From 14e59aa6abc29b1b0ab0fe55937e0f93dc87b908 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marie=20Joss=C3=A9?= <84919248+Marie59@users.noreply.github.com> Date: Mon, 26 Aug 2024 13:49:40 +0200 Subject: [PATCH 1/3] add enabling rocrate locally --- .../tutorials/ro-crate-in-galaxy/tutorial.md | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md b/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md index f45a8a61b26786..b7b482b43e7d4c 100644 --- a/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md +++ b/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md @@ -53,6 +53,26 @@ This tutorial will guide you through the steps of defining such a report for you This tutorial will show you how to generate Galaxy-based [Workflow Run RO-Crate](https://w3id.org/ro/crate/) after running the workflow. +{% include _includes/cyoa-choices.html option1="Locally" option2="Not_locally" default="Not_locally" + text="Are you running Galaxy locally ?" %} + +
+ +## Enable RO-Crate on your local instance +> Update your galaxy configuration +> - Go to where your galaxy folder is in your computer +> - In galaxy -> config you will find a file galaxy.yml open it +> - under the galaxy section add `enable_celery_tasks: true` your file should at least be like that (of course you can other configuration lines under galaxy) : +> ``` +> galaxy: +> enable_celery_tasks: true +> ``` +> That's it ! Now you can launch your local instance as usual. +{: .hands_on} +
+ +
+
## Import an example workflow From 2e39d171e9225692062d051837b04a4f0ede35e9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marie=20Joss=C3=A9?= <84919248+Marie59@users.noreply.github.com> Date: Mon, 26 Aug 2024 18:08:23 +0200 Subject: [PATCH 2/3] Update topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Björn Grüning --- topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md b/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md index b7b482b43e7d4c..43eb1a494fa15b 100644 --- a/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md +++ b/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md @@ -62,7 +62,7 @@ This tutorial will show you how to generate Galaxy-based [Workflow Run RO-Crate] > Update your galaxy configuration > - Go to where your galaxy folder is in your computer > - In galaxy -> config you will find a file galaxy.yml open it -> - under the galaxy section add `enable_celery_tasks: true` your file should at least be like that (of course you can other configuration lines under galaxy) : +> - make sure the option `enable_celery_tasks` is set to `true`: > ``` > galaxy: > enable_celery_tasks: true From f03e7c75527cd47fb7de902726e015eb92ca8eb2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Marie=20Joss=C3=A9?= <84919248+Marie59@users.noreply.github.com> Date: Mon, 26 Aug 2024 18:08:45 +0200 Subject: [PATCH 3/3] Update topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Björn Grüning --- topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md b/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md index 43eb1a494fa15b..16b607d9a41ef6 100644 --- a/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md +++ b/topics/fair/tutorials/ro-crate-in-galaxy/tutorial.md @@ -60,8 +60,9 @@ This tutorial will show you how to generate Galaxy-based [Workflow Run RO-Crate] ## Enable RO-Crate on your local instance > Update your galaxy configuration -> - Go to where your galaxy folder is in your computer -> - In galaxy -> config you will find a file galaxy.yml open it +> - Go to where your Galaxy folder is in your computer +> - In your root Galaxy folder navigate to the `config` folder where a the `galaxy.yml` should be located. Please open it. +> - (In case you only find a `galaxy.yml.sample` file, copy this one and name it `galaxy.yml`) > - make sure the option `enable_celery_tasks` is set to `true`: > ``` > galaxy: