Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Improve run_primer_blastn() + ncbi_bin parameter #8

Open
Shaunson26 opened this issue Feb 6, 2023 · 0 comments
Open

Improve run_primer_blastn() + ncbi_bin parameter #8

Shaunson26 opened this issue Feb 6, 2023 · 0 comments
Labels
TODO Things to do

Comments

@Shaunson26
Copy link
Collaborator

Can improve the code in run_primer_blastn() to deal with if the binary is in the PATH or a user supplied path. Currently the code is copied for each instance, but one has an extra "-num_alignments", "10000000",.

Goal is to have 1 system2() call, where the command is build given what we know about the PATH or a user supplied path
@Shaunson26 Shaunson26 added the TODO Things to do label Feb 6, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
TODO Things to do
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@Shaunson26