From 96c1516e300291eeaa9f46965bd325a28cb64b4b Mon Sep 17 00:00:00 2001
From: Bruce Martin <bruce.martin@tiledb.com>
Date: Thu, 19 Sep 2024 10:36:57 -0700
Subject: [PATCH] Package dependency pins & test (#2)

* add minimum version for several dependencies

* add compat test for primary dependencies

* fix typo in workflow

* fix another typo

* compat matrix refinement

* fix quoting

* refine compat test matrix

* further simplify matrix

* update changelog to use correct links (#3)
---
 .../python-tilledbsoma-ml-compat.yml          | 46 +++++++++++++++++++
 CHANGELOG.md                                  |  8 +++-
 pyproject.toml                                |  6 +--
 3 files changed, 55 insertions(+), 5 deletions(-)
 create mode 100644 .github/workflows/python-tilledbsoma-ml-compat.yml

diff --git a/.github/workflows/python-tilledbsoma-ml-compat.yml b/.github/workflows/python-tilledbsoma-ml-compat.yml
new file mode 100644
index 0000000..61a5001
--- /dev/null
+++ b/.github/workflows/python-tilledbsoma-ml-compat.yml
@@ -0,0 +1,46 @@
+name: python-tiledbsoma-ml past tiledbsoma compat # Latest tiledbsoma version covered by another workflow
+
+on:
+  pull_request:
+    branches: ["*"]
+    paths-ignore:
+      - "scripts/**"
+      - "notebooks/**"
+  push:
+    branches: [main]
+    paths-ignore:
+      - "scripts/**"
+      - "notebooks/**"
+
+jobs:
+  unit_tests:
+    strategy:
+      fail-fast: false
+      matrix:
+        os: ["ubuntu-latest"]  # could add 'macos-latest', but the matrix is already huge...
+        python-version: ["3.9", "3.10", "3.11"]  # TODO: add 3.12 when tiledbsoma releases wheels for it.
+        pkg-version:
+          - "tiledbsoma~=1.9.0 'numpy<2.0.0'"
+          - "tiledbsoma~=1.10.0 'numpy<2.0.0'"
+          - "tiledbsoma~=1.11.0"
+          - "tiledbsoma~=1.12.0"
+          - "tiledbsoma~=1.13.0"
+          - "tiledbsoma~=1.14.0"
+
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: pip
+
+      - name: Install prereqs
+        run: |
+          pip install --upgrade pip pytest setuptools
+          pip install ${{ matrix.pkg-version }} .
+
+      - name: Run tests
+        run: pytest -v tests
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 6f0d697..957c631 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -8,12 +8,16 @@ and this project adheres to [Semantic Versioning](http://semver.org/).
 
 ## [Unreleased] - yyyy-mm-dd
 
-Porting and enhancing initial code contribution from the Chan Zuckerberg Initiative Foundation  
+Port and enhance contribution from the Chan Zuckerberg Initiative Foundation
 [CELLxGENE](https://cellxgene.cziscience.com/) project.
 
+This is not a one-for-one migration of the contributed code. Substantial changes have
+been made to the package utility (e.g., multi-GPU support), improve API usability, etc.
+
 ### Added
 
-- Initial commits via PR [#2823](https://github.com/single-cell-data/TileDB-SOMA/pull/2823)
+- Initial commits via [PR #1](https://github.com/single-cell-data/TileDB-SOMA-ML/pull/1)
+- Refine package dependency pins and compatibility tests via [PR #2](https://github.com/single-cell-data/TileDB-SOMA-ML/pull/2)
 
 ### Changed
 
diff --git a/pyproject.toml b/pyproject.toml
index ab21890..7901253 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,9 +6,9 @@ build-backend = "setuptools.build_meta"
 name = "tiledbsoma-ml"
 dynamic = ["version"]
 dependencies = [
-    "attrs",
-    "tiledbsoma",
-    "torch",
+    "attrs>=22.2",
+    "tiledbsoma>=1.9.0",
+    "torch>=2.0",
     "torchdata<=0.9",
     "numpy",
     "numba",