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Corrected typo and extended allowed types for MultiSegmentRecord #514

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merged 2 commits into from
Nov 8, 2024

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agent3gatech
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Corrected misordered arguments in util.lines_to_file. Added 'list' as allowed types for seg_name and seg_len, for when writing MultiSegmentRecords.

Corrected misordered arguments in util.lines_to_file. Added 'list' as allowed types for seg_name and seg_len, for when writing MultiSegmentRecords.
@bemoody
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bemoody commented Nov 6, 2024

Thanks!

In case it's not clear, here's an example which doesn't work prior to this change:

>>> import wfdb
>>> r = wfdb.rdheader('3000003', pn_dir='mimic3wdb/1.0/30/3000003')
>>> r.wrheader()

Probably nobody tested this code path, and the logic is hard to follow. This change should fix the immediate problem.

But I think what we really want is, rather than changing the types in SEGMENT_SPECS, we want to add "seg_name" and "seg_len" to LIST_FIELDS (wfdb/io/record.py, line 1675.)

@briangow
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briangow commented Nov 8, 2024

Thanks @agent3gatech !

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This will solve the problem! I'll open an issue to capture the alternate suggestion by @bemoody .

@briangow briangow merged commit 11adca8 into MIT-LCP:main Nov 8, 2024
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tompollard added a commit that referenced this pull request Jan 21, 2025
This pull request adds a changelog for `v4.2.0`. The changelog is based
on the following auto-generated summary of merge commits generated by
GitHub:

```
## What's Changed

* bug-fix: Numpy ValueError when cheking empty list equality by @ajadczaksunriselabs in #459
* bug-fix: Pandas set indexing error by @ajadczaksunriselabs in #460
* fix for /issues/452 by @tecamenz in #465
* Use numpydoc to render documentation by @SnoopJ in #472
* build(deps): bump readthedocs-sphinx-search from 0.1.1 to 0.3.2 in /docs by @dependabot in #477
* Update style by @bemoody in #482
* Fix NaN handling in Record.adc, and other fixes by @bemoody in #481
* Set upper bound on Numpy version (numpy = ">=1.10.1,<2.0.0"). Ref #493. by @tompollard in #494
* Update actions to use actions/checkout@v3 and actions/setup-python@v4. by @tompollard in #495
* Fix: Indent code to ensure 'j' is within for-loop in GQRS algorithm by @tompollard in #499
* Add write_dir argument to csv_to_wfdb. Fixes #67. by @tompollard in #492
* Fix warnings by @cbrnr in #502
* README improvements by @bemoody in #503
* Change in type promotion. Fixes to annotation.py by @tompollard in #506
* Use uv by @cbrnr in #504
* Change in type promotion. Fixes to _signal.py by @tompollard in #507
* Test round-trip write/read of supported binary formats by @bemoody in #509
* Corrected typo and extended allowed types for MultiSegmentRecord by @agent3gatech in #514
* Allow expanded physical signal in `calc_adc_params` by @briangow in #512
* Add capability to write signal with unique `samps_per_frame` to `wfdb.io.wrsamp` by @briangow in #510
* Fix selection of channels when converting to EDF by @SamJelfs in #519
* Change in type promotion introduced in Numpy 2.0. Fixes to edf.py. by @tompollard in #527
* Bump dependencies for NumPy 2 compatibility by @cbrnr in #511
* Bump version to v4.2.0 and update notes on creating new releases by @tompollard in #497

## New Contributors

* @ajadczaksunriselabs made their first contribution in #459
* @tecamenz made their first contribution in #465
* @SnoopJ made their first contribution in #472
* @dependabot made their first contribution in #477
* @agent3gatech made their first contribution in #514
* @SamJelfs made their first contribution in #519

**Full Changelog**: v4.1.2...v4.2.0
```
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3 participants