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Update README.md
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maristeguie authored Jul 2, 2020
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Expand Up @@ -8,7 +8,7 @@ This R Shiny application was built to annotate footage (HD-stills) from _Nephrop
The app is stable under R (Version 3.6.3), RStudio (Version 1.1.463) and the following R libraries:
"colorspace", "DT", "exifr", "gtools", "hms", "jpeg", "magick", "plotrix", "raster", "shiny", "shinyBS", "shinyFiles", "shinyjs", "shinythemes", "shinyWidgets"

Few extra libraries for Annotations comparison / matching code (new feature 2020): "epiR", "ggplot2", "gridExtra", "reshape2")
Few extra libraries for Annotations comparison / matching code (new feature 2020): "epiR", "ggplot2", "gridExtra", "reshape2"

Two additional software were used to ensure correct extraction of exif information from the images:

Expand All @@ -32,7 +32,7 @@ Set up in the code by...

<img src="readme_screenshots/folder_structure.png">

#### Subfolder for the app
#### Subfolder for the app:
* No need to set up in the code.
* Example: C:/Parent_folder/subfolder_with_the_app
* Inside this subfolder we will have the app.R script with all the code.
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Inside the subsubfolder for the counts we will have a .csv file called "SURVEYS_and_COUNTERS.csv" with three columns: "survey", "counter" and "VideoOperatorID". This .csv file must be filled out by the SIC.

#### Subfolder for the Annotations comparison / matching code (new feature 2020):
* Details below
* Specific name: C:/Parent_folder/matching
* Inside this subfolder we will have the "matching_annotations.R" script



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