 'Length', 'Weight', 'Effort', 'YPUE' annual interval capture/exploitation probability.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot Yield by Capture — ypr_plot_yield","text":"","code":"ypr_plot_yield(object, ...) # Default S3 method ypr_plot_yield( object, y = \"Yield\", pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, u = harvest, plot_values = TRUE, ... ) # S3 method for class 'ypr_populations' ypr_plot_yield( object, y = \"Yield\", pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, u = harvest, plot_values = TRUE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot Yield by Capture — ypr_plot_yield","text":"object population populations. ... Unused parameters. y string term y-axis. pi vector probabilities capture calculate yield . Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. u flag specifying whether plot exploitation rate opposed capture rate. plot_values flag specifying whether plot actual optimal values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot Yield by Capture — ypr_plot_yield","text":"ggplot2 object.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Plot Yield by Capture — ypr_plot_yield","text":"ypr_plot_yield(default): Plot Yield Capture ypr_plot_yield(ypr_populations): Plot Yield Capture","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_plot_yield.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot Yield by Capture — ypr_plot_yield","text":"","code":"if (FALSE) { # \\dontrun{ ypr_plot_yield( ypr_populations( Rk = c(2.5, 4.6), Llo = c(0, 60) ), plot_values = FALSE ) + ggplot2::facet_wrap(~Llo) + ggplot2::aes(group = Rk, color = Rk) + ggplot2::scale_color_manual(values = c(\"black\", \"blue\")) ypr_plot_yield(ypr_populations(Rk = c(2.5, 4.6), Llo = c(0, 60))) + ggplot2::facet_grid(Rk ~ Llo) } # } ypr_plot_yield(ypr_population())"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":null,"dir":"Reference","previous_headings":"","what":"Population Parameters — ypr_population","title":"Population Parameters — ypr_population","text":"Generates object class ypr_population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Population Parameters — ypr_population","text":"","code":"ypr_population( tmax = 20L, k = 0.15, Linf = 100, t0 = 0, k2 = 0.15, Linf2 = 100, L2 = 1000, Wb = 3, Ls = 50, Sp = 100, es = 1, Sm = 0, fb = 1, tR = 1L, BH = 1L, Rk = 3, n = 0.2, nL = 0.2, Ln = 1000, Lv = 50, Vp = 100, Llo = 0, Lup = 1000, Nc = 0, pi = 0.2, rho = 0, Hm = 0, Rmax = 1, Wa = 0.01, fa = 1, q = 0.1, RPR = 1 )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Population Parameters — ypr_population","text":"tmax maximum age (yr). k VB growth coefficient (yr-1). Linf VB mean maximum length (cm). t0 (theoretical) age zero length (yr). k2 VB growth coefficient length L2 (yr-1). Linf2 VB mean maximum length length L2 (cm). L2 length (age negative) growth switches first second phase (cm yr). Wb weight (function length) scaling exponent. Ls length (age negative) 50 % mature (cm yr). Sp maturity (function length) power. es annual probability mature fish spawning. Sm spawning mortality probability. fb fecundity (function weight) scaling exponent. tR age survival density-independent (yr). BH Recruitment follows Beverton-Holt (1) Ricker (0) relationship. Rk lifetime spawners per spawner low density (egg tR survival 0 1). n annual interval natural mortality rate age tR. nL annual interval natural mortality rate length Ln. Ln length (age negative) annual interval natural mortality rate switches n nL (cm yr). Lv length (age negative) 50 % vulnerable harvest (cm yr). Vp vulnerability harvest (function length) power. Llo lower harvest slot length (cm). Lup upper harvest slot length (cm). Nc slot limits non-compliance probability. pi annual capture probability. rho release probability. Hm hooking mortality probability. Rmax number recruits carrying capacity (ind). Wa (extrapolated) weight 1 cm individual (g). fa (theoretical) fecundity 1 g female (eggs). q catchability (annual probability capture) unit effort. RPR relative proportion recruits ecotype.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Population Parameters — ypr_population","text":"object class ypr_population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Population Parameters — ypr_population","text":"","code":"ypr_population(k = 0.1, Linf = 90) #> tmax: 20 #> k: 0.1 #> Linf: 90 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Population Names — ypr_population_names","title":"Population Names — ypr_population_names","text":"Generates set unique names based differences parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Population Names — ypr_population_names","text":"","code":"ypr_population_names(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Population Names — ypr_population_names","text":"population object class ypr_population, ypr_populations ypr_ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_names.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Population Names — ypr_population_names","text":"character vector unique parameter based names.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_update.html","id":null,"dir":"Reference","previous_headings":"","what":"Update a Population Object — ypr_population_update","title":"Update a Population Object — ypr_population_update","text":"ypr_update().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_update.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Update a Population Object — ypr_population_update","text":"","code":"ypr_population_update(population, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_population_update.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Update a Population Object — ypr_population_update","text":"population ypr_population object. ... One parameter values ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":null,"dir":"Reference","previous_headings":"","what":"Populations — ypr_populations","title":"Populations — ypr_populations","text":"Populations","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Populations — ypr_populations","text":"","code":"ypr_populations(..., expand = TRUE, names = NULL)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Populations — ypr_populations","text":"... Unused parameters. expand flag specifying whether expand parameter combinations. names character vector unique ecotype names.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Populations — ypr_populations","text":"list ypr_population() objects","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Populations — ypr_populations","text":"","code":"ypr_populations(Rk = c(2.5, 4.6), Hm = c(0.2, 0.05)) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5, 4.6, 2.5, 4.6 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0.05, 0.05, 0.2, 0.2 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":null,"dir":"Reference","previous_headings":"","what":"Expand Populations — ypr_populations_expand","title":"Expand Populations — ypr_populations_expand","text":"object class ypr_population() unique combinations parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Expand Populations — ypr_populations_expand","text":"","code":"ypr_populations_expand(populations)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Expand Populations — ypr_populations_expand","text":"populations object class ypr_populations().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Expand Populations — ypr_populations_expand","text":"object class ypr_population.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_populations_expand.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Expand Populations — ypr_populations_expand","text":"","code":"ypr_populations_expand( ypr_populations( Rk = c(2.5, 4, 2.5), Hm = c(0.1, 0.2, 0.1) ) ) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5, 4, 2.5, 4 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0.1, 0.1, 0.2, 0.2 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":null,"dir":"Reference","previous_headings":"","what":"Report — ypr_report","title":"Report — ypr_report","text":"Creates Rmd file can used generate report.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Report — ypr_report","text":"","code":"ypr_report( population, Ly = 0, harvest = TRUE, biomass = FALSE, title = \"Population Report\", description = \"\", date = Sys.Date(), file = \"report\", view = FALSE, ask = TRUE )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Report — ypr_report","text":"population object class ypr_population(). Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. title string report title. description string describing population. date date report date. file string path file (without extension). view flag specifying whether view report (rendering html). ask flag specifying whether ask overwriting creating file.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Report — ypr_report","text":"invisible character vector contents file.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_report.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Report — ypr_report","text":"","code":"if (FALSE) { # \\dontrun{ ypr_report(ypr_population(), file = tempfile(), ask = FALSE) } # }"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_schedule.html","id":null,"dir":"Reference","previous_headings":"","what":"Life-History Schedule — ypr_schedule","title":"Life-History Schedule — ypr_schedule","text":"DEPRECATED: Replace ypr_schedule() ypr_tabulate_schedule()","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_schedule.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Life-History Schedule — ypr_schedule","text":"","code":"ypr_schedule(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_schedule.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Life-History Schedule — ypr_schedule","text":"Generates life-history schedule age population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":null,"dir":"Reference","previous_headings":"","what":"Stock-Recruitment Parameters — ypr_sr","title":"Stock-Recruitment Parameters — ypr_sr","text":"Returns single rowed data frame SR parameters: alpha Survival egg age tR low density beta Density-dependence Rk Lifetime spawners per spawner low density phi Lifetime eggs deposited per recruit unfished equilibrium phiF Lifetime eggs deposited per recruit fished equilibrium R0 Age tR recruits unfished equilibrium R0F Age tR recruits fished equilibrium S0 Spawners unfished equilibrium S0F Spawners fished equilibrium","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Stock-Recruitment Parameters — ypr_sr","text":"","code":"ypr_sr(object)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Stock-Recruitment Parameters — ypr_sr","text":"object population populations.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Stock-Recruitment Parameters — ypr_sr","text":"data frame SR parameters.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_sr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Stock-Recruitment Parameters — ypr_sr","text":"","code":"ypr_sr(ypr_population()) # Beverton-Holt #> # A tibble: 1 × 9 #> alpha beta Rk phi phiF R0 R0F S0 S0F #> #> 1 0.000838 0.000838 3 3579. 1465. 0.667 0.186 1.33 0.211 ypr_sr(ypr_population(BH = 0L)) # Ricker #> # A tibble: 1 × 9 #> alpha beta Rk phi phiF R0 R0F S0 S0F #> #> 1 0.000838 0.000308 3 3579. 1465. 0.995 0.455 1.98 0.517"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"Produces data frame 'Weight' 'Fecundity' number 'Survivors' 'Spawners' total 'Biomass' 'Eggs' 'Age' class.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"","code":"ypr_tabulate_biomass(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"population object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"data frame","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_biomass.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Biomass (and Eggs) — ypr_tabulate_biomass","text":"","code":"ypr_tabulate_biomass(ypr_population()) #> # A tibble: 20 × 8 #> Age Length Weight Fecundity Survivors Spawners Biomass Eggs #> #> 1 1 13.9 27.0 27.0 0.186 5.82e-57 5.02 7.86e-56 #> 2 2 25.9 174. 174. 0.149 4.32e-30 25.9 3.76e-28 #> 3 3 36.2 476. 476. 0.119 1.24e-15 56.6 2.95e-13 #> 4 4 45.1 918. 918. 0.0951 3.29e- 6 87.4 1.51e- 3 #> 5 5 52.8 1469. 1469. 0.0761 7.58e- 2 112. 5.56e+ 1 #> 6 6 59.3 2090. 2090. 0.0488 4.88e- 2 102. 5.10e+ 1 #> 7 7 65.0 2747. 2747. 0.0312 3.12e- 2 85.7 4.29e+ 1 #> 8 8 69.9 3412. 3412. 0.0200 2.00e- 2 68.2 3.41e+ 1 #> 9 9 74.1 4065. 4065. 0.0128 1.28e- 2 52.0 2.60e+ 1 #> 10 10 77.7 4689. 4689. 0.00818 8.18e- 3 38.4 1.92e+ 1 #> 11 11 80.8 5274. 5274. 0.00524 5.24e- 3 27.6 1.38e+ 1 #> 12 12 83.5 5816. 5816. 0.00335 3.35e- 3 19.5 9.74e+ 0 #> 13 13 85.8 6310. 6310. 0.00214 2.14e- 3 13.5 6.77e+ 0 #> 14 14 87.8 6758. 6758. 0.00137 1.37e- 3 9.28 4.64e+ 0 #> 15 15 89.5 7160. 7160. 0.000878 8.78e- 4 6.29 3.14e+ 0 #> 16 16 90.9 7518. 7518. 0.000562 5.62e- 4 4.23 2.11e+ 0 #> 17 17 92.2 7836. 7836. 0.000360 3.60e- 4 2.82 1.41e+ 0 #> 18 18 93.3 8116. 8116. 0.000230 2.30e- 4 1.87 9.34e- 1 #> 19 19 94.2 8363. 8363. 0.000147 1.47e- 4 1.23 6.16e- 1 #> 20 20 95.0 8580. 8580. 0.0000943 9.43e- 5 0.809 4.05e- 1"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Fish Numbers — ypr_tabulate_fish","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"Produces data frame number fish 'Survivors', 'Spawners', 'Caught', 'Harvested', 'Released' 'HandlingMortalities' categories 'Length', 'Age' 'Weight' class 'Ecotype' (NA applicable)","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"","code":"ypr_tabulate_fish(population, x = \"Age\", binwidth = 1L)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"population object class ypr_population(). x object coerce. binwidth positive integer width bins grouping.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"data frame","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_fish.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Fish Numbers — ypr_tabulate_fish","text":"","code":"ypr_tabulate_fish(ypr_population()) #> # A tibble: 20 × 8 #> Age Survivors Spawners Caught Harvested Released HandlingMortalities #> #> 1 1 0.186 5.82e-57 1.16e-57 1.16e-57 0 0 #> 2 2 0.149 4.32e-30 8.64e-31 8.64e-31 0 0 #> 3 3 0.119 1.24e-15 2.48e-16 2.48e-16 0 0 #> 4 4 0.0951 3.29e- 6 6.58e- 7 6.58e- 7 0 0 #> 5 5 0.0761 7.58e- 2 1.52e- 2 1.52e- 2 0 0 #> 6 6 0.0488 4.88e- 2 9.75e- 3 9.75e- 3 0 0 #> 7 7 0.0312 3.12e- 2 6.24e- 3 6.24e- 3 0 0 #> 8 8 0.0200 2.00e- 2 3.99e- 3 3.99e- 3 0 0 #> 9 9 0.0128 1.28e- 2 2.56e- 3 2.56e- 3 0 0 #> 10 10 0.00818 8.18e- 3 1.64e- 3 1.64e- 3 0 0 #> 11 11 0.00524 5.24e- 3 1.05e- 3 1.05e- 3 0 0 #> 12 12 0.00335 3.35e- 3 6.70e- 4 6.70e- 4 0 0 #> 13 13 0.00214 2.14e- 3 4.29e- 4 4.29e- 4 0 0 #> 14 14 0.00137 1.37e- 3 2.74e- 4 2.74e- 4 0 0 #> 15 15 0.000878 8.78e- 4 1.76e- 4 1.76e- 4 0 0 #> 16 16 0.000562 5.62e- 4 1.12e- 4 1.12e- 4 0 0 #> 17 17 0.000360 3.60e- 4 7.20e- 5 7.20e- 5 0 0 #> 18 18 0.000230 2.30e- 4 4.61e- 5 4.61e- 5 0 0 #> 19 19 0.000147 1.47e- 4 2.95e- 5 2.95e- 5 0 0 #> 20 20 0.0000943 9.43e- 5 1.89e- 5 1.89e- 5 0 0 #> # ℹ 1 more variable: Ecotype "},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Population Parameters — ypr_tabulate_parameters","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"Tabulate Population Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"","code":"ypr_tabulate_parameters(population)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"population object class ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"table population parameters","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_parameters.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Population Parameters — ypr_tabulate_parameters","text":"","code":"ypr_tabulate_parameters(ypr_population()) #> # A tibble: 32 × 3 #> Parameter Value Description #> #> 1 tmax 20 \"The maximum age (yr).\" #> 2 k 0.15 \"The VB growth coefficient (yr-1).\" #> 3 Linf 100 \"The VB mean maximum length (cm).\" #> 4 t0 0 \"The (theoretical) age at zero length (yr).\" #> 5 k2 0.15 \"The VB growth coefficient after length L2 (yr-1).\" #> 6 Linf2 100 \"The VB mean maximum length after length L2 (cm).\" #> 7 L2 1000 \"The length (or age if negative) at which growth switches … #> 8 Wb 3 \"The weight (as a function of length) scaling exponent.\" #> 9 Ls 50 \"The length (or age if negative) at which 50 % mature (cm … #> 10 Sp 100 \"The maturity (as a function of length) power.\" #> # ℹ 22 more rows"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":null,"dir":"Reference","previous_headings":"","what":"Life-History Schedule — ypr_tabulate_schedule","title":"Life-History Schedule — ypr_tabulate_schedule","text":"Generates life-history schedule age population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Life-History Schedule — ypr_tabulate_schedule","text":"","code":"ypr_tabulate_schedule(object, ...) # S3 method for class 'ypr_population' ypr_tabulate_schedule(object, ...) # S3 method for class 'ypr_ecotypes' ypr_tabulate_schedule(object, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Life-History Schedule — ypr_tabulate_schedule","text":"object population populations. ... Unused parameters.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Life-History Schedule — ypr_tabulate_schedule","text":"tibble life-history schedule age.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Life-History Schedule — ypr_tabulate_schedule","text":"ypr_tabulate_schedule(ypr_population): Tabulate Schedule ypr_tabulate_schedule(ypr_ecotypes): Tabulate Schedule","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_schedule.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Life-History Schedule — ypr_tabulate_schedule","text":"","code":"ypr_tabulate_schedule(ypr_population()) #> # A tibble: 20 × 11 #> Age Length Weight Fecundity Spawning NaturalMortality Vulnerability #> #> 1 1 13.9 27.0 27.0 3.13e-56 0.2 3.13e-56 #> 2 2 25.9 174. 174. 2.91e-29 0.2 2.91e-29 #> 3 3 36.2 476. 476. 1.04e-14 0.2 1.04e-14 #> 4 4 45.1 918. 918. 3.46e- 5 0.2 3.46e- 5 #> 5 5 52.8 1469. 1469. 9.95e- 1 0.2 9.95e- 1 #> 6 6 59.3 2090. 2090. 1.00e+ 0 0.2 1.00e+ 0 #> 7 7 65.0 2747. 2747. 1.00e+ 0 0.2 1.00e+ 0 #> 8 8 69.9 3412. 3412. 1.00e+ 0 0.2 1.00e+ 0 #> 9 9 74.1 4065. 4065. 1 e+ 0 0.2 1 e+ 0 #> 10 10 77.7 4689. 4689. 1 e+ 0 0.2 1 e+ 0 #> 11 11 80.8 5274. 5274. 1 e+ 0 0.2 1 e+ 0 #> 12 12 83.5 5816. 5816. 1 e+ 0 0.2 1 e+ 0 #> 13 13 85.8 6310. 6310. 1 e+ 0 0.2 1 e+ 0 #> 14 14 87.8 6758. 6758. 1 e+ 0 0.2 1 e+ 0 #> 15 15 89.5 7160. 7160. 1 e+ 0 0.2 1 e+ 0 #> 16 16 90.9 7518. 7518. 1 e+ 0 0.2 1 e+ 0 #> 17 17 92.2 7836. 7836. 1 e+ 0 0.2 1 e+ 0 #> 18 18 93.3 8116. 8116. 1 e+ 0 0.2 1 e+ 0 #> 19 19 94.2 8363. 8363. 1 e+ 0 0.2 1 e+ 0 #> 20 20 95.0 8580. 8580. 1 e+ 0 0.2 1 e+ 0 #> # ℹ 4 more variables: Retention , FishingMortality , #> # Survivorship , FishedSurvivorship ypr_tabulate_schedule(ypr_ecotypes(Linf = c(10, 20))) #> # A tibble: 40 × 13 #> Age Length Weight Fecundity Spawning NaturalMortality Vulnerability #> #> 1 1 1.39 0.0270 0.0270 3.13e-156 0.2 3.13e-156 #> 2 2 2.59 0.174 0.174 2.91e-129 0.2 2.91e-129 #> 3 3 3.62 0.476 0.476 1.04e-114 0.2 1.04e-114 #> 4 4 4.51 0.918 0.918 3.46e-105 0.2 3.46e-105 #> 5 5 5.28 1.47 1.47 2.17e- 98 0.2 2.17e- 98 #> 6 6 5.93 2.09 2.09 2.75e- 93 0.2 2.75e- 93 #> 7 7 6.50 2.75 2.75 2.50e- 89 0.2 2.50e- 89 #> 8 8 6.99 3.41 3.41 3.46e- 86 0.2 3.46e- 86 #> 9 9 7.41 4.06 4.06 1.18e- 83 0.2 1.18e- 83 #> 10 10 7.77 4.69 4.69 1.37e- 81 0.2 1.37e- 81 #> # ℹ 30 more rows #> # ℹ 6 more variables: Retention , FishingMortality , #> # Survivorship , FishedSurvivorship , Ecotype , #> # Proportion "},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"Tabulate Stock-Recruitment Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"","code":"ypr_tabulate_sr(object, ...) # Default S3 method ypr_tabulate_sr( object, Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... ) # S3 method for class 'ypr_populations' ypr_tabulate_sr( object, Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"object population populations. ... Unused parameters. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. flag specifying whether include parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"data.frame stock-recruitment parameters.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"ypr_tabulate_sr(default): Tabulate Stock-Recruitment Parameters ypr_tabulate_sr(ypr_populations): Tabulate Stock-Recruitment Parameters","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_sr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Stock-Recruitment Parameters — ypr_tabulate_sr","text":"","code":"ypr_tabulate_sr(ypr_population()) # Beverton-Holt #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 2386. 0.667 1.33 3600. #> 2 actual 0.2 0.2 272. 0.186 0.211 2580. #> 3 optimal 0.115 0.115 853. 0.417 0.582 2933. ypr_tabulate_sr(ypr_population(BH = 0L)) # Ricker #> # A tibble: 3 × 7 #> Type pi u Eggs Recruits Spawners Fecundity #> #> 1 unfished 0 0 3563. 0.995 1.98 3600. #> 2 actual 0.2 0.2 667. 0.455 0.517 2580. #> 3 optimal 0.135 0.135 1485. 0.787 1.04 2844. ypr_tabulate_sr(ypr_populations(Rk = c(2.5, 4.6))) #> # A tibble: 6 × 8 #> Type pi u Eggs Recruits Spawners Fecundity Rk #> #> 1 unfished 0 0 2148. 0.6 1.19 3600. 2.5 #> 2 actual 0.2 0.2 33.6 0.0230 0.0261 2580. 2.5 #> 3 optimal 0.0936 0.0936 818. 0.364 0.538 3041. 2.5 #> 4 unfished 0 0 2801. 0.783 1.56 3600. 4.6 #> 5 actual 0.2 0.2 687. 0.469 0.533 2580. 4.6 #> 6 optimal 0.171 0.171 851. 0.522 0.633 2688. 4.6"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Yield — ypr_tabulate_yield","title":"Tabulate Yield — ypr_tabulate_yield","text":"Tabulate Yield","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Yield — ypr_tabulate_yield","text":"","code":"ypr_tabulate_yield(object, ...) # Default S3 method ypr_tabulate_yield( object, Ly = 0, harvest = TRUE, biomass = FALSE, type = \"both\", all = FALSE, ... ) # S3 method for class 'ypr_populations' ypr_tabulate_yield( object, Ly = 0, harvest = TRUE, biomass = FALSE, type = \"both\", all = FALSE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Yield — ypr_tabulate_yield","text":"object population populations. ... Unused parameters. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. type string indicating whether include '' just 'actual' 'optimal' yield. flag specifying whether include parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Yield — ypr_tabulate_yield","text":"data frame.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Tabulate Yield — ypr_tabulate_yield","text":"ypr_tabulate_yield(default): Tabulate Yield ypr_tabulate_yield(ypr_populations): Tabulate Yield","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yield.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Yield — ypr_tabulate_yield","text":"","code":"ypr_tabulate_yield(ypr_population()) #> # A tibble: 2 × 8 #> Type pi u Yield Age Length Weight Effort #> #> 1 actual 0.2 0.2 0.0422 6.77 62.1 2580. 2.12 #> 2 optimal 0.115 0.115 0.0670 7.36 64.6 2933. 1.16 ypr_tabulate_yield(ypr_populations(Rk = c(3, 5))) #> # A tibble: 4 × 9 #> Type pi u Yield Age Length Weight Effort Rk #> #> 1 actual 0.2 0.2 0.0422 6.77 62.1 2580. 2.12 3 #> 2 optimal 0.115 0.115 0.0670 7.36 64.6 2933. 1.16 3 #> 3 actual 0.2 0.2 0.116 6.77 62.1 2580. 2.12 5 #> 4 optimal 0.183 0.183 0.117 6.87 62.6 2641. 1.92 5"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":null,"dir":"Reference","previous_headings":"","what":"Tabulate Yields — ypr_tabulate_yields","title":"Tabulate Yields — ypr_tabulate_yields","text":"Tabulate Yields","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tabulate Yields — ypr_tabulate_yields","text":"","code":"ypr_tabulate_yields(object, ...) # Default S3 method ypr_tabulate_yields( object, pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... ) # S3 method for class 'ypr_populations' ypr_tabulate_yields( object, pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE, all = FALSE, ... )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tabulate Yields — ypr_tabulate_yields","text":"object population populations. ... Unused parameters. pi vector probabilities capture calculate yield . Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. flag specifying whether include parameter values.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tabulate Yields — ypr_tabulate_yields","text":"data frame.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Tabulate Yields — ypr_tabulate_yields","text":"ypr_tabulate_yields(default): Tabulate Yields ypr_tabulate_yields(ypr_populations): Tabulate Yields","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_tabulate_yields.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tabulate Yields — ypr_tabulate_yields","text":"","code":"ypr_tabulate_yields(ypr_population()) #> # A tibble: 100 × 7 #> pi u Yield Age Length Weight Effort #> #> 1 0 0 0 NA NA NA 0 #> 2 0.0101 0.0101 0.0126 8.42 68.5 3532. 0.0964 #> 3 0.0202 0.0202 0.0236 8.30 68.0 3466. 0.194 #> 4 0.0303 0.0303 0.0331 8.18 67.6 3402. 0.292 #> 5 0.0404 0.0404 0.0413 8.07 67.2 3339. 0.391 #> 6 0.0505 0.0505 0.0482 7.96 66.8 3279. 0.492 #> 7 0.0606 0.0606 0.0539 7.86 66.5 3220. 0.593 #> 8 0.0707 0.0707 0.0585 7.76 66.1 3163. 0.696 #> 9 0.0808 0.0808 0.0620 7.66 65.7 3108. 0.800 #> 10 0.0909 0.0909 0.0646 7.57 65.4 3054. 0.905 #> # ℹ 90 more rows ypr_tabulate_yields( ypr_populations( Rk = c(3, 5) ), pi = seq(0, 1, length.out = 10) ) #> # A tibble: 20 × 8 #> pi u Yield Age Length Weight Effort Rk #> #> 1 0 0 0 NA NA NA 0 3 #> 2 0.111 0.111 0.0669 7.40 64.7 2953. 1.12 3 #> 3 0.222 0.222 0.0288 6.64 61.6 2504. 2.39 3 #> 4 0.333 0.333 0 NA NA NA 3.85 3 #> 5 0.444 0.444 0 NA NA NA 5.58 3 #> 6 0.556 0.556 0 NA NA NA 7.70 3 #> 7 0.667 0.667 0 NA NA NA 10.4 3 #> 8 0.778 0.778 0 NA NA NA 14.3 3 #> 9 0.889 0.889 0 NA NA NA 20.9 3 #> 10 1 1 0 NA NA NA Inf 3 #> 11 0 0 0 NA NA NA 0 5 #> 12 0.111 0.111 0.103 7.40 64.7 2953. 1.12 5 #> 13 0.222 0.222 0.114 6.64 61.6 2504. 2.39 5 #> 14 0.333 0.333 0.0750 6.15 59.3 2196. 3.85 5 #> 15 0.444 0.444 0.00589 5.80 57.5 1979. 5.58 5 #> 16 0.556 0.556 0 NA NA NA 7.70 5 #> 17 0.667 0.667 0 NA NA NA 10.4 5 #> 18 0.778 0.778 0 NA NA NA 14.3 5 #> 19 0.889 0.889 0 NA NA NA 20.9 5 #> 20 1 1 0 NA NA NA Inf 5 ypr_tabulate_yields(ypr_ecotypes(Linf = c(10, 20))) #> # A tibble: 100 × 7 #> pi u Yield Age Length Weight Effort #> #> 1 0 0 0 NA NA NA 0 #> 2 0.0101 0.0101 9.03e-47 19.2 18.9 67.2 0.0964 #> 3 0.0202 0.0202 1.81e-46 19.2 18.9 67.2 0.194 #> 4 0.0303 0.0303 2.71e-46 19.2 18.9 67.2 0.292 #> 5 0.0404 0.0404 3.61e-46 19.2 18.9 67.2 0.391 #> 6 0.0505 0.0505 4.52e-46 19.2 18.9 67.2 0.492 #> 7 0.0606 0.0606 5.42e-46 19.2 18.9 67.2 0.593 #> 8 0.0707 0.0707 6.32e-46 19.2 18.9 67.2 0.696 #> 9 0.0808 0.0808 7.22e-46 19.2 18.9 67.2 0.800 #> 10 0.0909 0.0909 8.13e-46 19.2 18.9 67.2 0.905 #> # ℹ 90 more rows"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":null,"dir":"Reference","previous_headings":"","what":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"Update YPR Object Currently just works scalar parameters populations ecotypes.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"","code":"ypr_update(x, ...) # S3 method for class 'ypr_population' ypr_update(x, ...) # S3 method for class 'ypr_populations' ypr_update(x, ...) # S3 method for class 'ypr_ecotypes' ypr_update(x, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"x population, populations ecotypes object update. ... One parameter values ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"methods-by-class-","dir":"Reference","previous_headings":"","what":"Methods (by class)","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"ypr_update(ypr_population): Update Population Parameters ypr_update(ypr_populations): Update Populations Parameters ypr_update(ypr_ecotypes): Update Populations Parameters","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_update.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Update a YPR Object Currently just works with scalar parameters for populations and ecotypes. — ypr_update","text":"","code":"ypr_update(ypr_population(), Rk = 2.5) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_update(ypr_populations(Rk = c(2.5, 4)), Rk = 2.5) #> tmax: 20 #> k: 0.15 #> Linf: 100 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 2.5 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 ypr_update(ypr_ecotypes(Linf = c(2.5, 4)), k = 1.5) #> tmax: 20 #> k: 1.5 #> Linf: 2.5, 4 #> t0: 0 #> k2: 0.15 #> Linf2: 100 #> L2: 1000 #> Wb: 3 #> Ls: 50 #> Sp: 100 #> es: 1 #> Sm: 0 #> fb: 1 #> tR: 1 #> BH: 1 #> Rk: 3 #> n: 0.2 #> nL: 0.2 #> Ln: 1000 #> Lv: 50 #> Vp: 100 #> Llo: 0 #> Lup: 1000 #> Nc: 0 #> pi: 0.2 #> rho: 0 #> Hm: 0 #> Rmax: 1 #> Wa: 0.01 #> fa: 1 #> q: 0.1 #> RPR: 1 #> Ecotype: Linf_2_5, Linf_4"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":null,"dir":"Reference","previous_headings":"","what":"Yield — ypr_yield","title":"Yield — ypr_yield","text":"Calculates yield population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Yield — ypr_yield","text":"","code":"ypr_yield(object, Ly = 0, harvest = TRUE, biomass = FALSE, ...)"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Yield — ypr_yield","text":"object population populations. Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals. ... Unused parameters.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Yield — ypr_yield","text":"yield number fish biomass.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Yield — ypr_yield","text":"default, Rmax = 1 number individuals proportion recruits carrying capacity. yield given terms biomass (kg) scaling also depends value Wa (g).","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yield.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Yield — ypr_yield","text":"","code":"ypr_yield(ypr_population()) #> [1] 0.04220691 #> attr(,\"Age\") #> [1] 6.7687 #> attr(,\"Length\") #> [1] 62.13068 #> attr(,\"Weight\") #> [1] 2580.272 #> attr(,\"Effort\") #> [1] 2.117905 ypr_yield(ypr_ecotypes(Linf = c(100, 200))) #> [1] 0 #> attr(,\"Age\") #> [1] NA #> attr(,\"Length\") #> [1] NA #> attr(,\"Weight\") #> [1] NA #> attr(,\"Effort\") #> [1] 2.117905"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":null,"dir":"Reference","previous_headings":"","what":"Yields — ypr_yields","title":"Yields — ypr_yields","text":"Calculates yield(s) population based one capture rates.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Yields — ypr_yields","text":"","code":"ypr_yields( object, pi = seq(0, 1, length.out = 100), Ly = 0, harvest = TRUE, biomass = FALSE )"},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Yields — ypr_yields","text":"object population populations. pi vector probabilities capture calculate yield . Ly minimum length (trophy) fish consider calculating yield (cm). harvest flag specifying whether calculate yield harvested fish captures. biomass flag specifying whether calculate yield terms biomass versus number individuals.","code":""},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Yields — ypr_yields","text":"numeric vector yields.","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/reference/ypr_yields.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Yields — ypr_yields","text":"","code":"pi <- seq(0, 1, length.out = 30) plot(pi, ypr_yields(ypr_population(), pi), type = \"l\")"},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-0609000","dir":"Changelog","previous_headings":"","what":"ypr 0.6.0.9000","title":"ypr 0.6.0.9000","text":"previous version.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-060","dir":"Changelog","previous_headings":"","what":"ypr 0.6.0","title":"ypr 0.6.0","text":"CRAN release: 2022-08-29 Rk now egg tR survival 0 1.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-052","dir":"Changelog","previous_headings":"","what":"ypr 0.5.2","title":"ypr 0.5.2","text":"CRAN release: 2021-07-03 Internal changes .","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-051","dir":"Changelog","previous_headings":"","what":"ypr 0.5.1","title":"ypr 0.5.1","text":"CRAN release: 2020-07-10 House-keeping.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-050","dir":"Changelog","previous_headings":"","what":"ypr 0.5.0","title":"ypr 0.5.0","text":"CRAN release: 2020-03-18 Pass yield parameters Ly, harvest biomass ypr_report(). Removed suggests dependency checkr.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-040","dir":"Changelog","previous_headings":"","what":"ypr 0.4.0","title":"ypr 0.4.0","text":"CRAN release: 2020-01-13","code":""},{"path":[]},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"population-parameters-0-4-0","dir":"Changelog","previous_headings":"","what":"Population Parameters","title":"ypr 0.4.0","text":"Replaced parameters M (annual instantaneous natural mortality rate) Mb (annual instantaneous natural mortality rate (function length) scaling exponent) A0 (initial post age tR density independent mortality probability) n (annual natural mortality rate age tR length Ln) nL (annual natural mortality rate length Ln) Ln (length natural mortality rate switches n nA) Added parameters k2, Linf2 L2 allow biphasic growth. Set Lp value 1000 opposed Linf. Set Ls Lv arguments 50 opposed Linf/2. Allow L2, Ln, Ls Lv also take ages (negative values).","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"populations-0-4-0","dir":"Changelog","previous_headings":"","what":"Population(s)","title":"ypr 0.4.0","text":"Added expand = TRUE argument ypr_populations() allow control combinations. Added ypr_populations_expand() create combinations parameters. Added ypr_populations_update() (well update.ypr_population() update.ypr_populations()). ypr_populations longer requires names. Added ypr_population_names() allow user generate names. Added as_ypr_populations.data.frame(). Added data.frame.ypr_population() data.frame.ypr_populations(). Added ypr_age_at_length() get ages specific lengths given population. Added ypr_length_at_age() get lengths specific ages given population.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"population-reports-0-4-0","dir":"Changelog","previous_headings":"","what":"Population Reports","title":"ypr 0.4.0","text":"Added description = \"\" argument ypr_report() allow user describe report. ypr_report() now starts table parameter values parameter descriptions. Added view = FALSE argument ypr_report() allow user view report browser. Added ask = TRUE argument ypr_report() ask overwriting creating file. Deprecated requirement provide file extension ypr_report(). Soft deprecated ypr_schedule() ypr_tabulate_schedule().","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"plots-0-4-0","dir":"Changelog","previous_headings":"","what":"Plots","title":"ypr 0.4.0","text":"Added plot biomass eggs report. Added percent = FALSE argument ypr_plot_fish()","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"tables-0-4-0","dir":"Changelog","previous_headings":"","what":"Tables","title":"ypr 0.4.0","text":"Added ypr_tabulate_biomass() easily calculate total biomass eggs. Renamed column HandlingMortality HandlingMortalities ypr_tabulate_fish() ypr_plot_fish(). Renamed column Spawning Spawners ypr_tabulate_fish() ypr_plot_fish().","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"bug-fixes-0-4-0","dir":"Changelog","previous_headings":"","what":"Bug Fixes","title":"ypr 0.4.0","text":"Improved handling unsustainable populations (longer negative fish numbers).","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-031","dir":"Changelog","previous_headings":"","what":"ypr 0.3.1","title":"ypr 0.3.1","text":"CRAN release: 2019-04-26 ypr_populations() now generates names Fixed Quesnel Lake Trout Rainbow Trout mix ","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-030","dir":"Changelog","previous_headings":"","what":"ypr 0.3.0","title":"ypr 0.3.0","text":"CRAN release: 2018-11-26 Now uses q instead Ea Eb effort Parameter Rk now greater >= 1","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-020","dir":"Changelog","previous_headings":"","what":"ypr 0.2.0","title":"ypr 0.2.0","text":"Added ypr_exploitation() convert capture probabilities exploitation probabilities. Added ypr_report() generate Rmd file population. Can now pass Rk egg recruit survival (low density). Set default value Wa 0.01. Added ypr_populations() generate combinations parameters. Made ypr_tabulate_sr(), ypr_tabulate_yield(), ypr_tabulate_yields(), ypr_plot_yield() generic definitions ypr_population ypr_populations objects. Added scaling parameter A0 initial interval mortality recruits. Added scaling parameters Ea Eb allow plots yield per effort. Added Age, Length, Weight Effort ypr_tabulate_yield() added ypr_tabulate_yields() Added y arg ypr_plot_yield() allow plotting mean age, length, weight, effort yield per effort exploitation capture probability. Added ypr_plot_histogram() plot frequency distributions catch, spawners lake age, length weight bins. Added ypr_tabulate_parameters() get table parameters, values descriptions ypr_detabulate_parameters() convert back population object. Added ypr_tabulate_sr() get table eggs recruits unfished, actual optimal rates. Added print.ypr_population().","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-010","dir":"Changelog","previous_headings":"","what":"ypr 0.1.0","title":"ypr 0.1.0","text":"Added Mb scale mortality length BH distinguish Beverton-Holt Ricker curves es probability mature fish spawning Sm spawning mortality probability Sp spawning power vulnerability power Vp slot limit non-complicance parameter Nc scaling parameter R0. Added ypr_population_update() update population parameters. Added ypr_yield_tabulate() tabulate actual optimal yields. Added ypr_sr() get stock recruitment parameters ypr_plot_sr() plot. Added ypr_inst2inter() ypr_inter2instant() convert mortality rates. Switched nu M R0 Rmax. Switched yield parameters harvest biomass FALSE default. Renamed Wa b Wb eta Hm mu pi Rt tR. Removed Capture (covered single value) TotalMortality schedule added Spawning.","code":""},{"path":"https://poissonconsulting.github.io/ypr/news/index.html","id":"ypr-001","dir":"Changelog","previous_headings":"","what":"ypr 0.0.1","title":"ypr 0.0.1","text":"Initial Release","code":""}]