Merge pull request #266 from EESSIbot/update-software-overview-172421…

…3965 update overview of available software
EESSI · Aug 21, 2024 · 0f6ce6c · 0f6ce6c
2 parents e59aba5 + 2848cb7
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diff --git a/docs/available_software/data/json_data.json b/docs/available_software/data/json_data.json
diff --git a/docs/available_software/data/json_data_detail.json b/docs/available_software/data/json_data_detail.json
diff --git a/docs/available_software/detail/HTSlib.md b/docs/available_software/detail/HTSlib.md
@@ -18,11 +18,12 @@ The overview below shows which HTSlib installations are available per target arc
 To start using HTSlib, load one of these modules using a `module load` command like:
 
 ```shell
-module load HTSlib/1.18-GCC-12.3.0
+module load HTSlib/1.19.1-GCC-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|HTSlib/1.19.1-GCC-13.2.0|x|x|x|x|x|x|x|x|x|
 |HTSlib/1.18-GCC-12.3.0|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/STAR.md b/docs/available_software/detail/STAR.md
@@ -0,0 +1,28 @@
+---
+hide:
+  - toc
+---
+
+STAR
+====
+
+
+STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
+
+https://github.com/alexdobin/STAR
+# Available modules
+
+
+The overview below shows which STAR installations are available per target architecture in EESSI, ordered based on software version (new to old).
+
+To start using STAR, load one of these modules using a `module load` command like:
+
+```shell
+module load STAR/2.7.11b-GCC-13.2.0
+```
+
+*(This data was automatically generated on {{ generated_time }})*  
+
+| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|STAR/2.7.11b-GCC-13.2.0|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/xxd.md b/docs/available_software/detail/xxd.md
@@ -18,11 +18,12 @@ The overview below shows which xxd installations are available per target archit
 To start using xxd, load one of these modules using a `module load` command like:
 
 ```shell
-module load xxd/9.0.2112-GCCcore-12.3.0
+module load xxd/9.1.0307-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|xxd/9.1.0307-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |xxd/9.0.2112-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
diff --git a/mkdocs.yml b/mkdocs.yml
@@ -126,7 +126,7 @@ extra:
     - icon: fontawesome/brands/twitter
       link: https://twitter.com/eessi_hpc
   # this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
-  generated_time: "Mon, 19 Aug 2024 at 12:37:17 UTC"
+  generated_time: "Wed, 21 Aug 2024 at 04:19:24 UTC"
 extra_javascript:
   # mermaid diagram
   - https://cdn.jsdelivr.net/npm/mermaid@10/dist/mermaid.esm.min.mjs