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Clinical-Genomics · Oct 4, 2024 · 71c12cd · 71c12cd
1 parent e05d729
commit 71c12cd
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/fusion_report/common/net.py b/fusion_report/common/net.py
@@ -101,7 +101,7 @@ def get_large_file(url: str, no_ssl) -> None:
         LOG.info(f"Downloading {url}")
         try:
             headers = {"User-Agent": "Mozilla/5.0"}
-            response = requests.get(url, headers=headers, stream=True, verify = no_ssl)
+            response = requests.get(url, headers=headers, stream=True, verify=no_ssl)
             file = url.split("/")[-1].split("?")[0]
 
             if (
@@ -130,7 +130,7 @@ def get_cosmic_from_sanger(token: str, return_err: List[str], no_ssl) -> None:
             ),
         }
         try:
-            res = requests.get(url, headers=headers, verify = no_ssl)
+            res = requests.get(url, headers=headers, verify=no_ssl)
             auth_url: str = res.json()["url"]
             LOG.info(f"auth_url: {auth_url}")
             Net.get_large_file(auth_url, no_ssl)

diff --git a/fusion_report/download.py b/fusion_report/download.py
@@ -53,7 +53,9 @@ def download_all(self, params: Namespace) -> None:
             self.validate(params)
             if params.qiagen:
                 Logger(__name__).info("Downloading resources from QIAGEN...")
-                Net.get_cosmic_from_qiagen(self.cosmic_token, return_err, params.output, params.no_ssl)
+                Net.get_cosmic_from_qiagen(
+                    self.cosmic_token, return_err, params.output, params.no_ssl
+                )
             else:
                 Logger(__name__).info("Downloading resources from SANGER...")
                 Net.get_cosmic_from_sanger(self.cosmic_token, return_err, params.no_ssl)