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Observed behavior:
Sometimes when using collect_aa_sequences, some accession numbers cannot be found or the phosphosite is incorrectly annotated for the corresponding accession, resulting in a string of underscores being returned.
Expected behavior:
make_module_sequence_dict should filter out peptides that are exclusively underscores, maybe even provide an option to filter out ones that have more than 50% underscores.
Observed behavior:
Sometimes when using collect_aa_sequences, some accession numbers cannot be found or the phosphosite is incorrectly annotated for the corresponding accession, resulting in a string of underscores being returned.
phosphodisco/phosphodisco/classes.py
Line 521 in 90460e4
Expected behavior:
make_module_sequence_dict should filter out peptides that are exclusively underscores, maybe even provide an option to filter out ones that have more than 50% underscores.
phosphodisco/phosphodisco/motif_analysis.py
Line 68 in 90460e4
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