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Oops. Restarting the workflow for test-coverage.
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stephaniereinders committed Dec 6, 2024
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61 changes: 61 additions & 0 deletions .github/workflows/test-coverage.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:

name: test-coverage.yaml

permissions: read-all

jobs:
test-coverage:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::covr, any::xml2
needs: coverage

- name: Test coverage
run: |
cov <- covr::package_coverage(
quiet = FALSE,
clean = FALSE,
install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
)
covr::to_cobertura(cov)
shell: Rscript {0}

- uses: codecov/codecov-action@v4
with:
# Fail if error if not on PR, or if on PR and token is given
fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
file: ./cobertura.xml
plugin: noop
disable_search: true
token: ${{ secrets.CODECOV_TOKEN }}

- name: Show testthat output
if: always()
run: |
## --------------------------------------------------------------------
find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
shell: bash

- name: Upload test results
if: failure()
uses: actions/upload-artifact@v4
with:
name: coverage-test-failures
path: ${{ runner.temp }}/package
2 changes: 2 additions & 0 deletions README.md
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<!-- badges: start -->

[![R-CMD-check](https://github.com/CSAFE-ISU/handwriterRF/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/CSAFE-ISU/handwriterRF/actions/workflows/R-CMD-check.yaml)
[![Codecov test
coverage](https://codecov.io/gh/CSAFE-ISU/handwriterRF/graph/badge.svg)](https://app.codecov.io/gh/CSAFE-ISU/handwriterRF)
<!-- badges: end -->

HandwriterRF is designed to assist forensic document examiners by
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1 change: 1 addition & 0 deletions README.qmd
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<!-- badges: start -->
[![R-CMD-check](https://github.com/CSAFE-ISU/handwriterRF/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/CSAFE-ISU/handwriterRF/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/CSAFE-ISU/handwriterRF/graph/badge.svg)](https://app.codecov.io/gh/CSAFE-ISU/handwriterRF)
<!-- badges: end -->

HandwriterRF is designed to assist forensic document examiners by performing a statistical analysis on two handwriting samples. One or both of the samples could be from unknown writers. Two hypotheses are considered:
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