v3.0.0 Anubis LMS (#84)

* CHG course aware admin utilities * ADD professor and TA management components * ADD basic permission and crash checks * CHG rename pytest.sh * CHG lint * ADD TODO on all places in api that need docs * CHG document a huge amount of the api * FIX debug message target * CHG move nav items into Components subfolder * CHG set the DH_HOST for testing data seed * CHG significantly reduce course context checks * FIX spacing issue in design doc and add management ide auth notes * CHG more graceful course context checks in the frontend * FIX theia admin network policy * CHG simplify theia proxy LRU cache * CHG more clear error message on course action permission * FIX remove is_admin check from public submission * FIX remove is_admin check from auth user create * CHG increment version on about page
AnubisLMS · May 3, 2021 · d0c284e · d0c284e
1 parent 1c2e1d1
commit d0c284e
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Showing 135 changed files with 4,023 additions and 1,452 deletions.
diff --git a/.gitmodules b/.gitmodules
diff --git a/Makefile b/Makefile
@@ -17,11 +17,6 @@ BUILT_IMAGES := $(shell \
 	2> /dev/null \
 )
 RUNNING_CONTAINERS := $(shell docker-compose ps -q)
-API_IP := $(shell docker network inspect anubis_default | \
-	jq '.[0].Containers | .[] | select(.Name == "anubis_api_1") | .IPv4Address' -r | \
-	awk '{print substr($$0, 1, index($$0, "/")-1)}' \
-	2> /dev/null \
-)
 VOLUMES := $(shell docker volume ls | awk '{if (match($$2, /^anubis_.*$$/)) {print $$2}}')
 
 
@@ -45,6 +40,14 @@ push:
 	docker-compose build --parallel --pull $(PUSH_SERVICES)
 	docker-compose push $(PUSH_SERVICES)
 
+startup-links:
+	@echo ''
+	@echo 'seed: http://localhost/api/admin/seed/'
+	@echo 'auth: http://localhost/api/admin/auth/token/superuser'
+	@echo 'auth: http://localhost/api/admin/auth/token/ta'
+	@echo 'auth: http://localhost/api/admin/auth/token/professor'
+	@echo 'site: http://localhost/'
+
 .PHONY: debug        # Start the cluster in debug mode
 debug:
 	docker-compose up -d $(PERSISTENT_SERVICES)
@@ -55,10 +58,7 @@ debug:
 	sleep 3
 	@echo 'running migrations'
 	make -C api migrations
-	@echo ''
-	@echo 'seed: http://localhost/api/admin/seed/'
-	@echo 'auth: http://localhost/api/admin/auth/token/jmc1283'
-	@echo 'site: http://localhost/'
+	make startup-links
 
 .PHONY: mindebug     # Start the minimal cluster in debug mode
 mindebug:
@@ -70,26 +70,17 @@ mindebug:
 	sleep 3
 	@echo 'running migrations'
 	make -C api migrations
-	@echo ''
-	@echo 'seed: http://localhost/api/admin/seed/'
-	@echo 'auth: http://localhost/api/admin/auth/token/jmc1283'
-	@echo 'site: http://localhost/'
+	make startup-links
 
 .PHONY: mkdebug      # Start minikube debug
 mkdebug:
 	./k8s/debug/provision.sh
-	@echo ''
-	@echo 'seed: http://localhost/api/admin/seed/'
-	@echo 'auth: http://localhost/api/admin/auth/token/jmc1283'
-	@echo 'site: http://localhost/'
+	make startup-links
 
 .PHONY: mkrestart    # Restart minikube debug
 mkrestart:
 	./k8s/debug/restart.sh
-	@echo ''
-	@echo 'seed: http://localhost/api/admin/seed/'
-	@echo 'auth: http://localhost/api/admin/auth/token/jmc1283'
-	@echo 'site: http://localhost/'
+	make startup-links
 
 yeetdb:
 	docker-compose kill db

diff --git a/api/Makefile b/api/Makefile
@@ -10,7 +10,8 @@ all: venv
 
 venv:
 	virtualenv -p `which python3` venv
-	./venv/bin/pip install -r ./requirements.txt -r ./requirements-dev.txt
+	./venv/bin/pip install -r ./requirements.txt
+	./venv/bin/pip install -U black pytest
 
 debug:
 	make -C .. debug
@@ -25,10 +26,8 @@ cleanyeetdb:
 migrations: venv
 	./venv/bin/alembic upgrade head
 
-.PHONY: lint             # Run autopep8 then black on lint directories
+.PHONY: lint             # Run black on lint directories
 lint: venv
-	@echo 'autopep to check and fix un-python things'
-	./venv/bin/autopep8 --in-place --aggressive --aggressive $(LINT_FILES)
 	@echo 'black to stylize'
 	./venv/bin/black $(LINT_FILES)
 

diff --git a/api/anubis/app.py b/api/anubis/app.py
@@ -79,7 +79,7 @@ def create_pipeline_app():
     # Initialize app with all the extra services
     init_services(app)
 
-    # register blueprints
+    # register views
     register_pipeline_views(app)
 
     return app
diff --git a/api/anubis/config.py b/api/anubis/config.py
@@ -4,71 +4,47 @@
 
 
 class Config:
-    SECRET_KEY = None
-    STATS_REAP_DURATION = timedelta(days=60)
-
-    # sqlalchemy
-    SQLALCHEMY_DATABASE_URI = None
-    SQLALCHEMY_POOL_PRE_PING = True
-    SQLALCHEMY_POOL_SIZE = 100
-    SQLALCHEMY_POOL_RECYCLE = 280
-    SQLALCHEMY_TRACK_MODIFICATIONS = False
-
-    # OAuth
-    OAUTH_CONSUMER_KEY = ""
-    OAUTH_CONSUMER_SECRET = ""
-
-    # Cache config
-    CACHE_REDIS_HOST = "redis-master"
-    CACHE_REDIS_PASSWORD = os.environ.get("REDIS_PASSWORD", default="anubis")
-
-    # Logger config
-    LOGGER_NAME = os.environ.get("LOGGER_NAME", default="anubis-api")
-
-    # Theia config
-    THEIA_DOMAIN = ""
-    THEIA_TIMEOUT = timedelta(hours=6)
 
     def __init__(self):
+        # General flask config
         self.DEBUG = os.environ.get("DEBUG", default="0") == "1"
-
         self.SECRET_KEY = os.environ.get("SECRET_KEY", default="DEBUG")
 
+        # sqlalchemy
+        self.SQLALCHEMY_DATABASE_URI = None
+        self.SQLALCHEMY_POOL_PRE_PING = True
+        self.SQLALCHEMY_POOL_SIZE = 100
+        self.SQLALCHEMY_POOL_RECYCLE = 280
+        self.SQLALCHEMY_TRACK_MODIFICATIONS = False
         self.SQLALCHEMY_DATABASE_URI = os.environ.get(
             "DATABASE_URI",
             default="mysql+pymysql://anubis:anubis@{}/anubis".format(
                 os.environ.get("DB_HOST", "db")
             ),
         )
+
+        # Elasticsearch
         self.DISABLE_ELK = os.environ.get("DISABLE_ELK", default="0") == "1"
 
         # OAuth
         self.OAUTH_CONSUMER_KEY = os.environ.get("OAUTH_CONSUMER_KEY", default="DEBUG")
-        self.OAUTH_CONSUMER_SECRET = os.environ.get(
-            "OAUTH_CONSUMER_SECRET", default="DEBUG"
-        )
+        self.OAUTH_CONSUMER_SECRET = os.environ.get("OAUTH_CONSUMER_SECRET", default="DEBUG")
 
         # Redis
-        self.CACHE_REDIS_HOST = os.environ.get(
-            "CACHE_REDIS_HOST", default="redis-master"
-        )
-
-        self.CACHE_REDIS_PASSWORD = os.environ.get(
-            "REDIS_PASS", default="anubis"
-        )
+        self.CACHE_REDIS_HOST = os.environ.get("CACHE_REDIS_HOST", default="redis-master")
+        self.CACHE_REDIS_PASSWORD = os.environ.get("REDIS_PASS", default="anubis")
 
         # Logger
         self.LOGGER_NAME = os.environ.get("LOGGER_NAME", default="anubis-api")
 
         # Theia
-        self.THEIA_DOMAIN = os.environ.get(
-            "THEIA_DOMAIN", default="ide.anubis.osiris.services"
-        )
+        self.THEIA_DOMAIN = os.environ.get("THEIA_DOMAIN", default="ide.anubis.osiris.services")
         self.THEIA_TIMEOUT = timedelta(hours=6)
 
-        logging.info(
-            "Starting with DATABASE_URI: {}".format(self.SQLALCHEMY_DATABASE_URI)
-        )
+        # autograding specific config
+        self.STATS_REAP_DURATION = timedelta(days=60)
+
+        logging.info("Starting with DATABASE_URI: {}".format(self.SQLALCHEMY_DATABASE_URI))
         logging.info("Starting with SECRET_KEY: {}".format(self.SECRET_KEY))
         logging.info("Starting with DEBUG: {}".format(self.DEBUG))