test errors due to directory changes

KoslickiLab · Nov 17, 2023 · 4d77d20 · 4d77d20
1 parent e7dd6b8
commit 4d77d20
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml
@@ -13,9 +13,9 @@ jobs:
         activate-environment: yacht_env
         environment-file: env/yacht_env.yml
     - name: make training data
-      run: python -m srcs.make_training_data_from_sketches --ref_file './tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ./ --force
+      run: python -m src.make_training_data_from_sketches --ref_file './tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ./ --force
     - name: run YACHT
-      run: python -m srcs.run_YACHT --json ./gtdb_ani_thresh_0.95_config.json --sample_file './tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1
+      run: python -m src.run_YACHT --json ./gtdb_ani_thresh_0.95_config.json --sample_file './tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1
     - name: test-unit
       run: pytest tests/test_unit.py --cov=./  --cov-report xml:covunit.xml
     - name: test-utils