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chore: syncup
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kopardev committed Apr 24, 2024
2 parents 720297a + 4c8ed68 commit 8b0bdad
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2 changes: 2 additions & 0 deletions .github/workflows/docs.yml
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7 changes: 5 additions & 2 deletions README.md
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**Park** an **arc**hived project tool**kit**!

[![test](https://github.com/CCBR/parkit/actions/workflows/test.yml/badge.svg)](https://github.com/CCBR/parkit/actions/workflows/test.yml)
[![docs](https://github.com/CCBR/parkit/actions/workflows/docs.yml/badge.svg)](https://github.com/CCBR/parkit/actions/workflows/docs.yml)

> DISCLAIMERS:
>
> - works only on [BIOWULF](https://hpc.nih.gov/) or HELIX
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%> conda activate parkit
```

If not on helix or biowulf then you will have to **clone** the repo and **pip install** it.

- [HPC_DME_APIs](https://github.com/CBIIT/HPC_DME_APIs) package needs to be cloned and set up correctly. Run `dm_generate_token` to successfully generate a token prior to running `parkit`.

- **HPC_DM_UTILS** environmental variable should be preset before calling `parkit`. It also needs to be passed as an argument to `parkit_folder2hpcdme` and `parkit_tarball2hpcdme` end-to-end workflows.

> If not on helix or biowulf then you will have to **clone** the repo and **pip install** it. Then setup [HPC_DME_APIs](https://github.com/CBIIT/HPC_DME_APIs) appropriately.
### Usage:

```bash
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