pyproject.toml

[project]
name = "datajoint-link"
description = "A tool for linking two DataJoint tables located on different database servers"
readme = "README.md"
authors = [
    {name = "Christoph Blessing", email = "33834216+cblessing24@users.noreply.github.com"},
]
dependencies = [
    "datajoint >= 0.12",
    "tqdm>=4.66.1",
]
requires-python = ">=3.8"
dynamic = ["version"]
license = {text = "GNU GPLv3"}
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Operating System :: OS Independent",
    "Topic :: Database",
]

[project.urls]
homepage = "https://github.com/sinzlab/link"

[tool.black]
line-length = 120

[tool.pylint.master]
max-line-length = 120
ignore-patterns = ["test_.*\\.py", "conftest\\.py"]
fail-on = ["useless-suppression"]

[tool.pylint.messages_control]
enable = ["useless-suppression"]
# duplicate-code can't be disabled on a per instance basis (https://github.com/PyCQA/pylint/issues/214)
disable = ["cyclic-import", "logging-fstring-interpolation", "duplicate-code"]

[tool.mypy]
python_version = "3.8"
files = [
    "link", 
    "tests",
    "stubs",
]
strict = false
mypy_path = "stubs"
warn_unused_ignores = true
warn_unused_configs = true
warn_redundant_casts = true
disallow_subclassing_any = true
check_untyped_defs = true
disallow_untyped_decorators = true
no_implicit_reexport = true
strict_equality = true
strict_concatenate = true
disallow_any_generics = true
disallow_untyped_calls = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
warn_return_any = true
enable_error_code = [
    "possibly-undefined",
]

[[tool.mypy.overrides]]
module = [
    "tests.docker.*",
    "tests.functional.*",
]
ignore_errors = true

[[tool.mypy.overrides]]
module = [
    "datajoint.*",
    "docker.*",
    "setuptools.*",
]
ignore_missing_imports = true

[tool.coverage.run]
branch = true
source = ["link"]

[tool.coverage.report]
exclude_lines = ["if TYPE_CHECKING:"]



[tool.pdm.version]
source = "scm"

[tool.pdm.dev-dependencies]
dev = [
    "pytest>=6.2",
    "pytest-sugar>=0.9",
    "pytest-cov>=2.11",
    "docker>=4.4",
    "pymysql>=1.0",
    "mypy>=0.812",
    "black>=22.10.0",
    "minio>=7.1.12",
    "neovim>=0.3.1",
    "pdbpp>=0.10.3",
    "ruff>=0.0.270",
    "types-tqdm>=4.66.0.4",
]

[tool.pdm.scripts]
lint_black = "black --check --diff ."
lint_mypy = "mypy"
lint_ruff = "ruff check ."
tests = "pytest -m 'not slow'"
functional_tests = "docker compose run functional_tests"

[build-system]
requires = ["pdm-backend"]
build-backend = "pdm.backend"

[tool.pytest.ini_options]
addopts = ["--quiet", "--strict-markers"]
testpaths = [
    "tests",
]
markers = [
    "slow: marks tests as slow (deselect with '-m \"not slow\"')"
]

[tool.ruff]
line-length = 120
select = ["E", "F", "I", "D", "PL", "PT"]
ignore = ["F821"]
include = ["link/*.py", "tests/*.py"]

[tool.ruff.per-file-ignores]
"tests/*.py" = ["D", "PL"]
"stubs/*.pyi" = ["D"]

[tool.ruff.pydocstyle]
convention = "pep257"