python-tiledbsoma-ml.yml

name: python-tiledbsoma-ml CI

on:
  pull_request:
    branches: ["**"]
    paths-ignore:
      - "scripts/**"
      - "notebooks/**"
  push:
    branches: [main]
    paths-ignore:
      - "scripts/**"
      - "notebooks/**"
  workflow_dispatch:

jobs:
  lint:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.11"

      - name: Restore pre-commit cache
        uses: actions/cache@v4
        with:
          path: ~/.cache/pre-commit
          key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}

      - name: Install pre-commit
        run: pip -v install pre-commit

      - name: Run pre-commit hooks on all files
        run: pre-commit run -v -a

  tests:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip

      - name: Install prereqs
        run: |
          pip install --upgrade pip wheel pytest pytest-cov setuptools
          pip install .

      - name: Run tests
        run: pytest -v --cov=src --cov-report=xml tests

  build:
    # for now, just do a test build to ensure that it works
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: "3.11"

      - name: Do build
        run: |
          pip install --upgrade build pip wheel setuptools setuptools-scm
          python -m build .