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bulk documentation updates for v0.9 #240

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Sep 25, 2024
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bulk documentation updates for v0.9 #240

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a1bee6a
[skip ci] updated README and added new papers
bwpriest Sep 25, 2024
051704b
added deprecation warning to docs in MuyGPyS.examples.
bwpriest Sep 25, 2024
7280683
updated tensor shapes in optimization docs
bwpriest Sep 25, 2024
20336da
updated docstrings throughout MuyGPyS.gp submodule
bwpriest Sep 25, 2024
6207cec
updated copyright statements
bwpriest Sep 25, 2024
0af3a77
added some citations to loss function docstrings
bwpriest Sep 25, 2024
bdc6b77
added notes on variable names to the docs index
bwpriest Sep 25, 2024
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2 changes: 1 addition & 1 deletion LICENSE-MIT
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MIT License

Copyright 2021-2023 Lawrence Livermore National Security, LLC and other MuyGPyS
Copyright 2021-2024 Lawrence Livermore National Security, LLC and other MuyGPyS
Project Developers. See the top-level COPYRIGHT file for details.

Permission is hereby granted, free of charge, to any person obtaining a copy
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# SPDX-License-Identifier: MIT
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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2 changes: 1 addition & 1 deletion MuyGPyS/_test/shear.py
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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2 changes: 1 addition & 1 deletion MuyGPyS/_test/torch_utils.py
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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2 changes: 1 addition & 1 deletion MuyGPyS/_test/utils.py
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
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2 changes: 1 addition & 1 deletion MuyGPyS/examples/__init__.py
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT
5 changes: 4 additions & 1 deletion MuyGPyS/examples/classify.py
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# Copyright 2021-2023 Lawrence Livermore National Security, LLC and other
# Copyright 2021-2024 Lawrence Livermore National Security, LLC and other
# MuyGPyS Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: MIT

"""
Resources and high-level API for a simple classification workflow.

The `MuyGPyS.examples` subpackage is deprecated and will be streamlined or
removed in future versions.

:func:`~MuyGPyS.examples.classify.make_classifier` is a high-level API for
creating and training :class:`MuyGPyS.gp.muygps.MuyGPS` objects for
classification. :func:`~MuyGPyS.examples.classify.make_multivariate_classifier`
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