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PR #2394 added functionality to eliminate decoy peptides that are identical to target peptides. However, this only works for single-protease searches. If there are multiple proteases, then it is possible to have identical target and decoy peptides again.
Possible solves for this issue:
Move protein db loading to the SearchTask
consider all possible proteases in the MetaMorpheusTask
Decoy on the fly
The text was updated successfully, but these errors were encountered:
PR #2394 added functionality to eliminate decoy peptides that are identical to target peptides. However, this only works for single-protease searches. If there are multiple proteases, then it is possible to have identical target and decoy peptides again.
Possible solves for this issue:
The text was updated successfully, but these errors were encountered: