From a5e5f17674f4682d1e4ba4f66836037db823576e Mon Sep 17 00:00:00 2001
From: Johannes Kruisselbrink <jwkruisselbrink@gmail.com>
Date: Wed, 23 Oct 2024 15:38:47 +0200
Subject: [PATCH] Update annotations

---
 model/euromix.annotations.csv | 12 ++++++------
 model/euromix.sbml            | 20 ++++++++++----------
 2 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/model/euromix.annotations.csv b/model/euromix.annotations.csv
index 82a3d72..e3d0305 100644
--- a/model/euromix.annotations.csv
+++ b/model/euromix.annotations.csv
@@ -18,13 +18,13 @@ Liver,compartment,liver,L,,,,Liver compartment.,
 Liver,compartment,,,rdf,BQB_IS,http://purl.obolibrary.org/obo/UBERON_0002107,,
 Poor,compartment,poorly perfused tissue,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00465,Poorly perfused tissue compartment.,
 Skin_e,compartment,viable epidermis exposed skin,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00467,Viable epidermis of exposed skin compartment.,
-Skin_e,compartment,,,rdf,BQB_IS,http://purl.obolibrary.org/obo/UBERON_0002097,,
+Skin_e,compartment,,,rdf,BQB_IS_PART_OF,http://purl.obolibrary.org/obo/UBERON_0002097,,
 Skin_u,compartment,viable epidermis unexposed skin,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00466,Viable epidermis of unexposed skin compartment.,
-Skin_u,compartment,,,rdf,BQB_IS,http://purl.obolibrary.org/obo/UBERON_0002097,,
-Skin_sc_e,compartment,stratum corneum exposed skin,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00469,Stratum corneum of exposed skin compartment.,
-Skin_sc_e,compartment,,,rdf,BQB_IS,http://purl.obolibrary.org/obo/UBERON_0002027,,
-Skin_sc_u,compartment,stratum corneum unexposed skin,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00468,Stratum corneum of unexposed skin compartment.,
-Skin_sc_u,compartment,,,rdf,BQB_IS,http://purl.obolibrary.org/obo/UBERON_0002027,,
+Skin_u,compartment,,,rdf,BQB_IS_PART_OF,http://purl.obolibrary.org/obo/UBERON_0002097,,
+Skin_sc_e,compartment,stratum corneum exposed skin,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00458,Stratum corneum of exposed skin compartment.,
+Skin_sc_e,compartment,,,rdf,BQB_IS_PART_OF,http://purl.obolibrary.org/obo/UBERON_0002027,,
+Skin_sc_u,compartment,stratum corneum unexposed skin,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00457,Stratum corneum of unexposed skin compartment.,
+Skin_sc_u,compartment,,,rdf,BQB_IS_PART_OF,http://purl.obolibrary.org/obo/UBERON_0002027,,
 Ven,compartment,venous blood,L,rdf,BQM_IS,http://purl.obolibrary.org/obo/PBPKO_00463,Venous blood compartment.,
 Ven,compartment,,,rdf,BQB_IS,http://purl.obolibrary.org/obo/UBERON_0013756,,
 QFat,species,quantity in fat tissues,mmol,rdf,BQB_IS,http://identifiers.org/SBO:0000247,simple chemical,
diff --git a/model/euromix.sbml b/model/euromix.sbml
index 0acbcaa..c04c103 100644
--- a/model/euromix.sbml
+++ b/model/euromix.sbml
@@ -322,11 +322,11 @@
                   <rdf:li rdf:resource="http://purl.obolibrary.org/obo/PBPKO_00467"/>
                 </rdf:Bag>
               </bqmodel:is>
-              <bqbiol:is>
+              <bqbiol:isPartOf>
                 <rdf:Bag>
                   <rdf:li rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002097"/>
                 </rdf:Bag>
-              </bqbiol:is>
+              </bqbiol:isPartOf>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
@@ -340,11 +340,11 @@
                   <rdf:li rdf:resource="http://purl.obolibrary.org/obo/PBPKO_00466"/>
                 </rdf:Bag>
               </bqmodel:is>
-              <bqbiol:is>
+              <bqbiol:isPartOf>
                 <rdf:Bag>
                   <rdf:li rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002097"/>
                 </rdf:Bag>
-              </bqbiol:is>
+              </bqbiol:isPartOf>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
@@ -355,14 +355,14 @@
             <rdf:Description rdf:about="#meta_Skin_sc_e">
               <bqmodel:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="http://purl.obolibrary.org/obo/PBPKO_00469"/>
+                  <rdf:li rdf:resource="http://purl.obolibrary.org/obo/PBPKO_00458"/>
                 </rdf:Bag>
               </bqmodel:is>
-              <bqbiol:is>
+              <bqbiol:isPartOf>
                 <rdf:Bag>
                   <rdf:li rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002027"/>
                 </rdf:Bag>
-              </bqbiol:is>
+              </bqbiol:isPartOf>
             </rdf:Description>
           </rdf:RDF>
         </annotation>
@@ -373,14 +373,14 @@
             <rdf:Description rdf:about="#meta_Skin_sc_u">
               <bqmodel:is>
                 <rdf:Bag>
-                  <rdf:li rdf:resource="http://purl.obolibrary.org/obo/PBPKO_00468"/>
+                  <rdf:li rdf:resource="http://purl.obolibrary.org/obo/PBPKO_00457"/>
                 </rdf:Bag>
               </bqmodel:is>
-              <bqbiol:is>
+              <bqbiol:isPartOf>
                 <rdf:Bag>
                   <rdf:li rdf:resource="http://purl.obolibrary.org/obo/UBERON_0002027"/>
                 </rdf:Bag>
-              </bqbiol:is>
+              </bqbiol:isPartOf>
             </rdf:Description>
           </rdf:RDF>
         </annotation>