1.0 beta 22

Upgrade to dcp-cli (aka hca) version 6.4.0 (#91)

1.0 beta 21

Adds support for project.supplememtary_links.

release/1.0b20

• Properly size DSSClient connection pool (#89, PR #90

  This avoids discarding connections unnecessarily as indicated by the accompanying Connection pool is full, discarding connection warning.

• Add support for file_core.content_description (#82, PR #87)

release/1.0b19

Add support for biomaterial_core.ncbi_taxon_id (#79).

release/1.0b18

• Add support for ImagingProtocol assay_type (#77)
• Fix test case test_bad_content

release/1.0b17

Rename cell_line.cell_line_type to .type (#75)

release/1.0b16

Fix: New paging in DSS GET /bundles causes KeyError (#73)

The addition of paging to the GET /bundles endpoint causes clients unaware of it to only retrieve the first 500 files in a bundle. For most bundles in HCA production, this is not an issue since they contain fewer files. Some plate-based bundles though cross that threshold. Prior to this change, the DSS helper function in this library silently ignored all but the first 500 files. When constructing an API Bundle class with the return value from the helper, it would raise a KeyError, or, in some cases, silently deserialize a truncated subset of the full metadata graph. IOW, this bug is pretty insidious. Clients are advised to upgrade to this version of the metadata-api as soon as possible.

release/1.0b15

This release absorbs a number of property renames in the metadata schema, a fix for a bug that caused metadata files to be retrieved from the Data Store's AWS replica even if the GCP replica was requested and support for cell line properties.

• e366e9e Rename process_type and protocol_type (#68)
• 6c2f166 Rename file_format to format (#64)
• 452edbe Rename contributors.contact_name (#63)
• 2d42b98 Contributors and publications schema changes (#59)
• 94ab4f0 Fix keyword arguments when calling _load_bundle()
• e1abeba Add support for mandatory cell line fields (#51)
• 9876853 Fetch files from the correct replica (#65)
• 1f822ec Add tests for analysis protocol fields (#61)
• 07d6bcb Added security.txt (#58)

release/1.0b14

• Add sequencing_protocol.paired_end

release/1.0b13

• Add support for imaging schema types
• Add canning of important test bundles
• Fix: project contributors are optional