fix: updgrade container with PYTHONPATH set to conda lib

CCBR · Oct 16, 2024 · 9715cb0 · 9715cb0
1 parent 1ec96de
commit 9715cb0
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/config/biowulf/config.yaml b/config/biowulf/config.yaml
@@ -4,7 +4,7 @@
 workdir: "WORKDIR"
 
 # temporary directory for intermediate files that are not saved
-tempdir: '/lscratch/$SLURM_JOB_ID'
+tempdir: "/lscratch/$SLURM_JOB_ID"
 
 # tab delimited samples file ... should have the following 3 columns
 # sampleName	path_to_R1_fastq	path_to_R2_fastq
@@ -128,4 +128,4 @@ containers:
   picard: "docker://nciccbr/ccbr_picard_2.27.5:v1"
   R: "docker://nciccbr/ccbr_r_4.3.0:v1"
   star: "docker://nciccbr/ccbr_star_2.7.6a:latest"
-  star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.0"
+  star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.1"
diff --git a/config/fnlcr/config.yaml b/config/fnlcr/config.yaml
@@ -128,4 +128,4 @@ containers:
   picard: "docker://nciccbr/ccbr_picard_2.27.5:v1"
   R: "docker://nciccbr/ccbr_r_4.3.0:v1"
   star: "docker://nciccbr/ccbr_star_2.7.6a:latest"
-  star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.0"
+  star_ucsc_cufflinks: "docker://nciccbr/charlie_star_ucsc_cufflinks:v0.4.1"