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DEPENDENCIES.md

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Pipeline dependencies

This pipeline has the following dependencies:

  • pegi3s/r_deseq2 (tested with 1.32.0).
  • pegi3s/r_edger (tested with 3.36.0).
  • pegi3s/r_enhanced-volcano (tested with 1.12.0).
  • pegi3s/cutadapt (tested with 1.16).
  • pegi3s/fastqc (tested with 0.11.9).
  • pegi3s/bowtie1 (tested with 1.2.3).
  • pegi3s/feature-counts (tested with 2.0.0).
  • pegi3s/samtools_bcftools (tested with 1.9).
  • pegi3s/samtools_bcftools (tested with 1.10).
  • pegi3s/r_data-analysis (tested with 4.1.1).
  • pegi3s/r_venn-diagram (tested with 1.7.0).
  • python3 (tested with 3.8.5).
  • pegi3s/r_network (tested with 4.7.1_v2).
  • pegi3s/multiqc (tested with 1.14.0).
  • DIANA Tarbase annotations (tested with 8).
  • Reactome annotations (tested with 83).