add conftest.py file and mark slow test functions

KoslickiLab · Dec 10, 2024 · 20d19b4 · 20d19b4
1 parent 22ad07f
commit 20d19b4
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/tests/test_y_integration_tests.py b/tests/test_y_integration_tests.py
@@ -2,6 +2,7 @@
 import tempfile
 import json
 from os.path import exists
+import pytest
 cpath = os.path.dirname(os.path.realpath(__file__))
 project_path = os.path.join(cpath,'..')
 
@@ -77,6 +78,7 @@ def test_run_pretrained_ref_db():
     res = subprocess.run(cmd, shell=True, check=True)
     assert res.returncode == 0
 
+@pytest.mark.slow
 def test_run_yacht_pretrained_ref_db():
     cmd = f"yacht run --json ./gtdb-rs214-reps.k31_0.9995_pretrained/gtdb-rs214-reps.k31_0.9995_config.json --sample_file '{project_path}/tests/testdata/sample.sig.zip' --significance 0.99 --num_threads 32 --min_coverage_list 1 0.6 0.2 0.1 --out ./result_pretrained.xlsx"
     res = subprocess.run(cmd, shell=True, check=True)