FIX minor issues fall21 (#236)

* CHG rename admin registry token name

* CHG tune api startup probe

* FIX -lgcc issue on xv6 ide

* FIX build issue with latest theia

* FIX rename pipeline url in template

api/anubis/utils/k8s/theia.py

@@ -150,7 +150,7 @@ def create_theia_k8s_pod_pvc(theia_session: TheiaSession) -> Tuple[client.V1Pod,
             name='docker-config',
             secret=client.V1SecretVolumeSource(
                 default_mode=0o644,
-                secret_name="anubis",
+                secret_name="anubis-registry",
                 items=[
                     client.V1KeyToPath(
                         key=".dockerconfigjson",

k8s/chart/templates/api.yml

@@ -105,7 +105,7 @@ spec:
           httpGet:
             path: /
             port: 5000
-          initialDelaySeconds: 1
+          initialDelaySeconds: 3
           periodSeconds: 1
           failureThreshold: 60
         livenessProbe:

theia/ide/admin/Dockerfile

@@ -113,7 +113,7 @@ RUN adduser --disabled-password --gecos '' --uid 1001 anubis; \
   && rm -rf /var/cache/apt/* \
   && rm -rf /var/lib/apt/lists/*; \
   find / -depth \
-    \( -name .cache -o -name __pycache__ -o -name *.pyc -o -name *.a -o -name .git -o -name .github \) \
+    \( -name .cache -o -name __pycache__ -o -name '*.pyc' -o -name .git -o -name .github \) \
     -exec 'rm' '-rf' '{}' '+'
 
 COPY cli /cli

theia/ide/admin/cli/anubis/assignment/pipeline.py

@@ -27,7 +27,7 @@ def post(path: str, data: dict, params=None):
     # Attempt to contact the pipeline API
     try:
         res = requests.post(
-            'http://pipeline-api:5000' + path,
+            'http://anubis-pipeline-api:5000' + path,
             headers=headers,
             params=params,
             json=data,

theia/ide/admin/latest.package.json

@@ -51,6 +51,8 @@
         "vscode-builtin-theme-defaults": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/theme-defaults-1.39.1-prel.vsix",
         "vscode-builtin-yaml": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/yaml-1.39.1-prel.vsix",
         "vscode-editorconfig": "https://github.com/theia-ide/editorconfig-vscode/releases/download/v0.14.4/EditorConfig-0.14.4.vsix",
-        "vscode-python": "https://github.com/microsoft/vscode-python/releases/download/2020.1.58038/ms-python-release.vsix"
+        "vscode-python": "https://github.com/microsoft/vscode-python/releases/download/2020.1.58038/ms-python-release.vsix",
+        "vscode-builtin-theme-defaults": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/theme-defaults-1.39.1-prel.vsix"
+
     }
 }

theia/ide/devops/Dockerfile

@@ -117,13 +117,13 @@ RUN set -eux; apt-get update; \
   rm -rf /var/cache/apt/*; \
   rm -rf /var/lib/apt/lists/*; \
   find / -depth \
-    \( -name .cache -o -name __pycache__ -o -name *.pyc -o -name *.a -o -name .git -o -name .github \) \
+    \( -name .cache -o -name __pycache__ -o -name '*.pyc' -o -name .git -o -name .github \) \
     -exec 'rm' '-rf' '{}' '+'; \
   rm -rf /home/node; \
   find /usr/local -depth \
   \( \
   \( -type d -a \( -name test -o -name tests -o -name idle_test -o -name __pycache__ \) \) \
-  -o \( -type f -a \( -name '*.pyc' -o -name '*.pyo' -o -name '*.a' \) \) \
+  -o \( -type f -a \( -name '*.pyc' -o -name '*.pyo' \) \) \
   \) -exec 'rm' '-rf' '{}' '+'
 
 COPY motd.txt /etc/motd

theia/ide/devops/latest.package.json

@@ -62,6 +62,7 @@
     "vscode-builtin-xml": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/xml-1.39.1-prel.vsix",
     "vscode-builtin-yaml": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/yaml-1.39.1-prel.vsix",
     "vscode-editorconfig": "https://github.com/theia-ide/editorconfig-vscode/releases/download/v0.14.4/EditorConfig-0.14.4.vsix",
-    "vscode-python": "https://open-vsx.org/api/ms-python/python/2020.8.105369/file/ms-python.python-2020.8.105369.vsix"
+    "vscode-python": "https://open-vsx.org/api/ms-python/python/2020.8.105369/file/ms-python.python-2020.8.105369.vsix",
+    "vscode-builtin-theme-defaults": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/theme-defaults-1.39.1-prel.vsix",
   }
 }

theia/ide/xv6/Dockerfile

@@ -1,6 +1,6 @@
 # https://github.com/theia-ide/theia-apps/tree/master/theia-cpp-docker
 
-ARG NODE_VERSION=12.18.3
+ARG NODE_VERSION=12.22.6
 
 FROM node:${NODE_VERSION}-buster as theia
 
@@ -21,14 +21,14 @@ RUN set -ex; \
   apt-get install -y --no-install-recommends \
     wget gpg apt-transport-https ca-certificates apt-utils; \
   wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | apt-key add -; \
-  echo "deb http://apt.llvm.org/buster/ llvm-toolchain-buster-12 main" \
+  echo "deb http://apt.llvm.org/buster/ llvm-toolchain-buster main" \
     > /etc/apt/sources.list.d/llvm.list; \
   apt-get update; \
     apt-get install -y --no-install-recommends \
     zsh gdb git build-essential cmake \
-    gcc-multilib g++-multilib \
+    gcc-multilib g++-multilib libc6-dev \
     python3 python3-pip \
-    clangd-12 \
+    clangd \
     qemu-system-i386 \
     libsecret-1-0; \
   yarn --pure-lockfile; \
@@ -46,7 +46,6 @@ RUN set -ex; \
   cd /home/anubis; \
   cp /etc/skel/.bash_logout /etc/skel/.bashrc /etc/skel/.profile /home/anubis/; \
   pip3 install --no-cache-dir supervisor; \
-  ln -s /usr/bin/clangd-12 /usr/bin/clangd; \
   echo 'cat /etc/motd' >> /etc/skel/.bashrc; \
   echo 'set auto-load safe-path /' > /etc/skel/.gdbinit; \
   echo 'source /opt/pwndbg/gdbinit.py' >> /etc/skel/.gdbinit; \
@@ -56,14 +55,13 @@ RUN set -ex; \
   cd /home/anubis; \
   chmod g+rw /home; \
   chown -R anubis:anubis /home/anubis; \
-  apt-get purge -y --auto-remove -o APT::AutoRemove::RecommendsImportant=false; \
+  apt reinstall libc6-dev libgcc-8-dev libgcc1 gcc-8 -y; \
   rm -rf /tmp/*; \
   rm -rf /usr/share/doc; \
-  rm -rf /var/cache/apt/*; \
   rm -rf /var/lib/apt/lists/*; \
   rm -rf /home/node/*; \
   find / -depth \
-    \( -name .cache -o -name __pycache__ -o -name '*.pyc' -o -name '*.a' -o -name .git -o -name .github \) \
+    \( -name .cache -o -name __pycache__ -o -name '*.pyc' -o -name .git -o -name .github \) \
     -exec 'rm' '-rf' '{}' '+';
 
 COPY supervisord.conf autosave-dump.sh /

theia/ide/xv6/latest.package.json

@@ -17,20 +17,14 @@
     "@theia/callhierarchy": "latest",
     "@theia/console": "latest",
     "@theia/core": "latest",
-    "@theia/cpp-debug": "latest",
     "@theia/debug": "latest",
-    "@theia/editor": "latest",
     "@theia/editor-preview": "latest",
     "@theia/file-search": "latest",
-    "@theia/filesystem": "latest",
     "@theia/getting-started": "latest",
     "@theia/git": "latest",
-    "@theia/keymaps": "latest",
     "@theia/markers": "latest",
     "@theia/messages": "latest",
-    "@theia/metrics": "latest",
     "@theia/mini-browser": "latest",
-    "@theia/monaco": "latest",
     "@theia/navigator": "latest",
     "@theia/outline-view": "latest",
     "@theia/output": "latest",
@@ -39,13 +33,9 @@
     "@theia/plugin-ext-vscode": "latest",
     "@theia/preferences": "latest",
     "@theia/preview": "latest",
-    "@theia/process": "latest",
-    "@theia/scm": "latest",
     "@theia/search-in-workspace": "latest",
-    "@theia/task": "latest",
     "@theia/terminal": "latest",
     "@theia/typehierarchy": "latest",
-    "@theia/userstorage": "latest",
     "@theia/variable-resolver": "latest",
     "@theia/vsx-registry": "latest",
     "@theia/workspace": "latest"
@@ -70,6 +60,7 @@
     "vscode-builtin-yaml": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/yaml-1.39.1-prel.vsix",
     "vscode-clangd": "https://open-vsx.org/api/llvm-vs-code-extensions/vscode-clangd/0.1.7/file/llvm-vs-code-extensions.vscode-clangd-0.1.7.vsix",
     "vscode-editorconfig": "https://github.com/theia-ide/editorconfig-vscode/releases/download/v0.14.4/EditorConfig-0.14.4.vsix",
+    "vscode-builtin-theme-defaults": "https://github.com/theia-ide/vscode-builtin-extensions/releases/download/v1.39.1-prel/theme-defaults-1.39.1-prel.vsix",
     "plantuml": "https://open-vsx.org/api/jebbs/plantuml/2.14.0/file/jebbs.plantuml-2.14.0.vsix",
     "webfreak-debug": "https://open-vsx.org/api/webfreak/debug/0.25.0/file/webfreak.debug-0.25.0.vsix"
   }