chore: snakemake must already be in user path for eddie

CCBR · Dec 27, 2024 · ac602af · ac602af
1 parent b05f54b
commit ac602af
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/charlie b/charlie
@@ -626,7 +626,8 @@ function main(){
   elif [ "$PLATFORM" == "eddie" ]; then
     # TODO fill in other variables for eddie
     CLUSTER_PROFILE="config/eddie"
-    MODULE_LOAD="module load python/$PYTHONVERSION snakemake/$SNAKEMAKEVERSION singularity"
+    MODULE_LOAD="module load python/3.8 singularity"
+    # snakemake is already in Taka's path in his bashrc
     TEMP_DIR="/exports/eddie/scratch/$USER"
   else
     CLUSTER_PROFILE="config/unknown"