Merge branch 'master' into cuda-heat-example-w-quaditer

.github/workflows/Check.yml

@@ -38,7 +38,7 @@ jobs:
         run: |
           using Ferrite, ExplicitImports, Metis, BlockArrays
           # Check Ferrite
-          allow_unanalyzable = (ApplyStrategy, ColoringAlgorithm) # baremodules
+          allow_unanalyzable = (ColoringAlgorithm,) # baremodules
           check_no_implicit_imports(Ferrite; allow_unanalyzable)
           check_no_stale_explicit_imports(Ferrite; allow_unanalyzable)
           check_all_qualified_accesses_via_owners(Ferrite)

.github/workflows/Downstream.yml

@@ -0,0 +1,59 @@
+# Based on https://github.com/JuliaDiff/ChainRulesCore.jl/blob/main/.github/workflows/IntegrationTest.yml
+name: Downstream
+
+on:
+  push:
+    branches: ['master']
+    tags: ['*']
+  pull_request:
+
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+
+jobs:
+  test:
+    name: ${{ matrix.package.repo }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        julia-version: ['1']
+        os: ['ubuntu-latest']
+        package:
+          # - {user: 'Ferrite-FEM', repo: 'FerriteDistributed.jl'} # Requires more efforts to be updated to 1.0
+          - {user: 'Ferrite-FEM', repo: 'FerriteGmsh.jl'}
+          - {user: 'Ferrite-FEM', repo: 'FerriteMeshParser.jl'}
+          # - {user: 'Ferrite-FEM', repo: 'FerriteViz.jl'} # Requires release
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.julia-version }}
+      - uses: julia-actions/cache@v2
+      # - uses: julia-actions/julia-buildpkg@v1
+      - name: Clone Downstream
+        uses: actions/checkout@v4
+        with:
+          repository: ${{ matrix.package.user }}/${{ matrix.package.repo }}
+          path: downstream
+      - name: Load this and run the downstream tests
+        shell: julia --project=downstream {0}
+        run: |
+          using Pkg
+          try
+              # force it to use this PR's version of the package
+              Pkg.develop(PackageSpec(path="."))  # resolver may fail with main deps
+              Pkg.update()
+              Pkg.test()  # resolver may fail with test time deps
+          catch err
+              rethrow() # Currently all packages tested are under Ferrite-FEM control so don't expect breakage
+              err isa Pkg.Resolve.ResolverError || rethrow()
+              # If we can't resolve that means this is incompatible by SemVer and this is fine
+              # It means we marked this as a breaking change, so we don't need to worry about
+              # Mistakenly introducing a breaking change, as we have intentionally made one
+              @info "Not compatible with this release. No problem." exception=err
+              exit(0)  # Exit immediately, as a success
+          end

CITATION.cff

@@ -1,15 +1,21 @@
+---
 cff-version: 1.2.0
-title: "Ferrite.jl"
-message: "If you use Ferrite.jl, please cite it using the metadata from this file."
+title: Ferrite.jl
+message: If you use Ferrite.jl, please cite it using the metadata from this file.
 type: software
 authors:
-- family-names: "Carlsson"
-  given-names: "Kristoffer"
-  orcid: "https://orcid.org/0000-0001-9092-3092"
-- family-names: "Ekre"
-  given-names: "Fredrik"
-  orcid: "https://orcid.org/0000-0003-2476-5406"
-- name: "Ferrite.jl contributors"
-repository-code: 'https://github.com/Ferrite-FEM/Ferrite.jl'
-url: 'https://github.com/Ferrite-FEM/Ferrite.jl'
+  - family-names: Carlsson
+    given-names: Kristoffer
+    orcid: https://orcid.org/0000-0001-9092-3092
+  - family-names: Ekre
+    given-names: Fredrik
+    orcid: https://orcid.org/0000-0003-2476-5406
+  - name: Ferrite.jl contributors
+    website: https://github.com/Ferrite-FEM/Ferrite.jl/graphs/contributors
+identifiers:
+  - type: doi
+    value: 10.5281/zenodo.13862652
+    description: DOI representing all versions of Ferrite.jl (Zenodo Concept DOI)
+repository-code: https://github.com/Ferrite-FEM/Ferrite.jl
+url: https://github.com/Ferrite-FEM/Ferrite.jl
 license: MIT

CONTRIBUTING.md

@@ -48,7 +48,7 @@ almost instant feedback in the browser.
 
 ## Reporting issues
 
-If you have found a bug or a problem with Ferrite.jl you can open an [issue][new-issue]. Try
+If you have found a bug or a problem with Ferrite you can open an [issue][new-issue]. Try
 to include as much information about the problem as possible and preferably some code that
 can be copy-pasted to reproduce it (see [How to create a Minimal, Reproducible
 Example][so-mre]).

Project.toml

@@ -1,6 +1,6 @@
 name = "Ferrite"
 uuid = "c061ca5d-56c9-439f-9c0e-210fe06d3992"
-version = "0.3.14"
+version = "1.0.0"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
@@ -32,11 +32,13 @@ FerriteMetis = "Metis"
 [compat]
 BlockArrays = "0.16, 1"
 EnumX = "1"
+ForwardDiff = "0.10"
 Metis = "1.3"
 NearestNeighbors = "0.4"
 OrderedCollections = "1"
 Preferences = "1"
 Reexport = "1"
+StaticArrays = "1"
 Tensors = "1.14"
 WriteVTK = "1.13"
 julia = "1.9"
@@ -51,12 +53,14 @@ IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 Metis = "2679e427-3c69-5b7f-982b-ece356f1e94b"
 NBInclude = "0db19996-df87-5ea3-a455-e3a50d440464"
+OhMyThreads = "67456a42-1dca-4109-a031-0a68de7e3ad5"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 SHA = "ea8e919c-243c-51af-8825-aaa63cd721ce"
+TaskLocalValues = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 
 [targets]
-test = ["BlockArrays", "Downloads", "FerriteGmsh", "ForwardDiff", "Gmsh", "IterativeSolvers", "Metis", "Pkg", "NBInclude", "ProgressMeter", "Random", "SHA", "Test", "TimerOutputs", "Logging"]
+test = ["BlockArrays", "Downloads", "FerriteGmsh", "ForwardDiff", "Gmsh", "IterativeSolvers", "Metis", "Pkg", "NBInclude", "OhMyThreads", "ProgressMeter", "Random", "SHA", "TaskLocalValues", "Test", "TimerOutputs", "Logging"]

README.md

@@ -5,7 +5,8 @@
 </picture>
 
 ![Build Status](https://github.com/Ferrite-FEM/Ferrite.jl/workflows/CI/badge.svg?event=push)
-[![codecov.io](http://codecov.io/github/Ferrite-FEM/Ferrite.jl/coverage.svg?branch=master)](http://codecov.io/github/Ferrite-FEM/Ferrite.jl?branch=master)
+[![codecov.io](https://codecov.io/github/Ferrite-FEM/Ferrite.jl/coverage.svg?branch=master)](https://codecov.io/github/Ferrite-FEM/Ferrite.jl?branch=master)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13862652.svg)](https://doi.org/10.5281/zenodo.13862652)
 
 A finite element toolbox written in Julia.
 
@@ -26,10 +27,10 @@ welcome. See [CONTRIBUTING](CONTRIBUTING.md) for more details.
 
 ## Questions
 
-If you have questions about Ferrite.jl you're welcome to reach out to us on the [Julia
+If you have questions about Ferrite you're welcome to reach out to us on the [Julia
 Slack][julia-slack] under `#ferrite-fem` or on [Zulip][julia-zulip] under `#Ferrite.jl`.
 Alternatively you can start a [new discussion][gh-discussion] in the discussion forum on the
-repository. Feel free to ask us even if you are not sure the problem is with Ferrite.jl.
+repository. Feel free to ask us even if you are not sure the problem is with Ferrite.
 
 If you encounter what you think is a bug please report it, see
 [CONTRIBUTING.md](CONTRIBUTING.md#reporting-issues) for more information.
@@ -40,7 +41,7 @@ Please keep in mind that we are part of the Julia community and adhere to the
 [Julia Community Standards][standards].
 
 ## Related packages
-The following registered packages are part of the `Ferrite.jl` ecosystem in addition to Ferrite itself:
+The following registered packages are part of the Ferrite ecosystem in addition to Ferrite itself:
 * [Tensors.jl][Tensors]: Used throughout Ferrite for efficient tensor manipulation.
 * [FerriteViz.jl][FerriteViz]: [Makie.jl][Makie]-based visualization of Ferrite data.
 * [FerriteGmsh.jl][FerriteGmsh]: Create, interact with, and import [Gmsh][Gmsh] meshes into Ferrite.

benchmark/benchmarks-boundary-conditions.jl

@@ -32,12 +32,10 @@ for spatial_dim ∈ [2]
 
     # Non-symmetric application
     M, f = FerriteAssemblyHelper._assemble_mass(dh, cellvalues, false);
-    DIRICHLET_SUITE["global"]["apply!(M,f,APPLY_TRANSPOSE)"] = @benchmarkable apply!($M, $f, $ch; strategy=$(Ferrite.APPLY_TRANSPOSE));
-    DIRICHLET_SUITE["global"]["apply!(M,f,APPLY_INPLACE)"] = @benchmarkable apply!($M, $f, $ch; strategy=$(Ferrite.APPLY_INPLACE));
+    DIRICHLET_SUITE["global"]["apply!(M,f)"] = @benchmarkable apply!($M, $f, $ch);
     # Symmetric application
     M, f = FerriteAssemblyHelper._assemble_mass(dh, cellvalues, true);
-    DIRICHLET_SUITE["global"]["apply!(M_sym,f,APPLY_TRANSPOSE)"] = @benchmarkable apply!($M, $f, $ch; strategy=$(Ferrite.APPLY_TRANSPOSE));
-    DIRICHLET_SUITE["global"]["apply!(M_sym,f,APPLY_INPLACE)"] = @benchmarkable apply!($M, $f, $ch; strategy=$(Ferrite.APPLY_INPLACE));
+    DIRICHLET_SUITE["global"]["apply!(M_sym,f)"] = @benchmarkable apply!($M, $f, $ch);
 
     DIRICHLET_SUITE["global"]["apply!(f)"] = @benchmarkable apply!($f, $ch);
     DIRICHLET_SUITE["global"]["apply_zero!(f)"] = @benchmarkable apply!($f, $ch);