fix: do not read entire files in memory

CCBR · Oct 24, 2024 · fb1cc06 · fb1cc06
1 parent d8f9cf0
commit fb1cc06
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/workflow/rules/init.smk b/workflow/rules/init.smk
@@ -53,9 +53,8 @@ def append_files_in_list(flist, ofile):
         with open(ofile, "w") as outfile:
             for fname in flist:
                 with open(fname) as infile:
-                    l = infile.read()
-                    l = l.strip()
-                    outfile.write("%s\n" % (l))
+                    for line in infile:
+                        outfile.write(line)
     return True