Dockerfile

FROM python:3.8

# Install nicer Bash terminal
RUN git clone --depth=1 https://github.com/Bash-it/bash-it.git ~/.bash_it && \
  bash ~/.bash_it/install.sh --silent

# Install NodeJS 12
RUN curl -sL https://deb.nodesource.com/setup_12.x | bash - && \
  apt-get upgrade -y && \
  apt-get install -y nodejs texlive-latex-extra texlive-xetex && \
  rm -rf /var/lib/apt/lists/*

# Install Java
RUN apt-get update -y && \
    apt-get install default-jdk -y

# Install packages and extensions for JupyterLab
RUN pip install --upgrade pip && \
  pip install --upgrade \
    jupyterlab>=2.0.0 \
    ipywidgets \
    jupyter-lsp \
    python-language-server \
    jupyterlab-git && \
  jupyter labextension install \
    @jupyter-widgets/jupyterlab-manager \
    @jupyterlab/latex \
    jupyterlab-drawio \ 
    jupyterlab-plotly \
    @bokeh/jupyter_bokeh \
    @krassowski/jupyterlab-lsp \
    @jupyterlab/git \
    jupyterlab-spreadsheet 

# Install SPARQL kernel
RUN pip install sparqlkernel
RUN jupyter sparqlkernel install 

# Install IJava kernel
RUN curl -L https://github.com/SpencerPark/IJava/releases/download/v1.3.0/ijava-1.3.0.zip > ijava-kernel.zip
RUN unzip ijava-kernel.zip -d ijava-kernel \
  && cd ijava-kernel \
  && python3 install.py --sys-prefix

# Install jupyter RISE extension (for IJava)
RUN pip install jupyter_contrib-nbextensions RISE \
  && jupyter-nbextension install rise --py --system \
  && jupyter-nbextension enable rise --py --system \
  && jupyter contrib nbextension install --system \
  && jupyter nbextension enable hide_input/main
RUN rm ijava-kernel.zip
RUN rm -rf ijava-kernel

RUN jupyter lab build 

COPY bin/entrypoint.sh /usr/local/bin/
COPY config/jupyter_notebook_config.py /root/.jupyter/
# COPY config/ /root/.jupyter/


EXPOSE 8888
VOLUME /notebooks
WORKDIR /notebooks
ENTRYPOINT ["entrypoint.sh"]



## Old pip install for data science:

    # jedi==0.15.2 \ 
    # # jupyterlab-lsp does not support 0.17
    # jupyterlab_latex \
    # plotly \
    # bokeh \
    # numpy \
    # scipy \
    # numexpr \
    # patsy \
    # scikit-learn \
    # scikit-image \
    # matplotlib \
    # ipython \
    # pandas \
    # sympy \
    # seaborn \
    # nose \