datatriage

The goal of datatriage is to automate tasks that are part of HIDRA data requests. For more information about HIDRA, see Fred Hutch CenterNet and the Biomedical Data Science Wiki page.

Installation

You can install the development version of datatriage like so:

remotes::install_github("FredHutch/datatriage")

Workflow

• Use datatriage::create_triage_project() to set up project.

├── reponame_data_shared # data to share with requestor
├── code # data set development code
├── data # any data sent by the requestor
├── docs # any supporting docs
├── README.md 
└── .gitignore

• Set up git and GitHub with:

usethis::use_git()
usethis::use_github(organisation = "FredHutch", private = TRUE)

• Create a branch.

• Begin query using database_query.qmd.

• Open a PR for the database query.

• Use data_report.qmd for create an overview and EDA of the data that will be shared.

• Write data sets to reponame_data_shared/reponame_data_shared_YYYY-MM-DD/.

• Summarize results using data_report_template.qmd.

• Open a PR for the data report.

• Manage file permissions.

• Send e-mail to the requestor and cc analytics@fredhutch.org.