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alma.py
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import wx
from Panels import Start, AnalyzeStride, AnalyzeFootfall, RandomForest, PCA
class HomeFrame(wx.Frame):
def __init__(self, *args, **kw):
super(HomeFrame, self).__init__(*args, **kw)
self.StartPanel = Start.StartPanel(self)
self.StartPanel.Hide()
self.AnalyzeFootfallPanel = AnalyzeFootfall.AnalyzeFootfallPanel(self)
self.AnalyzeFootfallPanel.Hide()
self.AnalyzeStridePanel = AnalyzeStride.AnalyzeStridePanel(self)
self.AnalyzeStridePanel.Hide()
self.RandomForestPanel = RandomForest.RandomForestPanel(self)
self.RandomForestPanel.Hide()
self.PCAPanel = PCA.PCAPanel(self)
self.PCAPanel.Hide()
self.current_panel = self.StartPanel
self.main_sizer = wx.GridBagSizer(0, 0)
self.main_sizer.SetEmptyCellSize((0, 0))
self.main_sizer.Add(self.current_panel, pos=(0, 0), span = (5, 5), flag=wx.EXPAND)
self.SetSizer(self.main_sizer)
self.makeMenuBar()
self.CreateStatusBar()
self.SetStatusText("Welcome!")
self.current_panel.Show()
self.Layout()
def makeMenuBar(self):
"""
more functions / menu items can be added
for additional features
"""
limb_motion_menu = wx.Menu()
start_item = limb_motion_menu.Append(-1, "&Start \tCtrl-S")
analyze_footfall_item = limb_motion_menu.Append(-1, "&Footfall detection\tCtrl-L",
"Detect footfalls and validate results")
analyze_stride_item = limb_motion_menu.Append(-1, "&Gait kinematic data extraction\tCtrl-K",
"Extract gait kinematic parameters with bodypart coordinate data")
#################################
analysis_menu = wx.Menu()
random_forest_item = analysis_menu.Append(-1, "&Random forest classification\tCtrl-R",
"Random forest classification using extracted gait kinematic parameters")
principal_component_analysis_item = analysis_menu.Append(-1, "&PCA\tCtrl-P",
"PCA using extracted gait kinematic parameters")
#################################
help_menu = wx.Menu()
about_item = help_menu.Append(wx.ID_ABOUT)
help_item = help_menu.Append(wx.ID_HELP)
#################################
menu_bar = wx.MenuBar()
menu_bar.Append(limb_motion_menu, "&Limb motion analysis")
menu_bar.Append(analysis_menu, "&Data analysis")
menu_bar.Append(help_menu, "&Help")
self.SetMenuBar(menu_bar)
#################################
self.Bind(wx.EVT_MENU, self.on_start, start_item)
self.Bind(wx.EVT_MENU, self.on_analyze_footfall, analyze_footfall_item)
self.Bind(wx.EVT_MENU, self.on_analyze_stride, analyze_stride_item)
self.Bind(wx.EVT_MENU, self.on_random_forest, random_forest_item)
self.Bind(wx.EVT_MENU, self.on_PCA, principal_component_analysis_item)
self.Bind(wx.EVT_MENU, self.on_about, about_item)
self.Bind(wx.EVT_MENU, self.on_help, help_item)
def on_start(self, e):
self.current_panel.Hide()
self.main_sizer.Replace(self.current_panel, self.StartPanel)
self.SetSizer(self.main_sizer)
self.current_panel = self.StartPanel
self.current_panel.Show()
self.SetStatusText('Welcome!')
self.Layout()
self.Refresh()
def on_quit(self, e):
self.Close(True)
def on_analyze_footfall(self, e):
self.current_panel.Hide()
self.main_sizer.Replace(self.current_panel, self.AnalyzeFootfallPanel)
self.SetSizer(self.main_sizer)
self.current_panel = self.AnalyzeFootfallPanel
self.current_panel.Show()
self.SetStatusText('Ready for automated footfall analysis')
self.Layout()
self.Refresh() # refresh to show slider in right proportion
def on_analyze_stride(self, e):
self.current_panel.Hide()
self.main_sizer.Replace(self.current_panel, self.AnalyzeStridePanel)
self.SetSizer(self.main_sizer)
self.current_panel = self.AnalyzeStridePanel
self.current_panel.Show()
self.SetStatusText('Ready for automated kinematic analysis')
self.Layout()
self.Refresh()
def on_random_forest(self, e):
self.current_panel.Hide()
self.main_sizer.Replace(self.current_panel, self.RandomForestPanel)
self.SetSizer(self.main_sizer)
self.current_panel = self.RandomForestPanel
self.current_panel.Show()
self.SetStatusText('Run random forest classification on extracted gait kinematic parameters')
self.Layout()
self.Refresh() # refresh to show slider in right proportion
def on_PCA(self, e):
self.current_panel.Hide()
self.main_sizer.Replace(self.current_panel, self.PCAPanel)
self.SetSizer(self.main_sizer)
self.current_panel = self.PCAPanel
self.current_panel.Show()
self.SetStatusText('Run PCA on extracted gait kinematic parameters')
self.Layout()
self.Refresh() # refresh to show slider in right proportion
def on_about(self, e):
wx.MessageBox( "This is a toolbox for fully automated (rodent) "\
"limb motion analysis with markerless bodypart tracking data. "\
"Compatible with csv output from DeepLabCut.",
"About ALMA",
wx.OK|wx.ICON_INFORMATION)
def on_help(self, event):
wx.MessageBox("Please go to our GitHub Wiki for help or email us :)",
"Support",
wx.OK|wx.ICON_INFORMATION)
if __name__ == '__main__':
from Functions import ConfigFunctions
configs = ConfigFunctions.load_config('./config.yaml')
window_width, window_height = configs['window_width'], configs['window_height']
app = wx.App(redirect = True)
home_frame = HomeFrame(None, title='ALMA - Automated Limb Motion Analysis', size=(window_width, window_height))
home_frame.Show()
app.MainLoop()