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CHANGELOG.md

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0.4.0 - 12/26/2025

  • Public release

0.3.0 - 07/07/2024

  • Added a notebook for plotting expanded DockGen benchmark results
  • Added support for scoring relaxed-protein predictions
  • Fixed runtime error for relaxed-protein energy minimization
  • Fixed runtime error for compute benchmarking RoseTTAFold-All-Atom predictions

0.2.0 - 07/04/2024

  • Added P2Rank as a new binding site prediction method available to use with AutoDock-Vina
  • Added OpenJDK to the MULTICOM_ligand Conda environment to enable P2Rank inference
  • Added a script to benchmark the required compute resources for each baseline method
  • Updated citation
  • Corrected directory navigation instructions (i.e., cd references) in README.md to reflect the directory structure of each Zenodo archive file
  • Corrected Biopython, NumPy, and ProDy versions in the DiffDock Conda environment to avoid GCC compilation errors

0.1.0 - 06/08/2024

  • First release