Update to latest E3SM master #96
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Also, a little clean up.
Add metadata design doc to table of contents
Disable most linting until we have CMake build and modify clang-format style
added initial IO design docs for Omega - includes an IOStreams capability and a lower level IO interface - added the IO designs to the main doc index - modified requirement to include overwriting portions of a file, in response to review
- updated formatting to match OMEGA doc formatting - some minor changes in response to reviews - added another unit test - added the doc to the overall document index
* add OMEGA data types and YAKL arrays
- includes source header defining all supported OMEGA data types
- includes user and developer documentation sections
- includes a unit test that tests both the expected size of
standard types and the creation of YAKL host and device arrays
- doxygen comments have been added
- minor changes were made after review and linter results
Fix `.clang-format`
simplify clang format
initial cmake-based setup for Omega build * adds CMakeLists.txt files to build external libraries, Omega model and test * adds dummy source files as placeholders for Omega model and tests * Adds user-guide and developer-guide for Omega build --------- Co-authored-by: Xylar Asay-Davis <xylarstorm@gmail.com> Co-authored-by: Youngsung Kim <kimy@ornl.gov>
…ers (#26) add MachEnv code for MPI and other machine environment variables - includes source code and a unit test - includes sections for User and Developer guides
One code block is type `yaml`, not `yakl`. Sphinx doesn't understand type `vbnet` and I don't think this is correct for the CMAKE variable descriptions in any case.
Fix two small issues with the docs
This should fix "There was an issue sorting changed files from Github"
Update version of file-changes-action to 1.2.4
…omega0-sw Omega-0 Design Document: Requirements and Testing only This PR adds the design document for Omega-0, which will solve the shallow water equations with identical vertical layers and inactive tracers. It only includes the sections on Overview, Requirements, and Testing. Sections on Algorithmic Formulation and Design will be added in a subsequent PR.
This merge add the basic logging capabilities for Omega. These includes: * saving log in a log file in a build directory or to a user specified path. * Logging macros whose name starts with "LOG_" * Multiple logging levels: TRACE, DEBUG, INFO, WARN, WARN, ERROR, and CRITICAL * Custom log formatter for YAKL data types(experimental yet)
Adds the basic logging capabilities for Omega
Refactors the Omega build to collect build configurations from the E3SM case
Add auxiliary variables design document
ctest checks return code instead of PASS or FAIL output
Co-authored-by: Hyun-Gyu Kang <47987430+hyungyukang@users.noreply.github.com>
…omega0-time-stepping Time Stepping Design Doc
Initial SUM, MIN and MAX reductions
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Argh. Tried to use the sync button on github that has worked in the past, but this doesn't look right...I'll close this and try again. |
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This PR updates the Omega fork to the latest E3SM master to bring in recent changes to E3SM infrastructure
Checklist
Fixes #54