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3D recon#324

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curtcorum wants to merge 55 commits intoJuliaHealth:masterJuliaHealth/KomaMRI.jl:masterfrom curtcorum:3D_reconcurtcorum/KomaMRI.jl:3D_reconCopy head branch name to clipboard

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Commits on Mar 13, 2024

• 3D_recon work in progress.

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• Line 123 setup_raw() needs modifications for 3D?

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Commits on Mar 24, 2024

• Merge branch 'JuliaHealth:master' into 3D_recon

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Commits on Mar 27, 2024

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Commits on Mar 30, 2024

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Commits on Apr 5, 2024

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Commits on Apr 8, 2024

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Commits on May 15, 2024

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Commits on Jun 4, 2024

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Commits on Jun 5, 2024

• Merge branch 'JuliaHealth:master' into 3D_recon

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Commits on Jun 6, 2024

• Doctring updated for Sequence().

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• Fixed typo in Sequence() docstring.

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• Now exporting default_sim_params.

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Commits on Jun 7, 2024

• Changes to signal_to_raw_data, now separate counters for z and slices.

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• Fixed counter calculation for nz and ns for signal_to_raw_data.

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• Debugging counters for signal_to_raw_data. No need to reset the scan_counter?

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• Counters fixed. Needs some more testing. Ready to try 3D recon with MRIReco. Need to configure reco_parameters.

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Commits on Jun 8, 2024

• Fixing 2D vs 3D in progress, 2D currently broken in KomaUI()!!

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• Merge branch 'JuliaHealth:master' into 3D_recon

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• Still debugging...

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• Merge branch '3D_recon' of github.com:curtcorum/KomaMRI.jl into 3D_recon

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• Still forces 2D recons someplace...???!!!

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• Debugging reconstruction calls from KomaUI().

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• Debug raw data conversion for ge3d_cac.seq, something funny...!!!

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Commits on Jun 10, 2024

• A fair amount of work to estimate proper 3D recon parameters from seq, and work and debugging of the scan counters for 3D.

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Commits on Jun 12, 2024

• Update ISMRMRD.jl

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• Merge branch 'JuliaHealth:master' into 3D_recon

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• Update ISMRMRD.jl

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• Update ISMRMRD.jl

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• Update ISMRMRD.jl

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• Update ISMRMRD.jl

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• Update ISMRMRD.jl

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• Debugging signal_to_raw_data

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• Check on Ny, Ns, Nz == 0 for scan counters.

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Commits on Jun 13, 2024

• Defaulting to use_ndseq=true for signal_to_raw_data.

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Commits on Jun 17, 2024

• Merge branch 'JuliaHealth:master' into 3D_recon

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Commits on Jun 18, 2024

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Commits on Jun 19, 2024

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Commits on Jun 20, 2024

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Commits on Jun 24, 2024

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Commits on Jul 8, 2024

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Commits on Jul 9, 2024

• Working on central recon parameter estimation in KomaMRICore/src/rawdata/ISMRMRD.jl

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Commits on Jul 15, 2024

• Merge branch 'JuliaHealth:master' into 3D_recon

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Commits on Jul 16, 2024

• Working on estimate_seq_recon_dimension, working for 2d multislice, not for spiral

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• Merge branch 'master' into 3D_recon

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Commits on Jul 17, 2024

• Fixing merge.

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• Whitespace formatting.

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• Forced type of Nx, Ny, Nz, Ns read from seq.DEF to be Int64.

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• Merge branch 'JuliaHealth:master' into 3D_recon

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Commits on Jul 18, 2024

• LiearAlgebra added to Project. Check for radial sampling.

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Commits on Aug 5, 2024

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Commits on Sep 1, 2024

• Merge branch 'master_merge' into 3D_recon_merge

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Commits on Sep 27, 2024

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Commits on Oct 3, 2024

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