-
Notifications
You must be signed in to change notification settings - Fork 9
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Various improvements to filtering approach. Including: - use of synthetic oversampling to balance initial + and - datasets. - Initial dataset selection improved. - Splicing signal detection improved. - Added ability to clean decision boundary using ENN (might improve performance in some cases and computational cost). - Interface now allows user to control threshold levels to modify filtering sensitivity and precision.
- Loading branch information
Showing
51 changed files
with
3,720 additions
and
2,144 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,93 +1,13 @@ | ||
| { | ||
| "parameters": { | ||
| "M1-canonical_ss": { | ||
| "operator": "in", | ||
| "value": ["N", "S"] | ||
| }, | ||
| "M2-nb_reads": { | ||
| "operator": "lte", | ||
| "value": 1 | ||
| }, | ||
| "M3-nb_dist_aln": { | ||
| "operator": "gte", | ||
| "value": 2 | ||
| }, | ||
| "M4-nb_rel_aln": { | ||
| "operator": "eq", | ||
| "value": 0 | ||
| }, | ||
| "M11-entropy": { | ||
| "operator": "lt", | ||
| "value": 1.0 | ||
| }, | ||
| "M11-entropy.2": { | ||
| "operator": "gt", | ||
| "value": 2.0 | ||
| }, | ||
| "M11-entropy.3": { | ||
| "operator": "eq", | ||
| "value": 0.0 | ||
| }, | ||
| "M12-maxmmes": { | ||
| "operator": "lt", | ||
| "value": 7 | ||
| }, | ||
| "M12-maxmmes.2": { | ||
| "operator": "lt", | ||
| "value": 10 | ||
| }, | ||
| "M12-maxmmes.3": { | ||
| "operator": "lt", | ||
| "value": 20 | ||
| }, | ||
| "M8-max_min_anc": { | ||
| "operator": "lt", | ||
| "value": 16 | ||
| }, | ||
| "Suspect": { | ||
| "operator": "eq", | ||
| "value": 1 | ||
| }, | ||
| "PFP": { | ||
| "operator": "eq", | ||
| "value": 1 | ||
| }, | ||
| "M13-hamming5p": { | ||
| "operator": "lte", | ||
| "value": 2 | ||
| }, | ||
| "M14-hamming3p": { | ||
| "operator": "lte", | ||
| "value": 2 | ||
| }, | ||
| "M19-mean_mismatches": { | ||
| "operator": "gte", | ||
| "value": 5.0 | ||
| }, | ||
| "M19-mean_mismatches.2": { | ||
| "operator": "gte", | ||
| "value": 2.0 | ||
| }, | ||
| "M20-nb_usrs": { | ||
| "operator": "eq", | ||
| "value": 0 | ||
| }, | ||
| "M20-nb_usrs.2": { | ||
| "operator": "eq", | ||
| "value": 1 | ||
| }, | ||
| "M21-nb_msrs": { | ||
| "operator": "gte", | ||
| "value": 1 | ||
| }, | ||
| "M22-rel2raw": { | ||
| "operator": "lt", | ||
| "value": 0.9 | ||
| }, | ||
| "M22-rel2raw.2": { | ||
| "operator": "eq", | ||
| "value": 0.0 | ||
| "value": 0.5 | ||
| } | ||
| }, | ||
| "expression": "( M12-maxmmes & M22-rel2raw )" | ||
| "expression": "( M12-maxmmes & M22-rel2raw )" | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Oops, something went wrong.