From 953515eff176346b9d0b4c526bbb6702387443f3 Mon Sep 17 00:00:00 2001 From: Victoria Carr Date: Tue, 5 Apr 2022 16:57:47 +0100 Subject: [PATCH 1/4] Acknowledgements --- F2/endF2.md | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/F2/endF2.md b/F2/endF2.md index 807915e..8dcdf8c 100644 --- a/F2/endF2.md +++ b/F2/endF2.md @@ -4,4 +4,20 @@ Please complete this short [Google Form](https://docs.google.com/forms/d/1mjLhb3JeLrYZsajrglXVJHW99z9viCQ1UJ8l773_Q18/edit) to let us know how you found this training module, what topics you would like to be covered in the ‘wrap-up’ webinar and to register your interest for advanced genomics training (in-person or online). +# Acknowledgements + +Many thanks to all those involved in the making of Fundamental 2 from providing feedback on the material and their helpful suggestions and refinements. + +**Programme Lead** +
Prof. Stephen Bentley + +**Educators** +
Narender Kumar, Kate Mellor, Stephanie W. Lo, Victoria Carr, Uzma Khan, Jolynne Mokaya, Ana Ferreira, Gemma Murray. + +**Contributors** +
Narender Kumar, Kate Mellor, Christine Boinett, Victoria Carr, Nil Shchelov, Jolynne Mokaya, Ana Ferreira, John Lees, Stephanie W. Lo, Stephen Bentley, members of the [Bentley Group](https://bentleygroup.sanger.ac.uk/#team), members of the [Centre for Genomic Pathogen Surveillance](https://www.pathogensurveillance.net/) and members of the [Pathogen Informatics team](https://www.sanger.ac.uk/science/groups/pathogen-informatics). + +**Funding** +
The training is provided as part of the [Juno](https://www.gbsgen.net/) and[ GPS2](https://www.pneumogen.net/gps/) projects funded by [The Bill and Melinda Gates Foundation](https://www.gatesfoundation.org/). +
© [Wellcome Sanger Institute](https://www.sanger.ac.uk/) From 73410117c22c7d29e19865244cc992e912d62a17 Mon Sep 17 00:00:00 2001 From: Victoria Carr Date: Tue, 5 Apr 2022 17:02:09 +0100 Subject: [PATCH 2/4] typo --- F2/endF2.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/F2/endF2.md b/F2/endF2.md index 8dcdf8c..ecd7073 100644 --- a/F2/endF2.md +++ b/F2/endF2.md @@ -18,6 +18,6 @@ Many thanks to all those involved in the making of Fundamental 2 from providing
Narender Kumar, Kate Mellor, Christine Boinett, Victoria Carr, Nil Shchelov, Jolynne Mokaya, Ana Ferreira, John Lees, Stephanie W. Lo, Stephen Bentley, members of the [Bentley Group](https://bentleygroup.sanger.ac.uk/#team), members of the [Centre for Genomic Pathogen Surveillance](https://www.pathogensurveillance.net/) and members of the [Pathogen Informatics team](https://www.sanger.ac.uk/science/groups/pathogen-informatics). **Funding** -
The training is provided as part of the [Juno](https://www.gbsgen.net/) and[ GPS2](https://www.pneumogen.net/gps/) projects funded by [The Bill and Melinda Gates Foundation](https://www.gatesfoundation.org/). +
The training is provided as part of the [JUNO](https://www.gbsgen.net/) and [GPS2](https://www.pneumogen.net/gps/) projects funded by [The Bill and Melinda Gates Foundation](https://www.gatesfoundation.org/).
© [Wellcome Sanger Institute](https://www.sanger.ac.uk/) From f5c7b134d1864c353a096992c8ba21b63694d826 Mon Sep 17 00:00:00 2001 From: Victoria Carr Date: Wed, 6 Apr 2022 09:20:51 +0100 Subject: [PATCH 3/4] Typo --- F2/endF2.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/F2/endF2.md b/F2/endF2.md index ecd7073..c5f8ac5 100644 --- a/F2/endF2.md +++ b/F2/endF2.md @@ -6,7 +6,7 @@ Please complete this short [Google Form](https://docs.google.com/forms/d/1mjLhb3 # Acknowledgements -Many thanks to all those involved in the making of Fundamental 2 from providing feedback on the material and their helpful suggestions and refinements. +Many thanks to all those involved in the making of Fundamental 2 for providing feedback on the material and their helpful suggestions and refinements. **Programme Lead**
Prof. Stephen Bentley From e3e7cd94d79dac5c1e392498f19f5151a58cf8ad Mon Sep 17 00:00:00 2001 From: Victoria Carr Date: Wed, 6 Apr 2022 09:21:03 +0100 Subject: [PATCH 4/4] Update deploy instructions --- README.md | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index fe58600..d3b8bcf 100644 --- a/README.md +++ b/README.md @@ -16,19 +16,25 @@ Try to avoid embedding HTML in the markdown files if possible. ### References All references, in links and images, should be relative to the project root, eg. `/F1/microreact.md`. -### Deployment -Build image: +## Deploying live website +1. If the last commit hasn't been tagged, tag the repo following versioning convention in current tags e.g. `v0.1.13` + +2. Build image using tag version (without the v e.g. `0.1.13`). The `` must be the name of the docker repository you plan to use + ``` cd bactgen-training-app docker build -t /bactgen-training-app: . ``` -Push image: +3. Push image to repository of `` + ``` docker push /bactgen-training-app: ``` -Deploy the website to the server (you must have ssh access to the host address): +4. Deploy the website to the server. +You must have ssh access to the host address. If you do not then the recent contributors of this repo that still work at the Sanger should already have access. You can ask them to add your public ssh key. Additional information on remote users and host addresses can be found [here](http://mediawiki.internal.sanger.ac.uk/index.php/Websites_managed_for_team_284_(Stephen_Bentley%27s_group)). + ``` ./deploy.sh ```