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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 7 3

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 6

  5. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  6. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

Repositories

Showing 10 of 313 repositories
  • aind-software-docs Public

    Centralized documentation repository for Scientific Computing, publishes to RTD

    AllenNeuralDynamics/aind-software-docs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 12, 2025
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 25 1 Updated Jan 12, 2025
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 17 1 Updated Jan 11, 2025
  • TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    AllenNeuralDynamics/TigerASI’s past year of commit activity
    Python 5 MIT 2 12 1 Updated Jan 11, 2025
  • Aind.Behavior.ExperimentLauncher Public

    Source for for a minimal framework that can be used to build experimental interfaces

    AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity
    Python 0 MIT 0 11 (1 issue needs help) 2 Updated Jan 11, 2025
  • foraging-behavior-browser Public

    Foraging behavior browser (streamlit)

    AllenNeuralDynamics/foraging-behavior-browser’s past year of commit activity
    Python 2 MIT 2 14 0 Updated Jan 11, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 118 (1 issue needs help) 8 Updated Jan 11, 2025
  • AllenNeuralDynamics/aind-multiplane-ophys-pipeline’s past year of commit activity
    Nextflow 0 MIT 0 2 0 Updated Jan 11, 2025
  • aind-qc-portal Public

    Quality control portal

    AllenNeuralDynamics/aind-qc-portal’s past year of commit activity
    Python 0 MIT 0 13 0 Updated Jan 10, 2025
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 23 MIT 17 51 9 Updated Jan 10, 2025

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