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DEPENDENCIES.md

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Pipeline dependencies

This pipeline has the following dependencies:

  • hisat2 (tested with 2.0.5).
  • samtools (tested with 1.3.1).
  • Stringtie (tested with 1.3.1c.Linux_x86_64).
  • R (tested with 3.3.2).
  • Ballgown (tested with 2.6.0)