release on Zenodo

Version v0.1.1 for Zenodo

RNA-seq pipeline in Snakemake, making use of
trimmomatic (quality trimming, adapter removal),
Hisat2 (mapping),
Stringtie (de novo annotation),
DESeq2(normalization and differential expressions) and
blast (add hypothetical functions to the stringtie transcriptome).

For a more extended description and info on how to use, read the README.md

First release of a RNA-seq Snakemake pipeline

RNA-seq pipeline in Snakemake, making use of
trimmomatic (quality trimming, adapter removal),
Hisat2 (mapping),
Stringtie (de novo annotation),
DESeq2(normalization and differential expressions) and
blast (add hypothetical functions to the stringtie transcriptome).

For a more extended description and info on how to use, read the README.md