No tool was found to convert cool files to CSV files, so I wrote this little tool
pip install cooler
| chrom1 | start1 | end1 | chrom2 | start2 | end2 |
|---|---|---|---|---|---|
| chr1 | 1230000 | 1240000 | chr1 | 1230000 | 1240000 |
If you need to do something specific with the CSV results, you can write a small function (similar to utils/import_func_case.py) and then call the handler function with the -f argument：
python cool2csv.py -i <input_path> -o <output_path> -m <is_multi> -f ./utils/import_func_case.py