test errors due to directory changes

KoslickiLab · Nov 17, 2023 · 888b260 · 888b260
1 parent c40ad54
commit 888b260
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/.github/workflows/runTest.yml b/.github/workflows/runTest.yml
@@ -13,7 +13,7 @@ jobs:
 #        activate-environment: yacht_env
 #        environment-file: env/yacht_env.yml
     - name: make training data
-      run: python srcs/srcs.make_training_data_from_sketches.py --ref_file '../tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ../ --force
+      run: python -m srcs/srcs.make_training_data_from_sketches.py --ref_file '../tests/testdata/20_genomes_sketches.zip' --ksize 31 --prefix 'gtdb_ani_thresh_0.95' --ani_thresh 0.95 --outdir ../ --force
     - name: run YACHT
       run: python srcs.run_YACHT.py --json ../gtdb_ani_thresh_0.95_config.json --sample_file '../tests/testdata/sample.sig.zip' --significance 0.99 --min_coverage_list 1 0.6 0.2 0.1
     - name: test-unit