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{2023.06} Nextflow/23.10.0 #409

Merged
merged 1 commit into from
Dec 1, 2023
Merged

{2023.06} Nextflow/23.10.0 #409

merged 1 commit into from
Dec 1, 2023

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ocaisa
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@ocaisa ocaisa commented Dec 1, 2023

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eessi-bot bot commented Dec 1, 2023

Instance eessi-bot-mc-aws is configured to build:

  • arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/generic for repo eessi-hpc.org-2023.06-software
  • arch x86_64/generic for repo eessi.io-2023.06-compat
  • arch x86_64/generic for repo eessi.io-2023.06-software
  • arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
  • arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi.io-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
  • arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/generic for repo eessi-hpc.org-2023.06-software
  • arch aarch64/generic for repo eessi.io-2023.06-compat
  • arch aarch64/generic for repo eessi.io-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

@ocaisa
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ocaisa commented Dec 1, 2023

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

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eessi-bot bot commented Dec 1, 2023 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1611

date job status comment
Dec 01 10:56:52 UTC 2023 submitted job id 1611 awaits release by job manager
Dec 01 10:56:58 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 10:57:59 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1611.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1701428262.tar.gzsize: 101 MiB (106140048 bytes)
entries: 21
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
Nextflow/23.10.0
other under 2023.06/software/linux/x86_64/amd/zen3
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 10:57:59 UTC 2023 test result (no tests yet)
Dec 01 11:16:38 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen3-1701428262.tar.gz to S3 bucket succeeded

@ocaisa
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ocaisa commented Dec 1, 2023

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from ocaisa

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1612

date job status comment
Dec 01 11:05:52 UTC 2023 submitted job id 1612 awaits release by job manager
Dec 01 11:06:03 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:11:23 UTC 2023 running job 1612 is running
Dec 01 11:12:31 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1612.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1701429086.tar.gzsize: 101 MiB (106138467 bytes)
entries: 21
modules under 2023.06/software/linux/x86_64/generic/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/x86_64/generic/software
Nextflow/23.10.0
other under 2023.06/software/linux/x86_64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:12:31 UTC 2023 test result (no tests yet)
Dec 01 11:16:58 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-generic-1701429086.tar.gz to S3 bucket succeeded

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1613

date job status comment
Dec 01 11:05:56 UTC 2023 submitted job id 1613 awaits release by job manager
Dec 01 11:06:05 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:11:25 UTC 2023 running job 1613 is running
Dec 01 11:12:33 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1613.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1701429089.tar.gzsize: 101 MiB (106139978 bytes)
entries: 21
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/x86_64/intel/haswell/software
Nextflow/23.10.0
other under 2023.06/software/linux/x86_64/intel/haswell
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:12:33 UTC 2023 test result (no tests yet)
Dec 01 11:17:20 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-haswell-1701429089.tar.gz to S3 bucket succeeded

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1614

date job status comment
Dec 01 11:06:00 UTC 2023 submitted job id 1614 awaits release by job manager
Dec 01 11:06:07 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:11:27 UTC 2023 running job 1614 is running
Dec 01 11:12:35 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1614.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1701429079.tar.gzsize: 101 MiB (106138271 bytes)
entries: 21
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
Nextflow/23.10.0
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:12:35 UTC 2023 test result (no tests yet)
Dec 01 11:17:41 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1701429079.tar.gz to S3 bucket succeeded

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1615

date job status comment
Dec 01 11:06:04 UTC 2023 submitted job id 1615 awaits release by job manager
Dec 01 11:07:15 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:14:44 UTC 2023 running job 1615 is running
Dec 01 11:15:51 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1615.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1701429291.tar.gzsize: 101 MiB (106138923 bytes)
entries: 21
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
Nextflow/23.10.0
other under 2023.06/software/linux/x86_64/amd/zen2
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:15:51 UTC 2023 test result (no tests yet)
Dec 01 11:18:02 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-1701429291.tar.gz to S3 bucket succeeded

@eessi-bot eessi-bot
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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1616

date job status comment
Dec 01 11:06:08 UTC 2023 submitted job id 1616 awaits release by job manager
Dec 01 11:07:09 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:13:38 UTC 2023 running job 1616 is running
Dec 01 11:14:46 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1616.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1701429236.tar.gzsize: 101 MiB (106139138 bytes)
entries: 21
modules under 2023.06/software/linux/aarch64/generic/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/aarch64/generic/software
Nextflow/23.10.0
other under 2023.06/software/linux/aarch64/generic
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:14:46 UTC 2023 test result (no tests yet)
Dec 01 11:18:23 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-aarch64-generic-1701429236.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1617

date job status comment
Dec 01 11:06:12 UTC 2023 submitted job id 1617 awaits release by job manager
Dec 01 11:07:11 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:13:40 UTC 2023 running job 1617 is running
Dec 01 11:14:48 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1617.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1701429237.tar.gzsize: 101 MiB (106138849 bytes)
entries: 21
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/aarch64/neoverse_n1/software
Nextflow/23.10.0
other under 2023.06/software/linux/aarch64/neoverse_n1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:14:48 UTC 2023 test result (no tests yet)
Dec 01 11:18:43 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_n1-1701429237.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Dec 1, 2023 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.12/pr_409/1618

date job status comment
Dec 01 11:06:16 UTC 2023 submitted job id 1618 awaits release by job manager
Dec 01 11:07:13 UTC 2023 released job awaits launch by Slurm scheduler
Dec 01 11:12:29 UTC 2023 running job 1618 is running
Dec 01 11:13:42 UTC 2023 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1618.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1701429159.tar.gzsize: 101 MiB (106139773 bytes)
entries: 21
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
Nextflow/23.10.0.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
Nextflow/23.10.0
other under 2023.06/software/linux/aarch64/neoverse_v1
.lmod/cache/spiderT.lua
.lmod/cache/spiderT.luac_5.1
.lmod/cache/timestamp
Dec 01 11:13:42 UTC 2023 test result (no tests yet)
Dec 01 11:19:04 UTC 2023 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_v1-1701429159.tar.gz to S3 bucket succeeded

@bedroge bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI 2023.06-software.eessi.io 2023.06 version of software.eessi.io labels Dec 1, 2023
@bedroge bedroge merged commit 08af21a into EESSI:2023.06-software.eessi.io Dec 1, 2023
32 checks passed
TopRichard added a commit to TopRichard/bot-software-layer1 that referenced this pull request Jun 17, 2024
@TopRichard
Merge pull request EESSI#409 from TopRichard/nessi-2023.06-not_use_me…
b5cf785 
…mory_per_node_option

Use default memory option during reframe tests
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@bedroge bedroge bedroge approved these changes

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@ocaisa @bedroge