new release: "Hot tub time machine"

EnvironmentOntology · Mar 27, 2017 · 9c060a6 · 9c060a6
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diff --git a/envo.json b/envo.json
diff --git a/envo.obo b/envo.obo
diff --git a/envo.owl b/envo.owl
diff --git a/imports/foodon_import.obo b/imports/foodon_import.obo
@@ -0,0 +1,72 @@
+format-version: 1.2
+ontology: envo/imports/foodon_import
+
+[Term]
+id: FOODON:00001002
+name: product type, foodon
+def: "A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure." [Wikipedia:Food]
+
+[Term]
+id: FOODON:00001143
+name: fungal product
+is_a: FOODON:00001145 ! microbial food product
+
+[Term]
+id: FOODON:00001145
+name: microbial food product
+is_a: FOODON:00001002 ! product type, foodon
+
+[Term]
+id: FOODON:00001287
+name: mushroom
+xref: LANGUAL:B1467
+is_a: FOODON:00001143 ! fungal product
+is_a: FOODON:03412035 ! basidiomycetes
+property_value: hasSynonym "fungi" xsd:string
+property_value: hasSynonym "wild mushroom" xsd:string
+property_value: IAO:0000114 IAO:0000428
+property_value: IAO:0000412 http://langual.org xsd:string
+
+[Term]
+id: FOODON:03411215
+name: algae, bacteria or fungus used as food source
+xref: LANGUAL:B1215
+is_a: FOODON:03411564 ! food source
+property_value: IAO:0000114 IAO:0000428
+property_value: IAO:0000412 http://langual.org xsd:string
+
+[Term]
+id: FOODON:03411261
+name: fungus
+xref: LANGUAL:B1261
+is_a: FOODON:03411215 ! algae, bacteria or fungus used as food source
+property_value: IAO:0000114 IAO:0000428
+property_value: IAO:0000412 http://langual.org xsd:string
+
+[Term]
+id: FOODON:03411564
+name: food source
+def: "Individual plant or animal from which the food product or its major ingredient is derived; also a chemical food source [FDA CFSAN 1995]." []
+comment: LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term.
+xref: LANGUAL:B1564
+property_value: IAO:0000114 IAO:0000428
+property_value: IAO:0000412 http://langual.org xsd:string
+
+[Term]
+id: FOODON:03412035
+name: basidiomycetes
+def: "*Basidiomycota* is one of two large phyla that, together with the *Ascomycota*, constitute the subkingdom *Dikarya* (often referred to as the \"higher fungi\") within the kingdom Fungi. More specifically the *Basidiomycota* include these groups: mushrooms, puffballs, stinkhorns, bracket fungi, other polypores, jelly fungi, boletes, chanterelles, earth stars, smuts, bunts, rusts, mirror yeasts, and the human pathogenic yeast *Cryptococcus*." []
+synonym: "NCBITaxon:5204" BROAD []
+xref: http://eol.org/pages/5664
+xref: LANGUAL:B2035
+is_a: FOODON:03411261 ! fungus
+property_value: hasSynonym "basidiomycota" xsd:string
+property_value: hasSynonym "basidiomycotina" xsd:string
+property_value: hasSynonym "basidios" xsd:string
+property_value: hasSynonym "club fungi" xsd:string
+property_value: hasSynonym "teliomycetes" xsd:string
+property_value: hasSynonym "ustomycetes" xsd:string
+property_value: IAO:0000114 IAO:0000428
+property_value: IAO:0000119 WIKIPEDIA:Basidiomycota xsd:string
+property_value: IAO:0000412 http://langual.org xsd:string
+
diff --git a/imports/foodon_import.owl b/imports/foodon_import.owl
@@ -0,0 +1,189 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/envo/imports/foodon_import.owl#"
+     xml:base="http://purl.obolibrary.org/obo/envo/imports/foodon_import.owl"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:obo="http://purl.obolibrary.org/obo/">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/imports/foodon_import.owl"/>
+
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Annotation properties
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/IAO_0000412 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412"/>
+
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
+
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
+
+
+
+    <!-- http://www.geneontology.org/formats/oboInOwl#hasSynonym -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonym"/>
+
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Classes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_00001002 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_00001002">
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure.</obo:IAO_0000115>
+        <rdfs:label xml:lang="en">product type, foodon</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/FOODON_00001002"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A substance, usually composed primarily of carbohydrates, fats, water and/or proteins, that can be eaten or drunk by an animal or human being for nutrition or pleasure.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wikipedia:Food</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_00001143 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_00001143">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_00001145"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fungal product</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_00001145 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_00001145">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_00001002"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">microbial food product</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_00001287 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_00001287">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_00001143"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_03412035"/>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
+        <obo:IAO_0000412>http://langual.org</obo:IAO_0000412>
+        <oboInOwl:hasDbXref>LANGUAL:B1467</oboInOwl:hasDbXref>
+        <oboInOwl:hasSynonym xml:lang="en">fungi</oboInOwl:hasSynonym>
+        <oboInOwl:hasSynonym xml:lang="en">wild mushroom</oboInOwl:hasSynonym>
+        <rdfs:label xml:lang="en">mushroom</rdfs:label>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mushroom</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_03411215 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_03411215">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_03411564"/>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
+        <obo:IAO_0000412>http://langual.org</obo:IAO_0000412>
+        <oboInOwl:hasDbXref>LANGUAL:B1215</oboInOwl:hasDbXref>
+        <rdfs:label xml:lang="en">algae, bacteria or fungus used as food source</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_03411261 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_03411261">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_03411215"/>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
+        <obo:IAO_0000412>http://langual.org</obo:IAO_0000412>
+        <oboInOwl:hasDbXref>LANGUAL:B1261</oboInOwl:hasDbXref>
+        <rdfs:label xml:lang="en">fungus</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_03411564 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_03411564">
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
+        <obo:IAO_0000115 xml:lang="en">Individual plant or animal from which the food product or its major ingredient is derived; also a chemical food source [FDA CFSAN 1995].</obo:IAO_0000115>
+        <obo:IAO_0000412>http://langual.org</obo:IAO_0000412>
+        <oboInOwl:hasDbXref>LANGUAL:B1564</oboInOwl:hasDbXref>
+        <rdfs:comment xml:lang="en">LanguaL curation note: This term is for CLASSIFICATION ONLY; DO NOT USE term in indexing. Use a more precise narrower term.</rdfs:comment>
+        <rdfs:label xml:lang="en">food source</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/FOODON_03412035 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/FOODON_03412035">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/FOODON_03411261"/>
+        <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000428"/>
+        <obo:IAO_0000115 xml:lang="en">*Basidiomycota* is one of two large phyla that, together with the *Ascomycota*, constitute the subkingdom *Dikarya* (often referred to as the &quot;higher fungi&quot;) within the kingdom Fungi. More specifically the *Basidiomycota* include these groups: mushrooms, puffballs, stinkhorns, bracket fungi, other polypores, jelly fungi, boletes, chanterelles, earth stars, smuts, bunts, rusts, mirror yeasts, and the human pathogenic yeast *Cryptococcus*.</obo:IAO_0000115>
+        <obo:IAO_0000119>WIKIPEDIA:Basidiomycota</obo:IAO_0000119>
+        <obo:IAO_0000412>http://langual.org</obo:IAO_0000412>
+        <oboInOwl:hasBroadSynonym rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_5204"/>
+        <oboInOwl:hasDbXref>LANGUAL:B2035</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>http://eol.org/pages/5664</oboInOwl:hasDbXref>
+        <oboInOwl:hasSynonym xml:lang="en">basidiomycota</oboInOwl:hasSynonym>
+        <oboInOwl:hasSynonym xml:lang="en">basidiomycotina</oboInOwl:hasSynonym>
+        <oboInOwl:hasSynonym xml:lang="en">basidios</oboInOwl:hasSynonym>
+        <oboInOwl:hasSynonym xml:lang="en">club fungi</oboInOwl:hasSynonym>
+        <oboInOwl:hasSynonym xml:lang="en">teliomycetes</oboInOwl:hasSynonym>
+        <oboInOwl:hasSynonym xml:lang="en">ustomycetes</oboInOwl:hasSynonym>
+        <rdfs:label xml:lang="en">basidiomycetes</rdfs:label>
+    </owl:Class>
+</rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 0.0.1+91bea50) https://github.com/owlcs/owlapi -->
+