update get_network

ArnovanHilten · Oct 17, 2023 · 3e22a71 · 3e22a71
1 parent 2412232
commit 3e22a71
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Showing 13 changed files with 798 additions and 76 deletions.
diff --git a/GenNet_utils/Interpret_network.py b/GenNet_utils/Interpret_network.py
@@ -0,0 +1,15 @@
+import sys
+import os
+sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
+
+
+from interpretation.weight_importance import make_importance_values_input
+from interpretation.NID import Get_weight_tsang, GenNet_pairwise_interactions_topn
+from interpretation.RLIPP import calculate_RLIPP
+
+from GenNet_utils.Utility_functions import get_SLURM_id, evaluate_performance
+from GenNet_utils.Train_network import get_classification_network, get_regression_network
+
+def get_network(args):
+
+    if args.regression = True
diff --git a/GenNet_utils/Train_network.py b/GenNet_utils/Train_network.py
diff --git a/epistatis/DFIM.py → interpretation/DFIM.py b/epistatis/DFIM.py → interpretation/DFIM.py
diff --git a/epistatis/DFIM2.py → interpretation/DFIM2.py b/epistatis/DFIM2.py → interpretation/DFIM2.py
diff --git a/epistatis/Epistasis_AUC.py → interpretation/Epistasis_AUC.py b/epistatis/Epistasis_AUC.py → interpretation/Epistasis_AUC.py
diff --git a/epistatis/NID.py → interpretation/NID.py b/epistatis/NID.py → interpretation/NID.py
diff --git a/epistatis/RLIPP.py → interpretation/RLIPP.py b/epistatis/RLIPP.py → interpretation/RLIPP.py
diff --git a/epistatis/RLIPP2.py → interpretation/RLIPP2.py b/epistatis/RLIPP2.py → interpretation/RLIPP2.py
diff --git a/epistatis/RLIPP_novel_v2.py → interpretation/RLIPP_novel_v2.py b/epistatis/RLIPP_novel_v2.py → interpretation/RLIPP_novel_v2.py
diff --git a/epistatis/__init__.py → interpretation/__init__.py b/epistatis/__init__.py → interpretation/__init__.py
diff --git a/epistatis/weight_importance.py → interpretation/weight_importance.py b/epistatis/weight_importance.py → interpretation/weight_importance.py