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Request for Organism Filter Option in get_seed_local() to Optimize Runtime #35

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hyoj-seo opened this issue Oct 14, 2024 · 0 comments

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@hyoj-seo
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Thank you for providing such a great program.

I am currently generating an ITS database using rCRUX. However, in the {barcode}_filtered_get_seeds_local_output_with_taxonomy.csv file from get_seed_local(), unwanted taxa occupy the majority, which significantly increases the runtime of the subsequent blast_seeds() process. Is it possible to use the organism option available in get_seed_remote() also for get_seed_local()?

Thank you in advance.

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