Merge pull request #2 from Ecosystem-Assessments/CST-241-deploy-app

CST-241 Dockerisation

DESCRIPTION

@@ -0,0 +1,20 @@
+Package: edriver
+Title: eDriver
+Version: 1.0.0
+Authors@R: 
+    person(given = "David",
+           family = "Beauchesne",
+           role = c("aut", "cre"),
+           email = "david.beauchesne@insileco.io")
+Description: Shiny application to visualize eDrivers platform data.
+License: GPLv3 + file LICENSE
+Imports: 
+    raster,
+    leaflet,
+    shiny,
+    shinyjs,
+    magrittr,
+    sf,
+    dplyr,
+    tidyr
+Encoding: UTF-8

Dockerfile

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+# Base R Shiny image
+FROM rocker/geospatial:latest
+
+RUN apt-get update && apt-get install -y 
+
+# Copy the Shiny app code
+WORKDIR /home/app
+ADD . /home/app
+
+# Install R dependencies
+RUN install2.r remotes
+RUN Rscript -e 'remotes::install_deps()'
+
+# Expose the application port
+EXPOSE 8083
+
+# Run the R Shiny app
+CMD Rscript -e "shiny::runApp(port = 8083, host = '0.0.0.0')"

README.md

@@ -0,0 +1,24 @@
+# eDrivers application
+
+Shiny application to visualize eDrivers platform data.
+
+## Local deployment
+
+```bash
+Rscript -e "shiny::runApp(port = 8083, host = '0.0.0.0')"
+```
+
+## Docker deployment
+
+**Requirements**
+
+- Install docker on your computer: https://docs.docker.com/engine/install/
+
+**Build and deploy the application within a container**
+
+```bash
+docker build -t edrivers . && docker run -p 8083:8083 -it --rm edriver
+```
+Deployment tested on `Docker version 25.0.0`
+
+

code/cumulIntensity.R

@@ -5,7 +5,6 @@
 # library(raster)
 # library(magrittr)
 # library(sf)
-# library(rgdal)
 # # load('./data/marimekkoFd.RData')
 # # load('./data/drivers.RData')
 # load('./data/dr.RData')

code/param.R

@@ -5,7 +5,6 @@ library(shiny)
 library(shinyjs)
 library(magrittr)
 library(sf)
-library(rgdal)
 library(dplyr)
 library(tidyr)