Pin hdf5 version to 3.0.0

A recent change in the 3.x branch will change the includes for lzf.h which will break the compilation of the lzf shared library
Gregor-Mendel-Institute · Jun 15, 2021 · 4ce386e · 4ce386e
1 parent 9fa6c9d
commit 4ce386e
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -22,8 +22,8 @@ FROM jetty:9.4.26-jre8 as hdf5_builder
 USER root
 WORKDIR /root
 RUN apt update && apt install -y gcc libhdf5-dev git
-RUN git clone https://github.com/h5py/h5py.git
-RUN cd h5py/lzf && gcc -O2 -fPIC -I/usr/include/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -shared lzf/*.c lzf_filter.c -o liblzf_filter.so -lhdf5 
+RUN git clone --depth 1 --branch 3.0.0 https://github.com/h5py/h5py.git
+RUN cd h5py/lzf && gcc -O2 -fPIC -I/usr/include/hdf5/serial -L/usr/lib/x86_64-linux-gnu/hdf5/serial/ -shared lzf/*.c lzf_filter.c -o liblzf_filter.so -lhdf5
 
 FROM jetty:9.4.26-jre8
 USER root