4/4/14 RTK 6/2/16 RTK; update v2.2.5 11/4/16 RTK; update v2.3 and download, script commands
Script to download and build Vienna library.
From top vertools directory:
scripts/get_build_Vienna.sh
Note: The above script downloads Vienna and builds it all in a subdir; The only file that is needed for vertools is the library: "libRNA.a" The script does not remove the download / build Vienna package.
Steps to set things up manually; The above script does all of this.
Download ViennaRNA source package from:
https://www.tbi.univie.ac.at/RNA/
... Or ...
wget https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_3_x/ViennaRNA-2.3.0.tar.gz
Unpack and build via supplied configure script; Put package in local dir (here) via "--prefix"; The "--disable-openmp" is needed to build without openmp (DNA software?)
Untar, cd in and configure
tar -xvzf ViennaRNA-2.3.tar.gz
cd ViennaRNA-2.3
./configure --prefix $progs/ViennaFoldLib/ --disable-openmp
make
make clean
Copy to code / vertools dir
find . -name "libRNA.a" -exec cp {} $cdir \;
find . -name "libRNA.a" -exec cp {} $gitdir/vertools \;