Code

BGC update#497

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apcraig merged 169 commits intoCICE-Consortium:mainCICE-Consortium/Icepack:mainfrom apcraig:bgcpr1apcraig/Icepack:bgcpr1Copy head branch name to clipboardSep 15, 2024

+3,378-2,680

Commits

Commits on Aug 4, 2022

• initial implementation of SNICAR-AD in Icepack, not tested but BFB in standard dEdd config

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• adding use_snicar flag (true if shortwave=dEdd_snicar)

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• initializing use_snicar based on shortwave namelist value

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Commits on Aug 5, 2022

• adding a few more arguments to the calling tree

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Commits on Aug 17, 2022

• Merge pull request CICE-Consortium#5 from CICE-Consortium/main

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Commits on Aug 22, 2022

• Merge branch 'main' of https://github.com/cice-consortium/icepack into snicar

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• remove repeat ridging warnings for niter=1

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• use 5-band wghtns for snicar

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Commits on Aug 23, 2022

• basic initialization for snicar tables

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Commits on Aug 24, 2022

• clean up trailing blanks

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• Merge pull request #4 from apcraig/snicar-clean01

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Commits on Aug 25, 2022

• interim commit with some snicar initialization, unconnected and not tested

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• Add data_dEdd_3band to icepack_init_radiation

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• Add ability to set SNICAR SSP data via icepack_parameters

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• Add reading of SNICAR SSP file in Icepack driver including

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• rebase, update, and test

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• Merge pull request CICE-Consortium#5 from apcraig/snwtable

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• Update ssp output

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Commits on Aug 26, 2022

• Reorder SNICAR SSP test data arrays to be consistent with source code

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• Merge pull request CICE-Consortium#6 from apcraig/sspoutput

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• move 5band data to subroutine; enable snicar testing on 1 no-ice grid cell

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• move more data to 3- and 5-band initialization routines, use module data for use_snicar

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• change snicar coefficient names and use module data for them

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• cleaning up argument lists

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Commits on Aug 27, 2022

• Add additional SNICAR SSP fields

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Commits on Aug 29, 2022

• Merge pull request CICE-Consortium#7 from apcraig/moresspio

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Commits on Aug 31, 2022

• set tmask=0 only for land cell

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Commits on Sep 1, 2022

• interim compute_dEdd_5bd subroutine (runs)

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• separate 3-band and 5-band compute_dEdd routines

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• Fix errors in calls to compute_dEdd. Some cleanup.

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• Remove duplicate Iabs calculation. More cleanup.

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Commits on Sep 2, 2022

• - Add icepack_shortwave_data

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• - Add USE_SNICARHC (snicar ssp hard coded tables) to reduce compile time

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• - Remove ssp_bcerad, ssp_bcgrerad from implementation

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• remove trailing blanks

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Commits on Sep 6, 2022

• Merge pull request CICE-Consortium#9 from apcraig/swdata

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• Cleanup icepack_shortwave_data

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• update test suite and icepack_in

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• update scripts if md5sum not available

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• Merge pull request CICE-Consortium#10 from apcraig/swdata1

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Commits on Sep 7, 2022

• Clean up shortwave data variable names

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• Merge pull request CICE-Consortium#11 from apcraig/swaero

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• Clean up icepack_shortwave

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Commits on Sep 8, 2022

• - Remove ncat, nilyr, nslyr, nblyr from interface arguments

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• Merge pull request CICE-Consortium#12 from apcraig/swclean

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Commits on Sep 11, 2022

• Update implementation of g(k), w0(k) in icepack_shortwave

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Commits on Sep 12, 2022

• Get rid of use_snicar flag, redundant with shortwave setting

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Commits on Sep 18, 2022

• update documentation

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• updating documentation

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• use module data rather than hardcoded rhoi

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• cleanup

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• update namelist and settings documentation

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• Merge pull request CICE-Consortium#13 from apcraig/aerclean

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Commits on Sep 23, 2022

• make icepack_warnings_getall public, snw_ssp_table=unknown, update user guide

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• add icepack_warnings_getall to interface module

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Commits on Sep 24, 2022

• Major cleanup of dEdd module, mainly white space and standard alignments. Also changes in precision for several constants in compute_dEdd_5bd and compute_dEdd_3bd, which might change answers in som…

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• bug fixes for ice/snow layer reciprocal, missing lines as in consortium icepack PR#400; bug fix for 5-band interpolation weights

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Commits on Sep 30, 2022

• Merge pull request CICE-Consortium#7 from eclare108213/snicar

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Commits on Oct 6, 2022

• mpassi options files

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• remove namelist entries that are the same as the defaults to avoid potential ambiguity later

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Commits on Oct 7, 2022

• Merge pull request CICE-Consortium#8 from eclare108213/testconfig1

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Commits on Oct 8, 2022

• Minor updates consistent with E3SM columnphysics modifications

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• Update spacing and documentation

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• Merge branch 'main' of https://github.com/cice-consortium/icepack into upd01a

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Commits on Oct 10, 2022

• First step in adding Tf

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• Fix some spacing and logic

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• Fix some documentation

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• Fix documentation formatting

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Commits on Oct 11, 2022

• Merge pull request CICE-Consortium#12 from dabail10/tfrz2

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• Merge pull request CICE-Consortium#10 from apcraig/e3smfix1

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• Merge branch 'cice-consortium/E3SM-icepack-initial-integration' into upd01a

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• Merge pull request CICE-Consortium#11 from apcraig/upd01a

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Commits on Oct 24, 2022

• namelist parameter to set maximum liquidus temperature

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• Merge branch 'cice-consortium/E3SM-icepack-initial-integration' into Tliquidus_limit

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• Merge pull request CICE-Consortium#13 from E3SM-Project/Tliquidus_limit

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Commits on Oct 25, 2022

• Modifications for bit-for-bit with current main in CICE

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• Merge pull request CICE-Consortium#14 from apcraig/Tffix

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Commits on Nov 11, 2022

• update aerosol code for vertical bgc

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• add init/query/write for hs_ssl_min

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Commits on Nov 18, 2022

• merge Icepack main to #5bf584f6b7f Nov 17, 2022

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• Merge branch 'main' of https://github.com/cice-consortium/icepack into e3smup1

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• Remove redundancy in public declaration

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• recover main bit-for-bit

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Commits on Nov 19, 2022

• update tfrz_option

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Commits on Nov 20, 2022

• Merge branch 'main' of https://github.com/cice-consortium/icepack into e3smup1

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Commits on Nov 21, 2022

• Merge pull request CICE-Consortium#16 from apcraig/e3smup1

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Commits on Nov 29, 2022

• Merge branch 'main' of https://github.com/cice-consortium/icepack into snowbrinebugs

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Commits on Nov 30, 2022

• Merge branch 'main' of https://github.com/cice-consortium/icepack into snowbrinebugs

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• Merge pull request CICE-Consortium#17 from apcraig/snowbrinebugs

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Commits on Dec 15, 2022

• Merge branch 'main' of https://github.com/cice-consortium/icepack into cice-consortium/E3SM-icepack-initial-integration

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• Merge pull request CICE-Consortium#18 from apcraig/e3sm_upd133

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Commits on Jan 25, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into e3smicep230125

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• Merge pull request CICE-Consortium#19 from apcraig/e3smicep230125

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Commits on Feb 3, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into icep230202

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• Merge pull request CICE-Consortium#20 from apcraig/icep230202

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Commits on Mar 20, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into icep230317

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Commits on Mar 24, 2023

• Merge pull request CICE-Consortium#21 from apcraig/icep230317

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Commits on Apr 14, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into ibranch3

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• Merge pull request CICE-Consortium#22 from E3SM-Project/ibranch3

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Commits on Apr 18, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into icep230418

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Commits on Apr 21, 2023

• Merge pull request CICE-Consortium#23 from apcraig/icep230418

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Commits on May 24, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into icep230524

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Commits on May 26, 2023

• Merge pull request CICE-Consortium#24 from apcraig/icep230524

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Commits on Jul 6, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into ibranch4

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Commits on Jul 7, 2023

• Merge pull request CICE-Consortium#25 from E3SM-Project/ibranch4

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Commits on Jul 18, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into cice-consortium/E3SM-icepack-initial-integration

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Commits on Jul 19, 2023

• Merge pull request CICE-Consortium#26 from apcraig/main230718

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Commits on Aug 19, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into cice-consortium/E3SM-icepack-initial-integration

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Commits on Aug 20, 2023

• clean up merge

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Commits on Aug 21, 2023

• Merge pull request CICE-Consortium#27 from apcraig/main230819

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Commits on Aug 30, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into cice-consortium/E3SM-icepack-initial-integration

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Commits on Sep 14, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into e3sm230830

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• Merge pull request CICE-Consortium#28 from apcraig/e3sm230830

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• Merge pull request CICE-Consortium#29 from apcraig/e3sm230914

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Commits on Sep 20, 2023

• Merge remote-tracking branch 'remotes/eclare/aero1' into current integration version

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Commits on Sep 25, 2023

• bring some mushy functions into icepack interface

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• elevate snow/mush enthalpy and salinity profile to interface

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Commits on Sep 26, 2023

• Merge pull request CICE-Consortium#31 from E3SM-Project/E3SMrefactor

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Commits on Sep 27, 2023

• Update documentation

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Commits on Sep 28, 2023

• Update documentation

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Commits on Sep 29, 2023

• Merge pull request CICE-Consortium#32 from apcraig/e3smdocs1

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Commits on Sep 30, 2023

• Merge branch 'main' of https://github.com/cice-consortium/icepack into upd230930

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• Merge pull request CICE-Consortium#33 from apcraig/upd230930

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Commits on Oct 11, 2023

• Adds changes to Icepack for bgc and zaerosols

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• Merge remote-tracking branch 'origin/njeffery/update-zaerosols-icepack' into njeffery/merge-bgc

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Commits on Oct 25, 2023

• Merge branch 'njeffery/merge-bgc' of https://github.com/njeffery/icepack into njeffery/merge-bgc-consortium

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Commits on Oct 31, 2023

• Remove deprecated field from zbgc

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Commits on Nov 16, 2023

• Updates icepack zbgc initialization for optional arguments

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Commits on Dec 11, 2023

• Correct initialization of DIC sources and sinks

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Commits on Mar 12, 2024

• Fixes to conserve carbon in icepack

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Commits on Mar 25, 2024

• Bug fix in step therm2 for BGC

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• Fix to icepack warning strings

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• Update icepack for new bgc

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• Move bgc tracer index initialization to driver, implemented with temporary CPP, NEWINITZBGC,

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• Split init_zbgc into three calls

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• Added flag to remove write statements

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• fixes a debug compile seg fault in bgc

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• Adds icepack parameter use_atm_dust_iron

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• Removes indexing of bgc tracers

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• Clean up icepack_intfc

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• Clean up init_zbgc

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• Initial modifications for standalone Icepack bgc capability

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• Add definitions for missing zbgc parameter arrays

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• Merge 'acraig/fix_tc10' into njeffery/fixes-to-bgc

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• Remove redundant Icepack interface arguments set in parameters and tracers

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• Migrate bgrid, cgrid, igrid, icgrid, swgrid to Icepack variables,

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• Update icepack_warnings to make it more thread safe

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• Merge branch 'njeffery/fixes-to-bgc' of https://github.com/e3sm-project/icepack into bgcpr1

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• Update bgc setup in driver and namelist

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• Merge branch 'main' of https://github.com/cice-consortium/icepack into bgcpr1

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• Update bgc namelist, revert some coupled settings

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• Merge branch 'bgcpr1' of https://github.com/apcraig/icepack into bgcpr1

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• Deprecate skl BGC option without removing skl code yet

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• Update BGC namelist defaults and documentation

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• Update flush implementation, fix unit number bug and check that

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• Updates to icepack bgc documentation

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• Merge pull request #1 from njeffery/update-bgc-doc

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• Corrections to bgc documentation

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• Merge pull request #2 from njeffery/update-bgc-doc

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• Updates bgc case settings documentation

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• Removed redundancy in bgc documentation

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• Corrected removal of redundancy

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• Removed extra space.

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• Merge pull request #4 from njeffery/bgcpr1-nj

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• Merge branch 'bgcpr1' of https://github.com/apcraig/icepack into bgcpr1

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• update documentation and update 3 bgc parameter defaults

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• Add zaero tests

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• Update Documentation

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• Update zaero test, using nblyr=7. Fixes conservation errors in zaero tests.

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