{2023.06}[2023a,sapphire_rapids] R-bundle-CRAN 2023.12

[bedroge]

25 out of 148 required modules missing:

* NLopt/2.7.1-GCCcore-12.3.0 (NLopt-2.7.1-GCCcore-12.3.0.eb)
* nettle/3.9.1-GCCcore-12.3.0 (nettle-3.9.1-GCCcore-12.3.0.eb)
* libogg/1.3.5-GCCcore-12.3.0 (libogg-1.3.5-GCCcore-12.3.0.eb)
* FLAC/1.4.2-GCCcore-12.3.0 (FLAC-1.4.2-GCCcore-12.3.0.eb)
* libvorbis/1.3.7-GCCcore-12.3.0 (libvorbis-1.3.7-GCCcore-12.3.0.eb)
* Xvfb/21.1.8-GCCcore-12.3.0 (Xvfb-21.1.8-GCCcore-12.3.0.eb)
* libopus/1.4-GCCcore-12.3.0 (libopus-1.4-GCCcore-12.3.0.eb)
* libsndfile/1.2.2-GCCcore-12.3.0 (libsndfile-1.2.2-GCCcore-12.3.0.eb)
* PostgreSQL/16.1-GCCcore-12.3.0 (PostgreSQL-16.1-GCCcore-12.3.0.eb)
* GEOS/3.12.0-GCC-12.3.0 (GEOS-3.12.0-GCC-12.3.0.eb)
* libgeotiff/1.7.1-GCCcore-12.3.0 (libgeotiff-1.7.1-GCCcore-12.3.0.eb)
* libtirpc/1.3.3-GCCcore-12.3.0 (libtirpc-1.3.3-GCCcore-12.3.0.eb)
* HDF/4.2.16-2-GCCcore-12.3.0 (HDF-4.2.16-2-GCCcore-12.3.0.eb)
* CFITSIO/4.3.0-GCCcore-12.3.0 (CFITSIO-4.3.0-GCCcore-12.3.0.eb)
* arpack-ng/3.9.0-foss-2023a (arpack-ng-3.9.0-foss-2023a.eb)
* Armadillo/12.6.2-foss-2023a (Armadillo-12.6.2-foss-2023a.eb)
* json-c/0.16-GCCcore-12.3.0 (json-c-0.16-GCCcore-12.3.0.eb)
* Xerces-C++/3.2.4-GCCcore-12.3.0 (Xerces-C++-3.2.4-GCCcore-12.3.0.eb)
* Brunsli/0.1-GCCcore-12.3.0 (Brunsli-0.1-GCCcore-12.3.0.eb)
* Imath/3.1.7-GCCcore-12.3.0 (Imath-3.1.7-GCCcore-12.3.0.eb)
* OpenEXR/3.1.7-GCCcore-12.3.0 (OpenEXR-3.1.7-GCCcore-12.3.0.eb)
* LERC/4.0.0-GCCcore-12.3.0 (LERC-4.0.0-GCCcore-12.3.0.eb)
* SWIG/4.1.1-GCCcore-12.3.0 (SWIG-4.1.1-GCCcore-12.3.0.eb)
* GDAL/3.7.1-foss-2023a (GDAL-3.7.1-foss-2023a.eb)
* R-bundle-CRAN/2023.12-foss-2023a (R-bundle-CRAN-2023.12-foss-2023a.eb)

Doesn't seem to have any overlap with #892, so should be safe to build it in parallel.

[eessi-bot]

Instance eessi-bot-mc-aws is configured to build for:

• architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphire_rapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
• repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

[eessi-bot]

Instance eessi-bot-mc-azure is configured to build for:

• architectures: x86_64/amd/zen4
• repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

[bedroge]

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids

[eessi-bot]

Updates by the bot instance eessi-bot-mc-aws (click for details)

• received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

  • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids

• handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

  • submitted job 42414, for details & status see {2023.06}[2023a,sapphire_rapids] R-bundle-CRAN 2023.12 #893 (comment)

[eessi-bot]

Updates by the bot instance eessi-bot-mc-azure (click for details)

• received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/sapphire_rapids from bedroge

  • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids

• handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/sapphire_rapids resulted in:

  • no jobs were submitted

[eessi-bot]

New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-intel-sapphire_rapids for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2025.01/pr_893/42414

date	job status	comment
Jan 24 22:46:01 UTC 2025	submitted	job id 42414 awaits release by job manager
Jan 24 22:46:56 UTC 2025	released	job awaits launch by Slurm scheduler
Jan 24 22:47:59 UTC 2025	running	job 42414 is running
Jan 25 17:16:58 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-42414.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737824513.tar.gz size: 1701 MiB (1784279645 bytes) entries: 76849 modules under 2023.06/software/linux/x86_64/intel/sapphire_rapids/modules/all Armadillo/12.6.2-foss-2023a.lua arpack-ng/3.9.0-foss-2023a.lua Brunsli/0.1-GCCcore-12.3.0.lua CFITSIO/4.3.0-GCCcore-12.3.0.lua FLAC/1.4.2-GCCcore-12.3.0.lua GDAL/3.7.1-foss-2023a.lua GEOS/3.12.0-GCC-12.3.0.lua HDF/4.2.16-2-GCCcore-12.3.0.lua Highway/1.0.4-GCCcore-12.3.0.lua Imath/3.1.7-GCCcore-12.3.0.lua json-c/0.16-GCCcore-12.3.0.lua LERC/4.0.0-GCCcore-12.3.0.lua libgeotiff/1.7.1-GCCcore-12.3.0.lua libogg/1.3.5-GCCcore-12.3.0.lua libopus/1.4-GCCcore-12.3.0.lua libsndfile/1.2.2-GCCcore-12.3.0.lua libtirpc/1.3.3-GCCcore-12.3.0.lua libvorbis/1.3.7-GCCcore-12.3.0.lua nettle/3.9.1-GCCcore-12.3.0.lua NLopt/2.7.1-GCCcore-12.3.0.lua OpenEXR/3.1.7-GCCcore-12.3.0.lua PostgreSQL/16.1-GCCcore-12.3.0.lua R-bundle-CRAN/2023.12-foss-2023a.lua SWIG/4.1.1-GCCcore-12.3.0.lua Xerces-C++/3.2.4-GCCcore-12.3.0.lua Xvfb/21.1.8-GCCcore-12.3.0.lua software under 2023.06/software/linux/x86_64/intel/sapphire_rapids/software Armadillo/12.6.2-foss-2023a arpack-ng/3.9.0-foss-2023a Brunsli/0.1-GCCcore-12.3.0 CFITSIO/4.3.0-GCCcore-12.3.0 FLAC/1.4.2-GCCcore-12.3.0 GDAL/3.7.1-foss-2023a GEOS/3.12.0-GCC-12.3.0 HDF/4.2.16-2-GCCcore-12.3.0 Highway/1.0.4-GCCcore-12.3.0 Imath/3.1.7-GCCcore-12.3.0 json-c/0.16-GCCcore-12.3.0 LERC/4.0.0-GCCcore-12.3.0 libgeotiff/1.7.1-GCCcore-12.3.0 libogg/1.3.5-GCCcore-12.3.0 libopus/1.4-GCCcore-12.3.0 libsndfile/1.2.2-GCCcore-12.3.0 libtirpc/1.3.3-GCCcore-12.3.0 libvorbis/1.3.7-GCCcore-12.3.0 nettle/3.9.1-GCCcore-12.3.0 NLopt/2.7.1-GCCcore-12.3.0 OpenEXR/3.1.7-GCCcore-12.3.0 PostgreSQL/16.1-GCCcore-12.3.0 R-bundle-CRAN/2023.12-foss-2023a SWIG/4.1.1-GCCcore-12.3.0 Xerces-C++/3.2.4-GCCcore-12.3.0 Xvfb/21.1.8-GCCcore-12.3.0 other under 2023.06/software/linux/x86_64/intel/sapphire_rapids no other files in tarball
Jan 25 17:16:58 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] (1/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86-64-intel-srapids-node+default P: perf: 623.325 timesteps/s (r:0, l:None, u:None) [ OK ] (2/9) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86-64-intel-srapids-node+default P: latency: 2.1 us (r:0, l:None, u:None) [ OK ] (3/9) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86-64-intel-srapids-node+default P: latency: 1.99 us (r:0, l:None, u:None) [ OK ] (4/9) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86-64-intel-srapids-node+default P: latency: 4.05 us (r:0, l:None, u:None) [ OK ] (5/9) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86-64-intel-srapids-node+default P: latency: 4.24 us (r:0, l:None, u:None) [ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86-64-intel-srapids-node+default P: latency: 0.41 us (r:0, l:None, u:None) [ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86-64-intel-srapids-node+default P: latency: 0.4 us (r:0, l:None, u:None) [ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86-64-intel-srapids-node+default P: bandwidth: 12935.49 MB/s (r:0, l:None, u:None) [ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86-64-intel-srapids-node+default P: bandwidth: 13057.95 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-42414.out ✅ no message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case
Jan 25 17:36:42 UTC 2025	uploaded	transfer of eessi-2023.06-software-linux-x86_64-intel-sapphire_rapids-1737824513.tar.gz to S3 bucket succeeded

[boegel]

@bedroge Conflict to resolve...

[boegel]

@bedroge Was it just a trivial merge conflict, does it affect the ongoing build?

[bedroge]

@bedroge Was it just a trivial merge conflict, does it affect the ongoing build?

This PR touches the same easystack as another PR, but they shouldn't have any overlap in terms of dependencies (see first comment in this PR).

[boegel]

@bedroge Was it just a trivial merge conflict, does it affect the ongoing build?

This PR touches the same easystack as another PR, but they shouldn't have any overlap in terms of dependencies (see first comment in this PR).

I checked that, couldn't find any overlap either, so OK to deploy once build is done...

[boegel]

deploy triggered, so merging...

[eessi-bot]

PR merged! Moved ['/project/def-users/SHARED/jobs/2025.01/pr_893/42414'] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.01.25

[eessi-build-deploy-bot-deucalion]

PR merged! Moved [] to /home/kehoste/project_dir/bot/trash-bin #$HOME/trash_bin/EESSI/software-layer/2025.01.25

[eessi-bot]

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.01.25